About sashimi plot

[jsw...@gmail.com]

Hello, I use IGV for my RNA sequencing data to find alternative splicing. And Sashimi plot is the most powerful tool to do this I think.

Anyway, I have a question about this tool. In the guide you provided(https://software.broadinstitute.org/software/igv/sites/cancerinformatics.org.igv/files/SL_Sashimi1.png) Sashimi plot show us around 10,000 ~ 11,000 bp.

But when I use, it only shows me 1,000 ~ 1,400 bp. Trying to see wider coverage, it tells me "Zoom in to see junctions". So I couldn't use well this powerful tool.

What should I do? Is it because of sort of data? If there is a solution please let me know. 

Thank you very much!

Jung

[James Robinson]

The window is fixed when you open the plot from the main view.  So zoom out to the window you want to see before opening the plot.  

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