chrM not loading refseq genes/bed files/bam reads (hg19 ONLY)
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Jenny Kerschner
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Dec 10, 2025, 12:21:39 PM (2 days ago) Dec 10
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chrM in hg19 is not loading any refseq genes, and therefore not allowing any bed files to load over this region or aligning any reads from bam files. I am running IVG 2.19.7 on a PC. I tried uninstalling and reinstalling (with java) and the issue persists. chrM loads just fine for hg38 and mm10, so this is something specific to hg19.