Can not display PSL file in IGV.js

[wanghai...@gmail.com]

I cannot display PSL alignment file in IGV.js. Here is the configuration file:

<script type="text/javascript">

    $(document).ready(function () {

        var div = $("#igvDiv")[0],
                options = {
                    showNavigation: true,
                    showRuler: true,
                    reference: {
                      fastaURL: "KC580640.fasta"
                    },
                    tracks: [
                        {
                          name: "Bam",
                          type: "alignment",
                          format: "bam",
                          sourceType: "file",
                          url: "B226-PD-15-1068-sorted.bam",
                          viewAsPairs: true,
                          colorBy: "strand"
                        },
                         {
                          name: "Consensus",
                          format: "psl",
                          sourceType: "file",
                          url: "B226-PD-15-1068-contigs.psl"
                        }
                    ]
                };

        igv.createBrowser(div, options);

    });

</script>

Here is the B226-PD-15-1068-contigs.psl file:

psLayout version 3

match   mis-    rep.    N's     Q gap   Q gap   T gap   T gap   strand  Q               Q       Q       Q       T               T       T       T       block   blockSizes      qStarts  tStarts
        match   match           count   bases   count   bases           name            size    start   end     name            size    start   end     count
---------------------------------------------------------------------------------------------------------------------------------------------------------------
2240    0       0       0       0       0       0       0       +       gi|451928385|gb|Test|   2240    0       2240    gi|451928385|gb|KC580640.1|     5278    1400    3640    1       2240,   0,      1400,
1120    0       0       0       0       0       0       0       +       gi|451928385|gb|Test2|  1120    0       1120    gi|451928385|gb|KC580640.1|     5278    4060    5180    1       1120,   0,      4060,

Below is the output:

[James Robinson]

psl files are not yet supported in igv.js.    Please use git to file igv.js issues and requests (github.com/igvteam/igv.js/issues

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