Visualizing SNP/InDel using a xlsx file

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Venura Herath PhD

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Jun 9, 2018, 4:30:12 AM6/9/18

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Hi,

Our sequence analysis provider sent us a xlsx file instead of vcf formatted file with SNPs and InDels. Is there a workaround to use this in IGV in order to visualize these variations against reference genome?

I included the screenshot of column alignment.

Thank you,

Venura

Helga Thorvaldsdottir

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Jul 6, 2018, 1:58:24 PM7/6/18

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Hi Venura,

Sorry - IGV cannot read Excel files.

Helga

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