IGV with PROKKA

[anish pandey]

Hi there, i recently ran a neisserial genome annotation via prokka. This generated a .gff file as well as a .gbk for me.

When i come to load these files into IGV to visualise them, an error pops up 

"An error occurred while accessing: path/myfile.gff

Fasta file has uneven line lengths in config null"

do you have a fix for this, i would be much obliged

Thank you

Anish

PhD student in infection and immunity

University of southampton

[anish pandey]

i forgot to add I'm using OSX and IGV 2.3.36

[Jim Robinson]

How are you attempting to load the gff (what exact menu  are you using)?

Jim

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