Problem in manual loading BAM files with long path name

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biao...@gmail.com

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Sep 24, 2021, 11:35:28 AM9/24/21
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Dear IGV help,

I am running IGV version 2.7.2 10/21/2019. 

When the same BAM file is accessed through our web link, it works.  Sometimes, we need to manually load the BAM files.  During the manual loading, when I reach the folder with the BAM file, the full file name was replaced with a shortened name.  As a result, the BAM file could not be recognized by IGV and it could not be loaded.  The path to the BAM is long.  When I copy the BAM file to a location with a shorter path, the BAM file can be loaded.  Could you please help me in resolving the issue?  Your help is much appreciated.

Warmly
Biao

robin...@gmail.com

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Sep 27, 2021, 11:46:47 PM9/27/21
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Hi Biao,

Sorry for the delay, I've been traveling.   I really don't understand your description of the problem,  however the version you are using is 2 years old.   Please try with the latest version, and if the problem persists we will need to see your "igv.log" file, which you can email privately if you like. 

Jim
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