[infectious-disease-ontology] r363 committed - release directory

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Revision: 363
Author: albertg...@gmail.com
Date: Fri Aug 1 17:28:40 2014 UTC
Log: release directory
http://code.google.com/p/infectious-disease-ontology/source/detail?r=363

Added:
/releases/2014-08-01
/releases/2014-08-01/external-templates.txt
/releases/2014-08-01/ido-base.owl
/releases/2014-08-01/ido-external-by-hand.owl
/releases/2014-08-01/ido-external-derived.owl
/releases/2014-08-01/ido-external.owl
/releases/2014-08-01/ido-main.owl
/releases/2014-08-01/ido-obsolete.owl
/releases/2014-08-01/ido.obo
/releases/2014-08-01/ido.owl

=======================================
--- /dev/null
+++ /releases/2014-08-01/external-templates.txt Fri Aug 1 17:28:40 2014 UTC
@@ -0,0 +1,120 @@
+default endpoint:http://beta.neurocommons.org/sparql/
+default graph_base:http://purl.org/science/graph/obo2/
+# define the prefixes that will be added to all queries
+
+prefix:rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+prefix:owl: <http://www.w3.org/2002/07/owl#>
+prefix:obi: <http://purl.obolibrary.org/obo/>
+prefix:tax: <http://purl.obolibrary.org/obo/NCBITaxon>
+
+prefix:iao: <http://purl.obolibrary.org/obo/>
+
+# give names to our annotation properties
+
+alias:preferredTerm=iao:IAO_0000111
+alias:definition=iao:IAO_0000115
+alias:importedFrom=iao:IAO_0000412
+
+# give names to the top obi taxa
+alias:bacteria=tax:_2
+alias:eukaryota=tax:_2759
+alias:archaea=tax:_2157
+alias:viruses=tax:_10239
+alias:cellularOrganism=tax:_131567
+
+# get the labels for the 4 classes we import into obi. No definitions in
NCBI taxonomy.
+# Maybe pick up synonyms later.
+== once only ==
+construct
+ { ?super rdf:type owl:Class.
+ ?super rdfs:label ?label.
+ }
+where
+ { ?super rdfs:label ?label.
+ {?super rdfs:subClassOf tax:_1} UNION {?super rdfs:subClassOf
alias:cellularOrganism}
+ FILTER ((?super=alias:bacteria) || (?super=alias:eukaryota) ||
(?super=alias:viruses) || (?super=alias:archaea))
+ }
+
+# Get the taxon term and superclasses up to the 4 we include in OBI, and
labels for them
+== http://purl.obolibrary.org/obo/NCBITaxon.* ==
+construct
+ { ?super rdf:type owl:Class.
+ ?super rdfs:subClassOf ?parent.
+ ?super alias:preferredTerm ?label.
+ ?super rdfs:label ?label.
+ ?super alias:importedFrom <http://purl.obolibrary.org/obo/ncbitaxon.owl>
+ }
+where
+{
+
+# part 1
+ { # We harvest the transitive superclass annotations
+ _ID_GOES_HERE_ rdfs:subClassOf ?super.
+ graph <http://purl.org/science/graph/obo2/NCBITaxon>
+ { ?super rdfs:subClassOf ?parent.
+ ?super rdfs:label ?label.
+ }
+ }
+UNION
+
+ { graph <http://purl.org/science/graph/obo2/NCBITaxon>
+ { ?super rdfs:subClassOf ?parent.
+ ?super rdfs:label ?label.
+ FILTER (?super=_ID_GOES_HERE_)
+ }
+ }
+
+FILTER (!((?super=tax:_2) || (?super=tax:_2759) || (?super=tax:_10239) ||
(?super=tax:_2157) || (?super = tax:_131567) ||
+ (?parent = tax:_131567)))
+}
+# get the label and definition for your basic OBO term.
+== http://purl.obolibrary.org/obo/.* ==
+construct
+{
+ _ID_GOES_HERE_ alias:preferredTerm ?label.
+ _ID_GOES_HERE_ rdfs:label ?label.
+ _ID_GOES_HERE_ alias:definition ?definition.
+}
+from _GRAPH_GOES_HERE_
+where
+{
+ { _ID_GOES_HERE_ rdfs:label ?label. }
+ UNION
+ { _ID_GOES_HERE_ alias:definition ?definition.
+ }
+}
+
+# get the label and definition for BIRN terms
+== http://ontology.neuinfo.org/NIF/BiomaterialEntities/.* ==
+construct
+{
+ _ID_GOES_HERE_ rdf:type owl:Class.
+ _ID_GOES_HERE_ alias:preferredTerm ?label.
+ _ID_GOES_HERE_ rdfs:label ?label.
+ _ID_GOES_HERE_ alias:definition ?definition.
+}
+where
+{
+ { _ID_GOES_HERE_ rdfs:label ?label. }
+ UNION
+ { _ID_GOES_HERE_
<http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#birnlexDefinition> ?definition}
+}
+
+# get the label and definition for VO (ie obolibrary type) terms
+== http://purl.obolibrary.org/obo/.* ==
+construct
+{
+ _ID_GOES_HERE_ rdf:type owl:Class.
+ _ID_GOES_HERE_ alias:preferredTerm ?label.
+ _ID_GOES_HERE_ rdfs:label ?label.
+ _ID_GOES_HERE_ alias:definition ?definition.
+}
+from _GRAPH_GOES_HERE_
+where
+{
+ { _ID_GOES_HERE_ rdfs:label ?label. }
+ UNION
+ { _ID_GOES_HERE_ alias:definition ?definition}
+}
+
+
=======================================
--- /dev/null
+++ /releases/2014-08-01/ido-base.owl Fri Aug 1 17:28:40 2014 UTC
@@ -0,0 +1,3550 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/ido.owl#"
+ xml:base="http://purl.obolibrary.org/obo/ido.owl"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:CARO="http://purl.obolibrary.org/obo/"
+ xmlns:NCBITaxon="http://purl.obolibrary.org/obo/"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:GO="http://purl.obolibrary.org/obo/"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:CHEBI="http://purl.obolibrary.org/obo/"
+ xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+ xmlns:TRANS="http://purl.obolibrary.org/obo/">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/ido-base.owl">
+ <dc:date
rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2010-05-19</dc:date>
+ <protege:defaultLanguage>en</protege:defaultLanguage>
+ <dc:creator>Alan Ruttenberg</dc:creator>
+ <dc:creator>Bjoern Peters</dc:creator>
+ <dc:creator>Albert Goldfain</dc:creator>
+ <dc:creator>Barry Smith</dc:creator>
+ <dc:creator>Lindsay Cowell</dc:creator>
+ <dc:license>Creative Commons 3.0 BY</dc:license>
+ <rdfs:comment xml:lang="en">Attribution (CC 3 BY License): You must give
appropriate credit, provide a link to the license, and indicate if changes
were made. You may do so in any reasonable manner, but not in any way that
suggests the licensor endorses you or your use.</rdfs:comment>
+ <rdfs:comment xml:lang="en">The core Infectious Disease Ontology
is an ontology of entities generally relevant to both the biomedical and
clinical aspects of infectious diseases, including terms such as
'pathogen', 'host', 'vector', and
'vaccine'. The structure of IDO adheres to the Basic Formal
Ontology. Terms in IDO that are within the scope of other OBO Foundry
ontologies, such as the Gene Ontology, are derived from those ontologies.
Other terms are defined as cross-products of terms from Foundry ontologies
to the extent possible. For more information, see
http://www.infectiousdiseaseontology.org/Home.html. </rdfs:comment>
+ <rdfs:comment xml:lang="en">This ontology is in early development.
Expect it to change.</rdfs:comment>
+
<rdfs:seeAlso>http://www.infectiousdiseaseontology.org/Home.html</rdfs:seeAlso>
+ <dc:creator>Alexander Diehl</dc:creator>
+ <owl:imports
rdf:resource="http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl"/>
+ <owl:imports
rdf:resource="https://information-artifact-ontology.googlecode.com/svn/releases/2012-07-11-BFO2/ontology-metadata.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/ido-external-derived.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/ido-external.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/bfo/2014-05-03/classes-only.owl"/>
+ </owl:Ontology>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/creator"/>
+ <owl:AnnotationProperty
rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/OBI_0000283"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/date"/>
+
+
+
+ 
+
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IDO_0000664">
+ <rdfs:label>has_material_basis_in</rdfs:label>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#has_part">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
+ <rdfs:label>has_part</rdfs:label>
+ <owl:inverseOf
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <rdfs:subPropertyOf
rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.w3.org/2002/07/owl#topObjectProperty"/>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000400">
+ <rdfs:label xml:lang="en">symbiont role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>The role is realized in symbiosis.</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">A role borne by an organism in
symbiosis.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000401">
+ <rdfs:label xml:lang="en">mutualist role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000400"/>
+ <obo:IAO_0000115 xml:lang="en">A symbiont role borne by an
organism in virtue of the fact that both symbionts derive a growth,
survival, or fitness advantage from symbiosis.</obo:IAO_0000115>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>The role is realized in processes that result in the
growth, survival, or fitness advantage of either organism.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000402">
+ <rdfs:label xml:lang="en">commensal role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000400"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>The role is realized in processes that result in the
commensal's growth, survival, or fitness advantage.</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">A symbiont role borne by an
organism in virtue of the fact that it derives a growth, survival, or
fitness advantage from symbiosis, but the other symbiont is neither
advantaged nor disadvantaged.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000403">
+ <rdfs:label xml:lang="en">parasite role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000400"/>
+ <rdfs:comment>In the medical community, the term
'parasite' is used with the narrower meaning of eukaryotic
pathogen.</rdfs:comment>
+ <rdfs:comment>The role is realized in processes that result in the
parasite's growth, survival, or fitness advantage or in the other
organism's growth, survival, or fitness reduction.</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">A symbiont role borne by an
organism in virtue of the fact that it derives a growth, survival, or
fitness advantage from symbiosis while the other symbiont's growth,
survival, or fitness is reduced.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000404">
+ <rdfs:label xml:lang="en">infectious agent role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000405"/>
+ <obo:IAO_0000115 xml:lang="en">A role borne by an infectious agent
when contained in a host in which its infectious disposition can be
realized.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000405">
+ <rdfs:label xml:lang="en">pathogen role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>Clostridium botulinum is an example of an entity
with the capability to bear the pathogen role but that does not have the
capability to bear the infectious agent role or the parasite role. The
influenza viruses are examples of organisms that can bear both the
infectious agent and pathogen roles.</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">A role borne by pathogen in virtue
of the fact that it or one of its products is sufficiently close to an
organism towards which it has the pathogenic disposition to allow
realization of the pathogenic disposition.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000406">
+ <rdfs:label xml:lang="en">opportunistic infectious
disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000452"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infectious disposition to become
part of a disorder only in organisms whose defenses are
compromised.</obo:IAO_0000115>
+ <rdfs:comment>The disposition is realized in a process by which
the bearer becomes part of a disorder in an immunocompromised
host.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment xml:lang="en">This includes individuals who are
immunocompromised or who have damaged barriers that normally protect
against infection (e.g. skin).</rdfs:comment>
+ <obo:IAO_0000118 xml:lang="en">opportunitistic pathogenic
disposition</obo:IAO_0000118>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000407">
+ <rdfs:label xml:lang="en">primary infectious
disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000452"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>A quote from page 3 of Mandell's
"Principles and Practice of Infectious Diseases" (Sixth edition):
"It is useful to distinguish "principal" pathogens, which
regularly cause disease in some proportion of susceptible individuals with
apparently intact defense systems, from other potentially pathogenic
microorganisms. ... even for most organisms classified as principal
pathogens, for example, Staphylococcus aureus and the pneumococcus, some
impairment or local breakdown in normal host defense mechanisms must occur
for these bacteria to cause disease. ... Thus, it seems clear that the
capacity of certain microorganisms to cause disease in seemingly
uncompromised human hosts on a regular basis reflects some fundamental
difference in their virulence capabilities from those of opportunists and
the more numerous commensal species that rarely, if ever, cause
disease."</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:comment>A pathogen with a primary infectious disposition can
cause disease or death in both immunocompromised and immunocompetent
hosts.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infectious disposition to become
part of a disorder in organisms that have intact defenses.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000408">
+ <rdfs:label xml:lang="en">symbiont host role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000629"/>
+ <rdfs:comment>The role is realized in processes in which the host
makes the relevant environmental resources available to its partner in
symbiosis. A bearer of a symbiont host role is bearer also of a symbiont
role.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A host role borne by an organism in
virtue of the fact that its extended organism contains a second organism
and provides an environment supportive for the survival, growth,
maturation, or reproduction of that organism. </obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>The relevant environmental resources may include
nutrient resources, warmth, or moisture.</rdfs:comment>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000409">
+ <rdfs:label xml:lang="en">definitive host role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000408"/>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A symbiont host role borne by an
organism in virtue of the fact that its partner in symbiosis reaches
developmental maturity or reproduces sexually in the host.
</obo:IAO_0000115>
+ <rdfs:comment>The role is realized in developmental and
reproduction processes of the host's partner in
symbiosis.</rdfs:comment>
+ <obo:IAO_0000118 xml:lang="en">primary host role</obo:IAO_0000118>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000410">
+ <rdfs:label xml:lang="en">intermediate host role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000408"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:comment>The role is realized in developmental processes of
the host's partner in symbiosis.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A symbiont host role borne by an
organism in virtue of the fact that its partner in symbiosis utilizes the
host to undergo a developmental stage transition, and the host is required
for continuation of the partner's life cycle.</obo:IAO_0000115>
+ <obo:IAO_0000118 xml:lang="en">secondary host
role</obo:IAO_0000118>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000411">
+ <rdfs:label xml:lang="en">paratenic host role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000408"/>
+ <rdfs:comment>The role is realized in developmental processes of
the host's partner in symbiosis.</rdfs:comment>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A symbiont host role borne by an
organism in virtue of the fact that its partner in symbiosis utilizes the
host to undergo a developmental stage transition, but the host is not
required for continuation of the partner's life cycle.
</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000412">
+ <rdfs:label xml:lang="en">dead-end host role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000408"/>
+ <obo:IAO_0000115 xml:lang="en">A symbiont host role borne by an
organism in virtue of the fact that its partner in symbiosis has the
infectious disposition but cannot be transmitted from the host to the
partner's definitive host.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000118 xml:lang="en">incidental host
role</obo:IAO_0000118>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000413">
+ <rdfs:label xml:lang="en">parasite host role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000408"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A symbiont host role borne by an
organism in virtue of the fact that its partner in symbiosis derives from
the host a growth, survival, or fitness advantage while the host's
growth, survival, or fitness is reduced.</obo:IAO_0000115>
+ <rdfs:comment>The role is realized in processes that result in the
parasite's growth, survival, or fitness advantage or in the host's
growth, survival, or fitness reduction.</rdfs:comment>
+ <rdfs:comment>The partner in symbiosis bears the parasite
role.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000414">
+ <rdfs:label xml:lang="en">infectious agent host role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000415"/>
+ <obo:IAO_0000115 xml:lang="en">A pathogen host role borne by an
organism in virtue of the fact that its extended organism contains an
infectious agent.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:comment>By this definition, vectors and other organisms that
may not be infected are bearers of the infectious agent host
role.</rdfs:comment>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000415">
+ <rdfs:label xml:lang="en">pathogen host role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000629"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>Bearing the infectious agent host role implies
bearing the pathogen host role, but the reverse is not true. See comment
for infectious agent host role.</rdfs:comment>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A host role borne by an organism in
virtue of the fact that its extended organism contains a
pathogen.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000416">
+ <rdfs:label xml:lang="en">infectious agent carrier
role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000414"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infectious agent host role borne
by an organism in virtue of the fact that its extended organism contains an
infectious agent, the infectious agent has the infectious disposition
towards the host, and the host has no symptoms of the infectious disease
caused by the infectious agent.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000417">
+ <rdfs:label xml:lang="en">infectious agent transporter
role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
+ <obo:IAO_0000115 xml:lang="en">A role borne by a material entity
in virtue of the fact that an infectious agent is located in or on the
entity and the entity has the capability to transfer (either actively or
passively) the infectious agent from one location to another.
</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:comment>The role is realized in a process that transfers an
infectious organism from one location to another.</rdfs:comment>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000418">
+ <rdfs:label xml:lang="en">infectious agent vector role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000417"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infectious agent transporter
role that is borne by an organism active in the transfer of an infectious
agent to an organism of another Species and in which the agent is
infectious.</obo:IAO_0000115>
+ <rdfs:comment>The role is realized in a transmission process. A
bearer of a vector role is also a bearer of a host role.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000419">
+ <rdfs:label xml:lang="en">mechanical vector of infectious agent
role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000418"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infectious agent vector role
borne by an organism in virtue of the fact that the infectious agent does
not multiply in or on the vector.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000420">
+ <rdfs:label xml:lang="en">biological vector of infectious agent
role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000418"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infectious agent vector role
borne by an organism in virtue of the fact that the infectious agent
multiplies in the vector.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000421">
+ <rdfs:label xml:lang="en">infectious agent vehicle
role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000417"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>Drinking water bears the infectious agent vehicle
role, but does not bear either of the subtype roles.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infectious agent transporter
role borne by an entity in virtue of the fact that the entity is not a
complete organism.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000422">
+ <rdfs:label xml:lang="en">biological vehicle of infectious agent
role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000421"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>Examples include blood, serum, tissue, or fresh
produce.</rdfs:comment>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infectious agent vehicle role
borne by an entity in virtue of the fact that the entity is living or
contains living cells other than those that have the infectious
disposition.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000423">
+ <rdfs:label xml:lang="en">fomite role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000421"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infectious agent vehicle role
borne by an entity in virtue of the fact that the entity is not
alive.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000424">
+ <rdfs:label xml:lang="en">reservoir of infectious agent
role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
+ <obo:IAO_0000115 xml:lang="en">A role borne by a material entity
in virtue of the fact that it is a habitat in which infectious agents can
persist and multiply and from which they can be transmitted in virtue of
prevailing practices of potential hosts.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>The role is realized in a process that has as part
life and multiplication processes of an infectious agent and a transmission
process. </rdfs:comment>
+ <rdfs:comment>If the material entity bearing the reservoir role is
an organism, then this organism also bears the host role. The organism may
also bear the vector role.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000425">
+ <rdfs:label xml:lang="en">virulence factor disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:comment>The virulence factor disposition is typically
realized in processes that improve survival of the pathogen in a host,
increase the likelihood of transmission to a host, or cause pathological
processes in a host.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A disposition borne by a biological
macromolecule produced by a pathogen that is a disposition to undergo
processes that increase the pathogen's virulence.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000426">
+ <rdfs:label xml:lang="en">toxin disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A disposition to cause I)
malfunction of cells, ii) damage to extracellular matrix, or iii) damage of
cells to a degree that can result in cell death.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000427">
+ <rdfs:label xml:lang="en">exotoxin disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000426"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>The disposition is realized in a direct enzymatic
process that damages host cells or extracellular matrix.</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">A toxin disposition to damage cells
or extracellular matrix by a direct enzymatic process.</obo:IAO_0000115>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000428">
+ <rdfs:label xml:lang="en">enterotoxin disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000427"/>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An exotoxin disposition to damage
cells of the host intestinal mucosa.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000429">
+ <rdfs:label xml:lang="en">endotoxin disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000426"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A toxin disposition that inheres in
a protein or protein complex that is released from a pathogen only upon
cytolysis.</obo:IAO_0000115>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000430">
+ <rdfs:label xml:lang="en">infectious agent portal of entry
role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
+ <obo:IAO_0000115 xml:lang="en">A role borne by an anatomical
entity in virtue of the fact that it serves as the site through which an
infectious agent enters a host.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>The role is realized in a process by which an
infectious agent enters a host.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000431">
+ <rdfs:label xml:lang="en">infectious agent portal of exit
role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
+ <rdfs:comment>The role is realized in a process by which an
infectious agent exists a host.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A role borne by an anatomical
entity in virtue of the fact that it serves as the site through which an
infectious agent exits a host.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000432">
+ <rdfs:label xml:lang="en">disinfectant role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>The role is realized in the killing and/or growth
inhibition of microorganisms on the non-living entity.</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">A role borne by a material entity
in virtue of the fact that it has an antimicrobial disposition and is
applied to a non-living entity. </obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000433">
+ <rdfs:label xml:lang="en">antiseptic role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
+ <rdfs:comment>The role is realized in the killing and/or growth
inhibition of microorganisms on the anatomical entity. </rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">A role borne by a material entity
in virtue of the fact that it has an antimicrobial disposition and is
applied to an anatomical entity of a living organism. </obo:IAO_0000115>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000434">
+ <rdfs:label xml:lang="en">primary infection role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>The role is realized in a process by which the
infectious disorder is established in the host.</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">A role borne by an infectious
disorder in virtue of the fact that (1) the host has at least two distinct
infectious disorders, where neither arose from the other through
metastasis, (2) at the time the infectious disorder was established in the
host, the host had no infectious disorder, and (3) the infectious disorder
increases the host's susceptibility to infectious
disorders.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000435">
+ <rdfs:label xml:lang="en">secondary infection role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
+ <rdfs:comment>The role is realized in a process by which the
infectious disorder is established in the host.</rdfs:comment>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A role borne by an infectious
disorder in virtue of the fact that (1) the host has at least two distinct
infectious disorders, where neither arose from the other through
metastasis, (2) at the time the infectious disorder was established in the
host, the host had a primary infectious disorder, and (3) establishment of
the infectious disorder occurs because of increased susceptibility to
infectious disorders conferred by the primary infectious
disorder.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000436">
+ <rdfs:label xml:lang="en">infectious disease</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000031"/>
+ <rdfs:comment>The disposition is realized in an infectious disease
course.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A disease whose physical basis is
an infectious disorder.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000118 xml:lang="en">tranmissible
disease</obo:IAO_0000118>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000437">
+ <rdfs:label xml:lang="en">adhesion disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <rdfs:comment>The disposition is realized in an adherence to host
process.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A disposition borne by a biological
macromolecule that is the disposition to participate in adherence to a
host.</obo:IAO_0000115>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000438">
+ <rdfs:label xml:lang="en">invasion disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A disposition borne by a biological
macromolecule that is the disposition to facilitate breach of host
epithelial barriers or entry into and survival in host
cells.</obo:IAO_0000115>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:comment>A molecule with the invasion disposition is referred
to as an invasion factor or invasin.</rdfs:comment>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000439">
+ <rdfs:label xml:lang="en">antimicrobial disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000115 xml:lang="en">A disposition to kill or inhibit
the development or reproduction of microorganisms.</obo:IAO_0000115>
+ <rdfs:comment>The disposition is realized in the killing or
inhibition of microorganisms.</rdfs:comment>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>Some instances might be functions, depending on
whether the bearer is something that exists and is used for the purpose
(alcohol) or something that was designed for the purpose (pine sol).
Entities that kill microorganisms are referred to as microbicidal; entities
that inhibit the growth of microorganisms are referred to as
microbistatic.</rdfs:comment>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000440">
+ <rdfs:label xml:lang="en">antiviral disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A disposition to kill or inhibit
the lifecycle of viruses.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000441">
+ <rdfs:label xml:lang="en">antifungal disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A disposition to kill or inhibit
the development or reproduction of fungal organisms.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000442">
+ <rdfs:label xml:lang="en">antibacterial disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000118>antibiotic disposition</obo:IAO_0000118>
+ <obo:IAO_0000115 xml:lang="en">A disposition to kill or inhibit
the reproduction of bacteria.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000443">
+ <rdfs:label xml:lang="en">antiparasitic disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>In the term name, we are using parasite in the
medical sense of eukaryotic organisms that are parasitic in
humans.</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">A disposition to kill or inhibit
the development or reproduction of eukaryotic parasites.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000444">
+ <rdfs:label xml:lang="en">protective resistance</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A disposition that inheres in a
material entity in virtue of the fact that the entity has a part (e.g. a
gene product), which itself has a disposition to mitigate damage to the
entity.</obo:IAO_0000115>
+ <rdfs:comment>The disposition is realized in a process that
mitigates damage to the bearer and has the part as a
participant.</rdfs:comment>
+ <rdfs:comment>Examples include the following: CCR5 mutations
protect T cells from HIV invasion. A tumor cell's resistance to
chemotherapy protects the cell from damage by the drug (although this harms
the patient). An insect's resistance to insecticide protects it from
the insecticide.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000445">
+ <rdfs:label xml:lang="en">resistance to drug</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000444"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A protective resistance that
mitigates the damaging effects of a drug.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000118 xml:lang="en">drug resistance</obo:IAO_0000118>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000446">
+ <rdfs:label xml:lang="en">resistance to infectious
agent</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000444"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A protective resistance that
inheres in an organism and mitigates the damaging effects on that organism
of an infectious agent.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000447">
+ <rdfs:label xml:lang="en">herd immunity to infectious
organism</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000588"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A collective resistance disposition
that inheres in an organism population in virtue of the fact that the
proportion of the population with immunity to an infectious agent is high
resulting in a low number of transmissions from hosts in the population to
susceptible individuals in the population and thereby mitigating the
damaging effects of the infectious agent on the
population.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000448">
+ <rdfs:label xml:lang="en">immunity to infectious agent</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000446"/>
+ <obo:IAO_0000115 xml:lang="en">A resistance to infectious agent
that inheres in an organism in virtue of immune system components in the
extended organism.</obo:IAO_0000115>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:comment>We don't specify that immunity results from
prior exposure, because we want to include innate immunity. In addition,
for adaptive immunity, there could be some low level immunity even in a
primary immune response.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000118 xml:lang="en">protective immunity to infectious
agent</obo:IAO_0000118>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000449">
+ <rdfs:label xml:lang="en">sterilizing immunity to infectious
agent</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000448"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An immunity to infectious agent
that results in elimination of the infectious agent from the
host.</obo:IAO_0000115>
+ <rdfs:comment>Sterilizing immunity is typically conferred by
neutralizing antibodies.</rdfs:comment>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000450">
+ <rdfs:label xml:lang="en">pathogenic disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>The use of 'initiates' is intended to convey
that a pathogenic disposition is realized when processes resulting in a
disorder begin because of some action on the part of the bearer of the
disposition. By this interpretation of 'initiates',
disorder-causing entities such as glass, UV light, and toxins do not have a
pathogenic disposition.</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">A disposition to initiate processes
that result in a disorder.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:comment>A pathogenic disposition is realized in processes
that create a disorder.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000118 xml:lang="en">pathogenicity</obo:IAO_0000118>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000451">
+ <rdfs:label xml:lang="en">invasive disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A disposition borne by an
infectious agent that is the disposition to penetrate the epithelial
barriers of an organism of another Species.</obo:IAO_0000115>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000452">
+ <rdfs:label xml:lang="en">infectious disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000450"/>
+ <rdfs:comment>The disposition is realized in a process that has as
part a transmission process, an establishment in host process, a process
that results in a disorder, and a process in which the bearer of the
disposition becomes part of that disorder. The infectious disposition has
a complementary disposition that inheres in an organism and is the
capability to be host to an organism with an infectious disposition and to
undergo processes intiated by that infectious organism that result in a
disorder.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A pathogenic disposition that
inheres in an organism and is a disposition for that organism (1) to be
transmitted to a host, (2) to establish itself in the host, (3) to initiate
processes that result in a disorder in the host, and (4) to become part of
that disorder.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000453">
+ <rdfs:label xml:lang="en">zoonotic disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000452"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>An infectious disease associated with an infectious
agent that bears the zoonotic disposition is referred to as a
zoonosis.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infectious disposition that is
the disposition to be transmitted from an infected, non-human host to a
human host.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000454">
+ <rdfs:label xml:lang="en">reverse zoonotic disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000452"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:comment>An infectious disease associated with an infectious
agent that bears the reverse zoonotic disposition is referred to as a
reverse zoonosis.</rdfs:comment>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infectious disposition that is
the disposition to be transmitted from an infected, human host to a
non-human host.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000455">
+ <rdfs:label xml:lang="en">collective disposition</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A disposition that inheres in a
collection of entities in virtue of the individual dispositions of the
constituents of that collection. </obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>"... in virtue of the individual dispositions
of the contstituents" is intended to capture the fact that the
collective disposition results from the combination of the individual
dispositions. It is not necessary that every constituent of the aggregate
have a relevant individual disposition.</rdfs:comment>
+ <rdfs:comment>The disposition is realized in a process that has as
part realizations of some of the individual dispositions.</rdfs:comment>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000456">
+ <rdfs:label xml:lang="en">immunosuppressed organism</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An organism that is experiencing
pregnancy-induced or pathologic immunosuppression.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000457">
+ <rdfs:label xml:lang="en">immunocompetent organism</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An organism that has
immunocompetence.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000458">
+ <rdfs:label xml:lang="en">contagiousness</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>Highly contagious infections, those with a
relatively high likelihood of spread, are referred to as contagious and are
those for which spread is likely as a result of day-to-day activities of
the host.</rdfs:comment>
+ <rdfs:comment>The disposition is realized in a horizontal
transmission process.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A disposition that inheres in a
host of infectious agent and is a disposition to transmit infectious agents
to organisms of the same Species through casual contact with a high
likelihood of realization.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000459">
+ <rdfs:label xml:lang="en">colonized host</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An organism that contains a colony
in or on its extended organism.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000460">
+ <rdfs:label xml:lang="en">infected organism</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An organism that has an infection
in or on its extended organism.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000461">
+ <rdfs:label xml:lang="en">co-infected organism</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000460"/>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An organism that has two infections
with distinct Species of infectious agents.</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
***The diff for this file has been truncated for email.***
=======================================
--- /dev/null
+++ /releases/2014-08-01/ido-external-by-hand.owl Fri Aug 1 17:28:40 2014
UTC
@@ -0,0 +1,314 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.org/obo/owl/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:oboContent="http://purl.org/obo/owl/"
xmlns:oban="http://purl.org/obo/oban/"
xmlns:owl11="http://www.w3.org/2006/12/owl11#onClass"
xmlns:owl2="http://www.w3.org/2006/12/owl2#onClass"
xmlns:obo="http://purl.org/obo/owl/obo#"
xml:base="http://purl.org/obo/owl/ro_proposed">
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <owl:ObjectProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/ido-external-by-hand.owl">
+ <oboInOwl:savedBy>alanr</oboInOwl:savedBy>
+
<oboInOwl:hasDefaultNamespace>relationship</oboInOwl:hasDefaultNamespace>
+ <rdfs:comment>Alan Ruttenberg: This is subset for use in IDO. part_of
is changed to ro relation uri</rdfs:comment>
+ <rdfs:comment>This ontology consists of relation that are NOT YET
finalized. Definitions may change without concomittant ID
changes</rdfs:comment>
+ <rdfs:label>relationship</rdfs:label>
+ <rdfs:comment>
+ This is an OWL translation of an ontology whose native
representational form is .obo. The translation was performed using the
oboInOwl xslt library. For details, see
http://www.berkeleybop.org/obo-conv.cgi
+ </rdfs:comment>
+ </owl:Ontology>
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_disposition">
+ <rdfs:label xml:lang="en">has_disposition</rdfs:label>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ </owl:ObjectProperty>
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_output">
+ <rdfs:label xml:lang="en">has_output</rdfs:label>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Examples: secretory
cells. Should this be has_function (export of ...)</rdfs:comment>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">C has_output C'</rdfs:label>
+ <oboInOwl:hasDbXref>
+ <oboInOwl:DbXref>
+ <rdfs:label>GOC:cjm</rdfs:label>
+ <oboInOwl:hasURI
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/obo/owl/GOC#GOC_cjm</oboInOwl:hasURI>
+ </oboInOwl:DbXref>
+ </oboInOwl:hasDbXref>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ </owl:ObjectProperty>
+
+ <owl:ObjectProperty rdf:about="http://purl.org/obo/owl/OBO_REL#has_role">
+ <rdfs:label xml:lang="en">has_role</rdfs:label>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">A relation between a continuant C and a
role R. The reciprocal relation of role_of.</rdfs:label>
+ <oboInOwl:hasDbXref>
+ <oboInOwl:DbXref>
+ <rdfs:label>GOC:cjm</rdfs:label>
+ <oboInOwl:hasURI
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/obo/owl/GOC#GOC_cjm</oboInOwl:hasURI>
+ </oboInOwl:DbXref>
+ </oboInOwl:hasDbXref>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ <oboInOwl:hasAlternativeId>OBO_REL:0000033</oboInOwl:hasAlternativeId>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.org/obo/owl/OBO_REL#bearer_of"/>
+ </owl:ObjectProperty>
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#inheres_in">
+ <rdfs:label xml:lang="en">inheres_in</rdfs:label>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This relation links
qualities, functions, dispositions and other dependent continuants to their
bearers. Examples: A particular shape that inheres in a lung; The redness
that ineres in a Drosophila eye; Catalytic activity function inheres_in
catalytic molecule. Note that inherence is a functional relation: if x
inheres_in y at t and x inheres_in z at t, then y=z. We leave open the
possibility of a relation multiply_inheres_in, such as between a gene
sequence and the multiple chromosomes it multiply inheres in. The
super-relation of both inheres_in and multiply_inheres_in would be
depends_on</rdfs:comment>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">A relation between a dependent
continuant D and an entity E. D inheres_in E iff: given any d that
instantiates D at t, there exists some e that instantiates E at t and d
*inheres_in* e at t. Here *inheres_in* is the primitive instance level
relation.</rdfs:label>
+ <oboInOwl:hasDbXref>
+ <oboInOwl:DbXref>
+ <rdfs:label>GOC:cjm</rdfs:label>
+ <oboInOwl:hasURI
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/obo/owl/GOC#GOC_cjm</oboInOwl:hasURI>
+ </oboInOwl:DbXref>
+ </oboInOwl:hasDbXref>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasExactSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">has_bearer</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ <oboInOwl:hasAlternativeId>OBO_REL:0000026</oboInOwl:hasAlternativeId>
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
+ </owl:ObjectProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#bearer_of">
+ <rdfs:label xml:lang="en">bearer_of</rdfs:label>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Examples: red eye
bearer_of redness</rdfs:comment>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">A relation between an entity and a
dependent continuant; the reciprocal relation of inheres_in</rdfs:label>
+ <oboInOwl:hasDbXref>
+ <oboInOwl:DbXref>
+ <rdfs:label>GOC:cjm</rdfs:label>
+ <oboInOwl:hasURI
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/obo/owl/GOC#GOC_cjm</oboInOwl:hasURI>
+ </oboInOwl:DbXref>
+ </oboInOwl:hasDbXref>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasExactSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">has_inherent</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">has_inherer</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ <oboInOwl:hasAlternativeId>OBO_REL:0000027</oboInOwl:hasAlternativeId>
+ </owl:ObjectProperty>
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#negatively_regulates">
+ <rdfs:label xml:lang="en">negatively_regulates</rdfs:label>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">A regulation relation in which the
unfolding of the regulating process *decreases* the frequency, rate or
extent of the regulated process</rdfs:label>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.org/obo/owl/OBO_REL#regulates"/>
+ <owl:propertyChainAxiom rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
+ <rdf:Description
rdf:about="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ </owl:propertyChainAxiom>
+ </owl:ObjectProperty>
+
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#unfolds_in">
+ <rdfs:label xml:lang="en">unfolds_in</rdfs:label>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Example: oocyte axis
determination : The establishment, maintenance and elaboration of an axis
in the oocyte. This process unfolds_in the oocyte</rdfs:comment>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">P unfolds_in C : the execution of P is
spatially contained by C. forall pP, forall c' partipates_in p, c'
located_in C at t, for some t in P</rdfs:label>
+ <oboInOwl:hasDbXref>
+ <oboInOwl:DbXref>
+ <rdfs:label>GOC:cjm</rdfs:label>
+ <oboInOwl:hasURI
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/obo/owl/GOC#GOC_cjm</oboInOwl:hasURI>
+ </oboInOwl:DbXref>
+ </oboInOwl:hasDbXref>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ </owl:ObjectProperty>
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#positively_regulates">
+ <rdfs:label xml:lang="en">positively_regulates</rdfs:label>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">A regulation relation in which the
unfolding of the regulating process *increases* the frequency, rate or
extent of the regulated process</rdfs:label>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.org/obo/owl/OBO_REL#regulates"/>
+ <owl:propertyChainAxiom rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/OBO_REL#positively_regulates"/>
+ <rdf:Description
rdf:about="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ </owl:propertyChainAxiom>
+ </owl:ObjectProperty>
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realized_by">
+ <rdfs:label xml:lang="en">realized_by</rdfs:label>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NOTE: there appears
to be some consistency in usage as to whether processes or continuants
realize</rdfs:comment>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">Relation between a realizable and a
process. Reciprocal relation of realizes</rdfs:label>
+ <oboInOwl:hasDbXref>
+ <oboInOwl:DbXref>
+ <rdfs:label>GOC:cjm</rdfs:label>
+ <oboInOwl:hasURI
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/obo/owl/GOC#GOC_cjm</oboInOwl:hasURI>
+ </oboInOwl:DbXref>
+ </oboInOwl:hasDbXref>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasRelatedSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">executed_during</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasRelatedSynonym>
+ <oboInOwl:hasExactSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">has_realization</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+
<oboInOwl:hasAlternativeId>OBO_REL:realized_as</oboInOwl:hasAlternativeId>
+ <oboInOwl:hasAlternativeId>OBO_REL:0000035</oboInOwl:hasAlternativeId>
+ </owl:ObjectProperty>
+
+ <owl:ObjectProperty rdf:about="http://purl.org/obo/owl/OBO_REL#realizes">
+ <rdfs:label xml:lang="en">realizes</rdfs:label>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The process
of 'histidine catabolism' (GO:0006548) realizes the function 'histidine
ammonia lyase activity' (GO:0004397) (note: here 'activity' denotes a
function and not a process). We leave open the possibility of defining in
future the sub-relations directly_realizes (as bewteen a function and it's
functioning) and indirectly_realizes. NOTE: there appears to be some
consistency in usage as to whether processes or continuants
realize</rdfs:comment>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">Relation between a process and a
function, where the unfolding of the process requires the execution of the
function. Class level: P realizes F iff: given any p that instantiates P,
there exists some f, t such that f instantiates F at t and p *realizes* f.
Here, *realizes* is the primitive instance level relation</rdfs:label>
+ <oboInOwl:hasDbXref>
+ <oboInOwl:DbXref>
+ <rdfs:label>GOC:cjm</rdfs:label>
+ <oboInOwl:hasURI
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/obo/owl/GOC#GOC_cjm</oboInOwl:hasURI>
+ </oboInOwl:DbXref>
+ </oboInOwl:hasDbXref>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasRelatedSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">executes</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasRelatedSynonym>
+ <oboInOwl:hasRelatedSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">involves_execution_of</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasRelatedSynonym>
+ <oboInOwl:hasExactSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">is_realization_of</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">has_function_part</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ <oboInOwl:hasAlternativeId>OBO_REL:0000034</oboInOwl:hasAlternativeId>
+ </owl:ObjectProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realized_by">
+ <rdfs:label xml:lang="en">realized_by</rdfs:label>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NOTE: there appears
to be some consistency in usage as to whether processes or continuants
realize</rdfs:comment>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">Relation between a realizable and a
process. Reciprocal relation of realizes</rdfs:label>
+ <oboInOwl:hasDbXref>
+ <oboInOwl:DbXref>
+ <rdfs:label>GOC:cjm</rdfs:label>
+ <oboInOwl:hasURI
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/obo/owl/GOC#GOC_cjm</oboInOwl:hasURI>
+ </oboInOwl:DbXref>
+ </oboInOwl:hasDbXref>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasRelatedSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">executed_during</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasRelatedSynonym>
+ <oboInOwl:hasExactSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">has_realization</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+
<oboInOwl:hasAlternativeId>OBO_REL:realized_as</oboInOwl:hasAlternativeId>
+ <oboInOwl:hasAlternativeId>OBO_REL:0000035</oboInOwl:hasAlternativeId>
+ </owl:ObjectProperty>
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#results_in_formation_of">
+ <rdfs:label xml:lang="en">results_in_formation_of</rdfs:label>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Example: autophagic
vacuole formation results_in_formation_of autophagic vacuole.
macromolecular complex assembly results_in_formation_of a macromolecule.
Note: essentially the same as biosynthesis, although in biosynthesis the
assembly is via chemical reactions</rdfs:comment>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">P results_in_formation_of C : any
instance of P gives rise to a C from the parts of C. Formally: forall pP,
exists some c such that c instantiates C at end-of p, and c has some parts
c1, c2, ... such that the parts are connected at the end-of p and
disconected at the start-of p</rdfs:label>
+ <oboInOwl:hasDbXref>
+ <oboInOwl:DbXref>
+ <rdfs:label>GOC:cjm</rdfs:label>
+ <oboInOwl:hasURI
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/obo/owl/GOC#GOC_cjm</oboInOwl:hasURI>
+ </oboInOwl:DbXref>
+ </oboInOwl:hasDbXref>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasExactSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">results_in_creation_of</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym>
+ <oboInOwl:Synonym>
+ <rdfs:label xml:lang="en">results_in_assembly_of</rdfs:label>
+ </oboInOwl:Synonym>
+ </oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ </owl:ObjectProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#regulates">
+ <rdfs:label xml:lang="en">regulates</rdfs:label>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">A relation between a process and a
process or quality. A regulates B if the unfolding of A affects the
frequency, rate or extent of B. A is called the regulating process, B the
regulates process</rdfs:label>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ <owl:propertyChainAxiom rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/OBO_REL#regulates"/>
+ <rdf:Description
rdf:about="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ </owl:propertyChainAxiom>
+ </owl:ObjectProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_function">
+ <rdfs:label xml:lang="en">has_function</rdfs:label>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">heart has_function
to-pump-blood</rdfs:comment>
+ <oboInOwl:hasDefinition>
+ <oboInOwl:Definition>
+ <rdfs:label xml:lang="en">Relation between an independent
continuant and a function.</rdfs:label>
+ <oboInOwl:hasDbXref>
+ <oboInOwl:DbXref>
+ <rdfs:label>GOC:cjm</rdfs:label>
+ <oboInOwl:hasURI
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/obo/owl/GOC#GOC_cjm</oboInOwl:hasURI>
+ </oboInOwl:DbXref>
+ </oboInOwl:hasDbXref>
+ </oboInOwl:Definition>
+ </oboInOwl:hasDefinition>
+ <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
+ <oboInOwl:hasAlternativeId>OBO_REL:0000031</oboInOwl:hasAlternativeId>
+ </owl:ObjectProperty>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000178">
+ <rdfs:label xml:lang="en">blood</rdfs:label>
+ </owl:Class>
+
+
+
+
+
+</rdf:RDF>
=======================================
--- /dev/null
+++ /releases/2014-08-01/ido-external-derived.owl Fri Aug 1 17:28:40 2014
UTC
@@ -0,0 +1,371 @@
+<?xml version="1.0"?>
+<rdf:RDF
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:obi="http://purl.obolibrary.org/obo/"
+
xmlns:protege-dc="http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl#"
+ xmlns:ncbitax="http://purl.org/obo/owl/NCBITaxon#"
+ xmlns:daml="http://www.daml.org/2001/03/daml+oil#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:dcterms="http://purl.org/dc/terms/"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+ xmlns:pato="http://purl.org/obo/owl/PATO#"
+ xmlns:cell="http://purl.org/obo/owl/CL#"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:envo="http://purl.org/obo/owl/ENVO#"
+ xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
+ xmlns:caro="http://purl.org/obo/owl/CARO#"
+ xmlns:robfo="http://purl.org/obo/owl/ro_bfo_bridge/1.1#"
+ xmlns:rotoo="http://purl.org/obo/owl/ro#"
+ xmlns:pro="http://purl.org/obo/owl/PRO#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:so="http://purl.org/obo/owl/SO#"
+ xmlns:go="http://purl.org/obo/owl/GO#"
+ xmlns:chebi="http://purl.org/obo/owl/CHEBI#"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xml:base="http://purl.obolibrary.org/obo/ido/ido-external-derived.owl">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/ido-external-derived.owl"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0045087">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Innate immune responses are defense responses mediated by germline
encoded components that directly recognize components of potential
pathogens.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >innate immune response</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >innate immune response</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000020">
+ <obi:IAO_0000111>symptom</obi:IAO_0000111>
+ <rdfs:label>symptom</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">A quality of a patient that is observed
by the patient or a processual entity experienced by the patient, either of
which is hypothesized by the patient to be a realization of a
disease.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process specifically pertinent to the functioning of integrated
living units: cells, tissues, organs, and organisms. A process is a
collection of molecular events with a defined beginning and
end.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >biological_process</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >biological_process</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085031">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An interaction between two organisms living together in more or less
intimate association in a relationship in which one benefits and the other
is unaffected.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >commensalism</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >commensalism</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2759">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Eukaryota</rdfs:label>
+ <rdfs:label xml:lang="en">Eukaryota</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000087">
+ <obi:IAO_0000115 xml:lang="en">An object aggregate consisting of an
organism and all material entities located within the organism, overlapping
the organism, or occupying sites formed in part by the
organism.</obi:IAO_0000115>
+ <obi:IAO_0000111>extended organism</obi:IAO_0000111>
+ <rdfs:label>extended organism</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0043093">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >cytokinesis by binary fission</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A cytokinesis process that involves a set of conserved proteins
including FtsZ, and results in the formation of two similarly sized and
shaped cells; the process in which prokaryotic cells
divide.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >cytokinesis by binary fission</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000000">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >transmission process</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A process that is the means during which the pathogen is transmitted
directly or indirectly from its natural reservoir, a susceptible host or
source to a new host.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >transmission process</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0016265">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A permanent cessation of all vital functions: the end of life; can be
applied to a whole organism or to a part of an organism.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >death</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >death</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051234">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >establishment of localization</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >The directed movement of a cell, substance or cellular entity, such
as a protein complex or organelle, to a specific location.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >establishment of localization</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0065007">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >biological regulation</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >biological regulation</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process that modulates a measurable attribute of any biological
process, quality or function.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000002">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >indirect</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Indirect transmission is a transmission process during which the
pathogen is indirectly transferred from a reservoir, source or host to
another host by intermediary vehicles, vectors or as airborne dust
particles.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >indirect</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006959">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >humoral immune response</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An immune response mediated through a body fluid.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >humoral immune response</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006955">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any immune system process that functions in the calibrated response
of an organism to a potential internal or invasive threat.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >immune response</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >immune response</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000045">
+ <obi:IAO_0000111>disorder</obi:IAO_0000111>
+ <rdfs:label>disorder</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">A material entity which is clinically
abnormal and part of an extended organism. Disorders are the physical basis
of disease.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0000003">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >reproduction</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >The production by an organism of new individuals that contain some
portion of their genetic material inherited from that
organism.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >reproduction</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10239">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Virus</rdfs:label>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Viruses</rdfs:label>
+ <rdfs:label xml:lang="en">Viruses</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032991">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A stable assembly of two or more macromolecules, i.e. proteins,
nucleic acids, carbohydrates or lipids, in which the constituent parts
function together.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >macromolecular complex</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >macromolecular complex</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000031">
+ <obi:IAO_0000115 xml:lang="en">A disposition (i) to undergo
pathological processes that (ii) exists in an organism because of one or
more disorders in that organism.</obi:IAO_0000115>
+ <obi:IAO_0000111>disease</obi:IAO_0000111>
+ <rdfs:label>disease</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044406">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >adhesion to host</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >adhesion to host</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >The attachment of an organism to its host via adhesion molecules,
general stickiness etc., either directly or indirectly. The host is defined
as the larger of the organisms involved in a symbiotic
interaction.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019815">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >B cell receptor complex</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >B cell receptor complex</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An immunoglobulin complex that is present in the plasma membrane of B
cells and that in its canonical form is composed of two identical
immunoglobulin heavy chains and two identical immunoglobulin light chains
and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta
proteins.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0042101">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >T cell receptor complex</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A protein complex that contains a disulfide-linked heterodimer of T
cell receptor (TCR) chains, which are members of the immunoglobulin
superfamily, and mediates antigen recognition, ultimately resulting in T
cell activation. The TCR heterodimer is associated with the CD3 complex,
which consists of the nonpolymorphic polypeptides gamma, delta, epsilon,
zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon
chains.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >T cell receptor complex</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0040007">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >growth</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >The increase in size or mass of an entire organism, a part of an
organism or a cell.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >growth</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33154">
+ <obi:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Opisthokonta</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Opisthokonta</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100026">
+ <obi:IAO_0000115 xml:lang="en">A material entity that is an individual
living system, such as animal, plant, bacteria or virus, that is capable of
replicating or reproducing, growth and maintenance in the right
environment. An organism may be unicellular or made up, like humans, of
many billions of cells divided into specialized tissues and
organs.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">organism</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">organism</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085030">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An interaction between two organisms living together in more or less
intimate association in a relationship in which both organisms benefit from
each other.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >mutualism</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >mutualism</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >cell</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >cell</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A material entity of anatomical origin (part of or deriving from an
organism) that has as its parts a maximally connected cell compartment
surrounded by a plasma membrane.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Bacteria</rdfs:label>
+ <rdfs:label xml:lang="en">Bacteria</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051704">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >multi-organism process</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >multi-organism process</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A biological process which involves another organism of the same or
different species.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051093">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process that stops, prevents or reduces the rate or extent of
development, the biological process whose specific outcome is the
progression of an organism over time from an initial condition (e.g. a
zygote, or a young adult) to a later condition (e.g. a multicellular animal
or an aged adult).</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of developmental process</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of developmental process</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002250">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An immune response based on directed amplification of specific
receptors for antigen produced through a somatic diversification process,
and allowing for enhanced response to subsequent exposures to the same
antigen (immunological memory).</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >adaptive immune response</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >adaptive immune response</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044403">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >symbiosis, encompassing mutualism through parasitism</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >symbiosis, encompassing mutualism through parasitism</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An interaction between two organisms living together in more or less
intimate association. The term host is usually used for the larger (macro)
of the two members of a symbiosis. The smaller (micro) member is called the
symbiont organism. Microscopic symbionts are often referred to as
endosymbionts. The various forms of symbiosis include parasitism, in which
the association is disadvantageous or destructive to one of the organisms;
mutualism, in which the association is advantageous, or often necessary to
one or both and not harmful to either; and commensalism, in which one
member of the association benefits while the other is not affected.
However, mutualism, parasitism, and commensalism are often not discrete
categories of interactions and should rather be perceived as a continuum of
interaction ranging from parasitism to mutualism. In fact, the direction of
a symbiotic interaction can change during the lifetime of the symbionts due
to developmental changes as well as changes in the biotic/abiotic
environment in which the interaction occurs.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044411">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >entry into host through host barriers</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Penetration by an organism into its host organism via active
breaching of the physical barriers of the host organism. The host is
defined as the larger of the organisms involved in a symbiotic
interaction.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >entry into host through host barriers</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0048525">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of viral reproduction</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process that stops, prevents, or reduces the frequency, rate or
extent of the viral life cycle, the set of processes by which a virus
reproduces and spreads among hosts.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of viral reproduction</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000178">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >blood</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Circulating body substance which consists of blood plasma and
hemoglobin-carrying red blood cells. Excludes blood analogues (see
UBERON:0000179 haemolymphatic fluid).</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >blood</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_00002036">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >habitat</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >habitat</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A spatial region having environmental qualities which may sustain an
organism or a community of organisms.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032502">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >developmental process</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A biological process whose specific outcome is the progression of an
integrated living unit: an anatomical structure (which may be a subcellular
structure, cell, tissue, or organ), or organism over time from an initial
condition to a later condition.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >developmental process</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0000000">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Biological entity that is either an individual member of a biological
species or constitutes the structural organization of an individual member
of a biological species.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >anatomical entity</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >anatomical entity</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000738">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >leukocyte</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >leukocyte</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An achromatic cell of the myeloid or lymphoid lineages capable of
ameboid movement, found in blood or other tissue.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0050777">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of immune response</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process that stops, prevents, or reduces the frequency, rate or
extent of the immune response, the immunological reaction of an organism to
an immunogenic stimulus.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of immune response</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044409">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >entry into host</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >entry into host</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Penetration by an organism into the body, tissues, or cells of the
host organism. The host is defined as the larger of the organisms involved
in a symbiotic interaction.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019814">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >immunoglobulin complex</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A protein complex that in its canonical form is composed of two
identical immunoglobulin heavy chains and two identical immunoglobulin
light chains, held together by disulfide bonds and sometimes complexed with
additional proteins. An immunoglobulin complex may be embedded in the
plasma membrane or present in the extracellular space, in mucosal areas or
other tissues, or circulating in the blood or lymph.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >immunoglobulin complex</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002443">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process involved in the carrying out of an immune response by a
leukocyte.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >leukocyte mediated immunity</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >leukocyte mediated immunity</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2157">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Archaea</rdfs:label>
+ <rdfs:label xml:lang="en">Archaea</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000063">
+ <obi:IAO_0000111>disease course</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">The totality of all processes through
which a given disease instance is realized.</obi:IAO_0000115>
+ <rdfs:label>disease course</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >molecular entity</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >molecular entity</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any constitutionally or isotopically distinct atom, molecule, ion,
ion pair, radical, radical ion, complex, conformer etc., identifiable as a
separately distinguishable entity.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
+</rdf:RDF>
=======================================
--- /dev/null
+++ /releases/2014-08-01/ido-external.owl Fri Aug 1 17:28:40 2014 UTC
@@ -0,0 +1,470 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/"
+ xml:base="http://purl.obolibrary.org/obo/"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/ido-external.owl">
+ <rdfs:comment >This file is the MIREOT specification file - see
http://obi-ontology.org/page/MIREOT</rdfs:comment>
+ </owl:Ontology>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100026">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000020">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000031">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000045">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000063">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000087">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0000000">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/caro.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/chebi.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000738">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_00002036">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/envo.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0000003">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002250">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0006955"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002443">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0006955"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006955">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006959">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0006955"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0016265">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019814">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0032991"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019815">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0032991"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032502">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0040007">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0042101">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0032991"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0043093">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0000003"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044403">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0051704"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044406">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044409">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0051704"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044411">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0044409"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0045087">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0006955"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0048525">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0065007"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0050777">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0065007"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051093">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0065007"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051234">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051704">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0065007">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085030">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0044403"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085031">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0044403"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10239">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2759">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33154">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000000">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/trans.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000002">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/trans.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000016"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000019"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000029"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032991">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+ </owl:Class>
+
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000178">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
+ </owl:Class>
+</rdf:RDF>
+
+
+
+
+
+
=======================================
--- /dev/null
+++ /releases/2014-08-01/ido-main.owl Fri Aug 1 17:28:40 2014 UTC
@@ -0,0 +1,4774 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/ido/ido-axioms.owl#"
+ xml:base="http://purl.obolibrary.org/obo/ido/ido-axioms.owl"
+ xmlns:TRANS="http://purl.obolibrary.org/obo/"
+ xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
+ xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#">
+ <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ido.owl">
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/ido-base.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/ido-external-by-hand.owl"/>
+ <owl:imports rdf:resource="http://www.obofoundry.org/ro/ro.owl"/>
+ </owl:Ontology>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
+
+
+
+ 
+
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IDO_0000660">
+ <rdfs:label xml:lang="en">results_in</rdfs:label>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IDO_0000661">
+ <rdfs:label xml:lang="en">capable_of</rdfs:label>
+ <TRANS:IAO_0000116 xml:lang="en">This is consistent with the
'capable_of' relation as introduced by the cell ontology
(CL).</TRANS:IAO_0000116>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IDO_0000664">
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#bearer_of">
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
+ <owl:inverseOf
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_disposition">
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.org/obo/owl/OBO_REL#bearer_of"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_function">
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.org/obo/owl/OBO_REL#bearer_of"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_output"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_role">
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#positively_regulates"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realized_by">
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
+ <owl:inverseOf
rdf:resource="http://purl.org/obo/owl/OBO_REL#realizes"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realizes"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#results_in_formation_of">
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000660"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#unfolds_in">
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <rdfs:range>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000029"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
+ </owl:unionOf>
+ </owl:Class>
+ </rdfs:range>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#contained_in">
+ <owl:inverseOf
rdf:resource="http://www.obofoundry.org/ro/ro.owl#contains"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#contains"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#derived_into">
+ <owl:inverseOf
rdf:resource="http://www.obofoundry.org/ro/ro.owl#derives_from"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#derives_from"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#has_part"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#has_participant">
+ <owl:inverseOf
rdf:resource="http://www.obofoundry.org/ro/ro.owl#participates_in"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#located_in"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#location_of"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#participates_in"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
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+ </owl:someValuesFrom>
+ </owl:Restriction>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000002"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </rdfs:subClassOf>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000424"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000430"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000431"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000432"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000433"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000434"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000435"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000629"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000635"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000418">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000417"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#location_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000596"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000002"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000419">
+ <rdfs:subClassOf>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000418"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#location_of"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000596"/>
+ <owl:Class>
+ <owl:complementOf>
+
<owl:Restriction>
+
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IDO_0000661"/>
+
<owl:someValuesFrom>
+
<owl:Class>
+
<owl:intersectionOf rdf:parseType="Collection">
+
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/GO_0000003"/>
+
<owl:Restriction>
+
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#unfolds_in"/>
+
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
+
</owl:Restriction>
+
</owl:intersectionOf>
+
</owl:Class>
+
</owl:someValuesFrom>
+
</owl:Restriction>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000002"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </rdfs:subClassOf>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000420">
+ <rdfs:subClassOf>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000418"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf
rdf:parseType="Collection">
***The diff for this file has been truncated for email.***
=======================================
--- /dev/null
+++ /releases/2014-08-01/ido-obsolete.owl Fri Aug 1 17:28:40 2014 UTC
@@ -0,0 +1,1695 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/ido.owl#"
+ xml:base="http://purl.obolibrary.org/obo/ido.owl"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:CARO="http://purl.org/obo/owl/CARO#"
+ xmlns:NCBITaxon="http://purl.org/obo/owl/NCBITaxon#"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:GO="http://purl.org/obo/owl/GO#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
+ xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+ xmlns:TRANS="http://purl.org/obo/owl/TRANS#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/ido-obsolete.owl">
+ </owl:Ontology>
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/creator"/>
+ <owl:AnnotationProperty
rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/OBI_0000283"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/date"/>
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000000">
+ <rdfs:label xml:lang="en">_obsolete_process</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000001">
+ <rdfs:label xml:lang="en">_obsolete_role</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000002">
+ <rdfs:label xml:lang="en">_obsolete_quality</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000003">
+ <rdfs:label xml:lang="en">_obsolete_object</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000004">
+ <rdfs:label xml:lang="en">_obsolete_virulence</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'the degree of
pathogenicitynnpathogenicity and virulence are used in some communities as
synonyms.'-ID[O]:0000004: the degree of pathogenicitynnpathogenicity
and virulence are used in some communities as synonyms.</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id
'virulence'-ID[O]:0000004 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000005">
+ <rdfs:label xml:lang="en">_obsolete_swollen</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000006">
+ <rdfs:label xml:lang="en">_obsolete_toxicity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000007">
+ <rdfs:label xml:lang="en">_obsolete_active</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000008">
+ <rdfs:label xml:lang="en">_obsolete_contagious</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000009">
+ <rdfs:label xml:lang="en">_obsolete_latency</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'infection has occurred, but it
might not have manifested itselfnquality of being in a non replicative
statentime to manifest itself na pathogen when it is in a non replicative
state'-ID[O]:0000009: infection has occurred, but it might not have
manifested itselfnquality of being in a non replicative statentime to
manifest itself na pathogen when it is in a non replicative
state</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id 'latency'-ID[O]:0000009
from IDO 2007. May have replacement - TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000010">
+ <rdfs:label xml:lang="en">_obsolete_immunosuppressed</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000011">
+ <rdfs:label xml:lang="en">_obsolete_exogenous</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000012">
+ <rdfs:label xml:lang="en">_obsolete_immunity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000013">
+ <rdfs:label xml:lang="en">_obsolete_protective</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000015">
+ <rdfs:label xml:lang="en">_obsolete_temperature</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000016">
+ <rdfs:label xml:lang="en">_obsolete_inactivated</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000017">
+ <rdfs:label xml:lang="en">_obsolete_mortality</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000018">
+ <rdfs:label xml:lang="en">_obsolete_pandemic</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000019">
+ <rdfs:label xml:lang="en">_obsolete_prevalence</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'total number of cases of a
particular disease at a given time in a particular population divided by
the number of individuals in that particular populationnnthe burden of a
disease in a population'-ID[O]:0000019: total number of cases of a
particular disease at a given time in a particular population divided by
the number of individuals in that particular populationnnthe burden of a
disease in a population</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id
'prevalence'-ID[O]:0000019 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000020">
+ <rdfs:label xml:lang="en">_obsolete_epidemic</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000021">
+ <rdfs:label xml:lang="en">_obsolete_infected</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000022">
+ <rdfs:label xml:lang="en">_obsolete_live</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000023">
+ <rdfs:label xml:lang="en">_obsolete_zoonotic</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000024">
+ <rdfs:label xml:lang="en">_obsolete_immunocompromised</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000025">
+ <rdfs:label xml:lang="en">_obsolete_pathogenicity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'the ability of the biotic
entity to cause disease in a host of a given typenndo we need to say damage
instead of disease?nnpathogenicity and virulence are used as synonyms in
some communities'-ID[O]:0000025: the ability of the biotic entity to
cause disease in a host of a given typenndo we need to say damage instead
of disease?nnpathogenicity and virulence are used as synonyms in some
communities</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id
'pathogenicity'-ID[O]:0000025 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000026">
+ <rdfs:label xml:lang="en">_obsolete_tropism</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000027">
+ <rdfs:label xml:lang="en">_obsolete_drug resistance</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000028">
+ <rdfs:label xml:lang="en">_obsolete_antibiotic
resistance</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000029">
+ <rdfs:label xml:lang="en">_obsolete_incidence</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'number of new cases in a given
period of time'-ID[O]:0000029: number of new cases in a given period of
time</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id
'incidence'-ID[O]:0000029 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000030">
+ <rdfs:label xml:lang="en">_obsolete_invasive</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000031">
+ <rdfs:label xml:lang="en">_obsolete_endogenous</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000032">
+ <rdfs:label xml:lang="en">_obsolete_attenuated</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000033">
+ <rdfs:label xml:lang="en">_obsolete_morbidity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000034">
+ <rdfs:label xml:lang="en">_obsolete_endemic</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000035">
+ <rdfs:label xml:lang="en">_obsolete_fusion protein</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000036">
+ <rdfs:label xml:lang="en">_obsolete_colonizer</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000037">
+ <rdfs:label xml:lang="en">_obsolete_commensal</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000038">
+ <rdfs:label xml:lang="en">_obsolete_parasite</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000039">
+ <rdfs:label xml:lang="en">_obsolete_symbiant</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000040">
+ <rdfs:label xml:lang="en">_obsolete_virulence factor</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'role played by a portion of
substance to promote virulencennmagnitudendegree of
pathogenesis'-ID[O]:0000040: role played by a portion of substance to
promote virulencennmagnitudendegree of pathogenesis</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id 'virulence
factor'-ID[O]:0000040 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000041">
+ <rdfs:label xml:lang="en">_obsolete_route of entry</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000042">
+ <rdfs:label xml:lang="en">_obsolete_invasin</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000043">
+ <rdfs:label xml:lang="en">_obsolete_toxin</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000044">
+ <rdfs:label xml:lang="en">_obsolete_endotoxin</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000045">
+ <rdfs:label xml:lang="en">_obsolete_exotoxin</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000046">
+ <rdfs:label xml:lang="en">_obsolete_sign</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000047">
+ <rdfs:label xml:lang="en">_obsolete_treatment</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000048">
+ <rdfs:label xml:lang="en">_obsolete_symptom</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'look at mathias's ontology
of cancer to get all the subterms...its under quality
there'-ID[O]:0000048: look at mathias's ontology of cancer to get
all the subterms...its under quality there</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id 'symptom'-ID[O]:0000048
from IDO 2007. May have replacement - TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000049">
+ <rdfs:label xml:lang="en">_obsolete_antimicrobial</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000050">
+ <rdfs:label xml:lang="en">_obsolete_medicine</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000051">
+ <rdfs:label xml:lang="en">_obsolete_therapeutic</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000052">
+ <rdfs:label xml:lang="en">_obsolete_vaccine</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000053">
+ <rdfs:label xml:lang="en">_obsolete_antibiotic</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000054">
+ <rdfs:label xml:lang="en">_obsolete_colonization
factor</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'role played by portion of
physical substance which promotes colonization'-ID[O]:0000054: role
played by portion of physical substance which promotes
colonization</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id 'colonization
factor'-ID[O]:0000054 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000055">
+ <rdfs:label xml:lang="en">_obsolete_adhesion factor</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'role played by portion of
physical substance utilized by an organism in order to establish adherence
to a surface in a host'-ID[O]:0000055: role played by portion of
physical substance utilized by an organism in order to establish adherence
to a surface in a host</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id 'adhesion
factor'-ID[O]:0000055 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000056">
+ <rdfs:label xml:lang="en">_obsolete_host</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000057">
+ <rdfs:label xml:lang="en">_obsolete_carrier</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000058">
+ <rdfs:label xml:lang="en">_obsolete_chronic carrier</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000059">
+ <rdfs:label xml:lang="en">_obsolete_reservoir</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'holding place for a potential
pathogen...animate or inanimate'-ID[O]:0000059: holding place for a
potential pathogen...animate or inanimate</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id
'reservoir'-ID[O]:0000059 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000060">
+ <rdfs:label xml:lang="en">_obsolete_fomite</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'inanimate holder, is water a
fomite or only a reservoir?'-ID[O]:0000060: inanimate holder, is water
a fomite or only a reservoir?</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id 'fomite'-ID[O]:0000060
from IDO 2007. May have replacement - TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000061">
+ <rdfs:label xml:lang="en">_obsolete_mobile genetic
element</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000062">
+ <rdfs:label xml:lang="en">_obsolete_pathogenicity
island</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000063">
+ <rdfs:label xml:lang="en">_obsolete_vector</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'holder and a carrier (actively
transmits) and living: potentially make a cross product. every vector
comes into contact with the target. (from one host to
another?)'-ID[O]:0000063: holder and a carrier (actively transmits) and
living: potentially make a cross product. every vector comes into contact
with the target. (from one host to another?)</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id 'vector'-ID[O]:0000063
from IDO 2007. May have replacement - TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000064">
+ <rdfs:label xml:lang="en">_obsolete_pathogen</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000065">
+ <rdfs:label xml:lang="en">_obsolete_dependovirus</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000066">
+ <rdfs:label xml:lang="en">_obsolete_infectious agent</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000067">
+ <rdfs:label xml:lang="en">_obsolete_opportunistic
pathogen</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000068">
+ <rdfs:label xml:lang="en">_obsolete_emerging pathogen</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000069">
+ <rdfs:label xml:lang="en">_obsolete_primary pathogen</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000070">
+ <rdfs:label xml:lang="en">_obsolete_prion</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000071">
+ <rdfs:label xml:lang="en">_obsolete_initiation of
infection</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000072">
+ <rdfs:label xml:lang="en">_obsolete_disruption of body
surface</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000073">
+ <rdfs:label xml:lang="en">_obsolete_disruption of normal
microbioflora</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000074">
+ <rdfs:label xml:lang="en">_obsolete_pathogen adherence to host
cell</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'create cross products for
"host" and "pathogen" that will be part of this
process.'-ID[O]:0000074: create cross products for "host" and
"pathogen" that will be part of this process.</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id 'pathogen adherence to host
cell'-ID[O]:0000074 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000075">
+ <rdfs:label xml:lang="en">_obsolete_nonspecific
adherence</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000076">
+ <rdfs:label xml:lang="en">_obsolete_specific adherence</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000077">
+ <rdfs:label xml:lang="en">_obsolete_afimbrial specific
adherence</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000078">
+ <rdfs:label xml:lang="en">_obsolete_fimbrial specific
adherence</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000079">
+ <rdfs:label xml:lang="en">_obsolete_penetration of epithelial
barrier</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000080">
+ <rdfs:label xml:lang="en">_obsolete_penetration via injury of
epithelial barrier</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000081">
+ <rdfs:label xml:lang="en">_obsolete_transcytosis</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000082">
+ <rdfs:label xml:lang="en">_obsolete_utilization of membranous cell
gateway</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000083">
+ <rdfs:label xml:lang="en">_obsolete_transmission</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'the process by which an
infectious agent passes from one organism to another
organism'-ID[O]:0000083: the process by which an infectious agent
passes from one organism to another organism</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id
'transmission'-ID[O]:0000083 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000084">
+ <rdfs:label xml:lang="en">_obsolete_pathogenesis</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'GO:nthe specific processes
that generate the ability of an organism to cause disease in anothernnnThis
is defined in GO so import.'-ID[O]:0000084: GO:nthe specific processes
that generate the ability of an organism to cause disease in anothernnnThis
is defined in GO so import.</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id
'pathogenesis'-ID[O]:0000084 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000085">
+ <rdfs:label xml:lang="en">_obsolete_penetration of host
cell</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000086">
+ <rdfs:label xml:lang="en">_obsolete_engulfment</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000087">
+ <rdfs:label xml:lang="en">_obsolete_fusion with host cell
membrane</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000088">
+ <rdfs:label xml:lang="en">_obsolete_membrane
invagination</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000089">
+ <rdfs:label xml:lang="en">_obsolete_passage through cell
membrane</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000090">
+ <rdfs:label xml:lang="en">_obsolete_engulfment by
nonphagocyte</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000091">
+ <rdfs:label xml:lang="en">_obsolete_engulfment by
phagocyte</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000092">
+ <rdfs:label xml:lang="en">_obsolete_damaging host cells and
tissues in subepithelial space</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000093">
+ <rdfs:label xml:lang="en">_obsolete_induction of damaging host
immune response</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000094">
+ <rdfs:label xml:lang="en">_obsolete_pathogen-induced
apoptosis</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000095">
+ <rdfs:label xml:lang="en">_obsolete_pathogen-induced
necrosis</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000096">
+ <rdfs:label xml:lang="en">_obsolete_virus-induced
cytopathogenesis</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000097">
+ <rdfs:label xml:lang="en">_obsolete_pathogen spread through
host</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000098">
+ <rdfs:label xml:lang="en">_obsolete_infectious disease</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'comment about the
instances:nncollections of etiologically connected cases of infectious
disease in a given population'-ID[O]:0000098: comment about the
instances:nncollections of etiologically connected cases of infectious
disease in a given population</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id 'infectious
disease'-ID[O]:0000098 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000100">
+ <rdfs:label xml:lang="en">_obsolete_pathogen evasion of host
immune response</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000101">
+ <rdfs:label xml:lang="en">_obsolete_emergence</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <obo:IAO_0000115 xml:lang="en">'the process by which an
infectious disease establishes itself in a new population (or at a
sufficiently higher rate? higher prevalence and/or higher
incidence)'-ID[O]:0000101: the process by which an infectious disease
establishes itself in a new population (or at a sufficiently higher rate?
higher prevalence and/or higher incidence)</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">id
'emergence'-ID[O]:0000101 from IDO 2007. May have replacement -
TBD</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000102">
+ <rdfs:label xml:lang="en">_obsolete_epidemiological spread of
disease</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000103">
+ <rdfs:label xml:lang="en">_obsolete_outbreak</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ </owl:Class>
+
+
+
***The diff for this file has been truncated for email.***
=======================================
--- /dev/null
+++ /releases/2014-08-01/ido.obo Fri Aug 1 17:28:40 2014 UTC
@@ -0,0 +1,2604 @@
+format-version: 1.2
+date: 18:07:2010 23:28
+saved-by: generate-ido-obo
+auto-generated-by:
http://purl.obolibrary.org/obo/obi/repository/trunk/src/tools/build/generate-obo.lisp
+default-namespace: IDO
+idspace: RO http://www.obofoundry.org/ro/ro.owl# "OBO Relation ontology
official home on OBO Foundry"
+idspace: ROP http://purl.org/obo/owl/OBO_REL# "Relation ontology proposed
terms"
+idspace: PATO http://purl.org/obo/owl/PATO# "Phenotype Ontology"
+idspace: snap http://www.ifomis.org/bfo/1.1/snap# "BFO SNAP ontology
(continuants)"
+idspace: span http://www.ifomis.org/bfo/1.1/span# "BFO SPAN ontology
(occurrents)"
+idspace: OBI http://purl.obolibrary.org/obo/OBI_ "Ontology for Biomedical
Investigations"
+idspace: CHEBI http://purl.org/obo/owl/CHEBI# "Chemical Entities of
Biological Interest"
+idspace: CL http://purl.org/obo/owl/CL# "Cell Ontology"
+idspace: NCBITaxon http://purl.org/obo/owl/NCBITaxon# "NCBI Taxonomy"
+idspace: birn_anat
http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl# "NIF
Standard Anatomy"
+idspace: IAO http://purl.obolibrary.org/obo/IAO "Information Artifact
Ontology"
+idspace: BFO http://www.ifomis.org/bfo/1.1/ "Basic Formal Ontology"
+idspace: GO http://purl.org/obo/owl/GO# "Gene Ontology"
+idspace: FMA http://purl.org/obo/owl/FMA# "Foundational Model of Anatomy"
+idspace: PRO http://purl.org/obo/owl/PRO# "Protein Ontology"
+idspace: UO http://purl.org/obo/owl/UO# "Unit Ontology"
+idspace: ENVO http://purl.org/obo/owl/ENVO# "Environment Ontology"
+idspace: VO http://purl.obolibrary.org/obo/VO "Vaccine Ontology"
+idspace: SO http://purl.org/obo/owl/SO# "Sequence Ontology"
+idspace: HPO http://purl.org/obo/owl/HP# "Human Phenotype Ontology"
+remark: This file is a subset of IDO adequate for indexing using the OLS
service. It does not include all logical assertions present in the OWL
file, which can be obtained at http://purl.obolibrary.org/obo/ido.owl
+
+[Term]
+id: IDO:0000528
+name: pathogen
+def:"A material entity with a pathogenic disposition." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: snap:MaterialEntity ! material_entity
+
+[Term]
+id: span:SpatiotemporalInstant
+name: spatiotemporal_instant
+def:"Examples: the spatiotemporal region occupied by a single
instantaneous temporal slice (part) of a process; Definition: A connected
spatiotemporal region [span:ConnectedSpatiotemporalRegion] at a specific
moment." [OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: span:ConnectedSpatiotemporalRegion ! connected_spatiotemporal_region
+
+[Term]
+id: IDO:0000108
+name: _obsolete_transport by blood
+is_obsolete: true
+
+[Term]
+id: IDO:0000204
+name: _obsolete_factor
+def:"'Role played by portion of physical substance in a biological
process'-ID[O]:0000204: Role played by portion of physical substance in a
biological process" [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000425
+name: virulence factor disposition
+def:"A disposition borne by a biological macromolecule produced by a
pathogen that is the disposition to improve survival of the pathogen in a
host\, improve transmission of the pathogen to a host\, or cause
pathological processes in a host." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: snap:Disposition ! disposition
+
+[Term]
+id: IDO:0000540
+name: infectious agent vector
+def:"An organism bearing the infectious agent vector role."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: OBI:0100026 ! organism
+
+[Term]
+id: IDO:0000049
+name: _obsolete_antimicrobial
+is_obsolete: true
+
+[Term]
+id: IDO:0000494
+name: infectious disease sporadicicity
+def:"A quality that inheres in an organism population by virtue of the
fact that infections of the infectious agent that causes a certain type of
infectious disease occur in the population with a fluctuating prevalence."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: snap:Quality ! quality
+
+[Term]
+id: IDO:0000229
+name: _obsolete_oral-fecal transmission
+is_obsolete: true
+
+[Term]
+id: IDO:0000627
+name: acute infection
+def:"An infectious disorder that is the physical basis for an unfolding
acute infectious disease course." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000504 ! infectious disorder
+
+[Term]
+id: IDO:0000090
+name: _obsolete_engulfment by nonphagocyte
+is_obsolete: true
+
+[Term]
+id: IDO:0000071
+name: _obsolete_initiation of infection
+is_obsolete: true
+
+[Term]
+id: IDO:0000012
+name: _obsolete_immunity
+is_obsolete: true
+
+[Term]
+id: IDO:0000450
+name: pathogenic disposition
+def:"A disposition to initiate processes that result in a disorder."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: snap:Disposition ! disposition
+
+[Term]
+id: snap:MaterialEntity
+name: material_entity
+def:"Examples: collection of random bacteria\, a chair\, dorsal surface of
the body; Definition: An independent continuant
[snap:IndependentContinuant] that is spatially extended whose identity is
independent of that of other entities and can be maintained through time.
Note: Material entity [snap:MaterialEntity] subsumes object [snap:Object]\,
fiat object part [snap:FiatObjectPart]\, and object aggregate
[snap:ObjectAggregate]\, which assume a three level theory of granularity\,
which is inadequate for some domains\, such as biology."
[OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: snap:IndependentContinuant ! independent_continuant
+
+[Term]
+id: IDO:0000047
+name: _obsolete_treatment
+is_obsolete: true
+
+[Term]
+id: IDO:0000421
+name: infectious agent vehicle role
+def:"An infectious agent transporter role borne by an entity in virtue of
the fact that the entity is not a complete organism." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000417 ! infectious agent transporter role
+
+[Term]
+id: IDO:0000116
+name: _obsolete_complement resistance
+is_obsolete: true
+
+[Term]
+id: IDO:0000630
+name: hospital-acquired infection
+def:"An infection resulting from a transmission process that unfolds in a
hospital." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000586 ! infection
+
+[Term]
+id: IDO:0000538
+name: pathogen host
+def:"A host bearing the pathogen host role." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000531 ! host
+
+[Term]
+id: span:TemporalInterval
+name: temporal_interval
+def:"Examples: any continuous temporal duration during which a process
occurs; Definition: A connected temporal region
[span:ConnectedTemporalRegion] lasting for more than a single moment of
time." [OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: span:ConnectedTemporalRegion ! connected_temporal_region
+
+[Term]
+id: IDO:0000043
+name: _obsolete_toxin
+is_obsolete: true
+
+[Term]
+id: IDO:0000456
+name: immunosuppressed organism
+def:"An organism that is experiencing pregnancy-induced or pathologic
immunosuppression." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: OBI:0100026 ! organism
+
+[Term]
+id: IDO:0000402
+name: commensal role
+def:"A symbiont role borne by an organism in virtue of the fact that it
derives a growth\, survival\, or fitness advantage from symbiosis\, but the
other symbiont is neither advantaged nor disadvantaged." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000400 ! symbiont role
+
+[Term]
+id: IDO:0000550
+name: exotoxin
+def:"A biological macromolecule bearing the exotoxin disposition."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000549 ! toxin
+
+[Term]
+id: IDO:0000454
+name: reverse zoonotic disposition
+def:"An infectious disposition that is the disposition to be transmitted
from an infected\, human host to a non-human host." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000452 ! infectious disposition
+
+[Term]
+id: IDO:0000435
+name: secondary infection role
+def:"A role borne by an infectious disorder in virtue of the fact that (1)
the host has at least two distinct infectious disorders\, where neither
arose from the other through metastasis\, (2) at the time the infectious
disorder was established in the host\, the host had a primary infectious
disorder\, and (3) establishment of the infectious disorder occurs because
of increased susceptibility to infectious disorders conferred by the
primary infectious disorder." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: snap:Role ! role
+
+[Term]
+id: IDO:0000581
+name: antibiotic resistance
+def:"A resistance to drug that mitigates the damaging effects of an
antibiotic." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000445 ! resistance to drug
+
+[Term]
+id: IDO:0000479
+name: infectious disease incidence
+def:"A quality that inheres in an organism population and is the number of
realizations of an infectious disease for which the infectious disease
course begins during a specified period of time." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: snap:Quality ! quality
+
+[Term]
+id: IDO:0000083
+name: _obsolete_transmission
+def:"'the process by which an infectious agent passes from one organism to
another organism'-ID[O]:0000083: the process by which an infectious agent
passes from one organism to another organism" [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: span:SpatiotemporalInterval
+name: spatiotemporal_interval
+def:"Examples: the spatiotemporal region occupied by a process or by a
fiat processual part; Definition: A connected spatiotemporal region
[span:ConnectedSpatiotemporalRegion] that endures for more than a single
moment of time." [OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: span:ConnectedSpatiotemporalRegion ! connected_spatiotemporal_region
+
+[Term]
+id: IDO:0000596
+name: infectious agent
+def:"A pathogen whose pathogenic disposition is an infectious
disposition." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000528 ! pathogen
+
+[Term]
+id: span:ProcessualEntity
+name: processual_entity
+def:"Examples: the life of an organism\, the process of meiosis\, the
course of a disease\, the flight of a bird; Definition: An occurrent
[span:Occurrent] that exists in time by occurring or happening\, has
temporal parts and always involves and depends on some entity."
[OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: span:Occurrent ! occurrent
+
+[Term]
+id: IDO:0000452
+name: infectious disposition
+def:"A pathogenic disposition that inheres in a material entity and is the
disposition for that entity (1) to be transmitted to a host\, (2) to
establish itself in the host\, and (3) to become part of a disorder in the
host." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000450 ! pathogenic disposition
+
+[Term]
+id: IDO:0000594
+name: host exposure to infectious agent
+def:"A process in which an infectious agent comes into physical contact
with a potential host of the infectious agent." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: span:ProcessualEntity ! processual_entity
+
+[Term]
+id: IDO:0000437
+name: adhesion disposition
+def:"A disposition borne by a biological macromolecule that is the
disposition to participate in adherence to host." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: snap:Disposition ! disposition
+
+[Term]
+id: snap:ObjectBoundary
+name: object_boundary
+def:"Definition: An independent continuant [snap:IndependentContinuant]
that is a lower dimensional part of a spatial entity\, normally a closed
two-dimensional surface. Boundaries are those privileged parts of object
[snap:Object] entities that exist at exactly the point where the object
[snap:Object] is separated off from the rest of the existing entities in
the world.; Examples: the surface of the skin\, the surface of the earth\,
the surface of the interior of the stomach\, the outer surface of a cell or
cell wall; Comment: Boundaries are theoretically difficult entities to
account for\, however the intuitive notion of a physical boundary as a
surface of some sort (whether inside or outside of a thing) will generally
serve as a good guide for the use of this universal.; Synonyms: substance
boundary" [OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: snap:IndependentContinuant ! independent_continuant
+
+[Term]
+id: IDO:0000212
+name: _obsolete_susceptibility
+def:"'can change depending on environmentnnwhere should susceptibility
factors go?'-ID[O]:0000212: can change depending on environmentnnwhere
should susceptibility factors go?" [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000009
+name: _obsolete_latency
+def:"'infection has occurred\, but it might not have manifested
itselfnquality of being in a non replicative statentime to manifest itself
na pathogen when it is in a non replicative state'-ID[O]:0000009: infection
has occurred\, but it might not have manifested itselfnquality of being in
a non replicative statentime to manifest itself na pathogen when it is in a
non replicative state" [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: snap:ZeroDimensionalRegion
+name: zero_dimensional_region
+def:"Examples: a point; Definition: A spatial region [snap:SpatialRegion]
with no dimensions." [OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: snap:SpatialRegion ! spatial_region
+
+[Term]
+id: IDO:0000554
+name: infectious agent portal of exit
+def:"An anatomical entity bearing the infectious agent portal of exit
role." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: CARO:0000000 ! anatomical entity
+
+[Term]
+id: IDO:0000640
+name: acquired immunodeficiency
+def:"An immunodeficiency that is not caused by a genetic predisposition."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000617 ! immunodeficiency
+
+[Term]
+id: IDO:0000016
+name: _obsolete_inactivated
+is_obsolete: true
+
+[Term]
+id: IDO:0000095
+name: _obsolete_pathogen-induced necrosis
+is_obsolete: true
+
+[Term]
+id: IDO:0000513
+name: infectious organism population
+def:"An organism population whose members each have an infectious
disposition." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000509 ! organism population
+
+[Term]
+id: IDO:0000089
+name: _obsolete_passage through cell membrane
+is_obsolete: true
+
+[Term]
+id: IDO:0000542
+name: biological vector of infectious agent
+def:"An infectious agent vector bearing the biological vector of
infectious agent role." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000540 ! infectious agent vector
+
+[Term]
+id: IDO:0000433
+name: antiseptic role
+def:"A role borne by a material entity in virtue of the fact that it has
an antimicrobial disposition and is applied to an anatomical entity of a
living organism. " [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: snap:Role ! role
+
+[Term]
+id: IDO:0000085
+name: _obsolete_penetration of host cell
+is_obsolete: true
+
+[Term]
+id: GO:0051234
+name: establishment of localization
+is_a: span:ProcessualEntity ! processual_entity
+
+[Term]
+id: IDO:0000552
+name: endotoxin
+def:"A biological macromolecule bearing the endotoxin role."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000549 ! toxin
+
+[Term]
+id: span:SpatiotemporalRegion
+name: spatiotemporal_region
+def:"Examples: the spatiotemporal region occupied by a human life\, the
spatiotemporal region occupied by the development of a cancer tumor\, the
spatiotemporal context occupied by a process of cellular meiosis; Comment:
All instances of occurrent [span:Occurrent] are spatiotemporal entities\,
that is\, they enter in the relation of (spatiotemporal) location with
spatiotemporal region [span:SpatiotemporalRegion] entities. As a particular
case\, the exact spatiotemporal location of a spatiotemporal region
[span:SpatiotemporalRegion] is this region itself.; Definition: An
occurrent [span:Occurrent] at or in which processual entity
[span:ProcessualEntity] entities can be located.; Comment: An instance of
the spatiotemporal region [span:SpatiotemporalRegion] is a part of
spacetime. All parts of spacetime are spatiotemporal region
[span:SpatiotemporalRegion] entities and only spatiotemporal region
[span:SpatiotemporalRegion] entities are parts of spacetime. In
particular\, neither spatial region [snap:SpatialRegion] entities nor
temporal region [span:TemporalRegion] entities are in BFO parts of
spacetime. Spacetime is the entire extent of the spatiotemporal universe\,
a designated individual\, which is thus itself a spatiotemporal region
[span:SpatiotemporalRegion]. Spacetime is among occurrents the analogous of
space among continuant [snap:Continuant] entities.; Comment: Spacetime and
spatiotemporal region [span:SpatiotemporalRegion] entities are entities in
their own rights which exist independently of any entities which can be
located at them. This view of spacetime can be called "absolutist" or "the
container view". In BFO\, the class processual context
[span:ProcessualContext] allows for a so-called relational view of
spacetime\, that is to say\, a view according to which spatiotemporality is
a matter of relative location between entities and not a matter of being
tied to spacetime. In BFO\, the bridge between these two views is secured
through the fact that instances of processual context
[span:ProcessualContext] are too spatiotemporal entities."
[OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: span:Occurrent ! occurrent
+
+[Term]
+id: IDO:0000558
+name: antimicrobial
+def:"A material entity with the antimicrobial disposition."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: snap:MaterialEntity ! material_entity
+
+[Term]
+id: IDO:0000544
+name: fomite
+def:"An material entity bearing the fomite role." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: snap:MaterialEntity ! material_entity
+
+[Term]
+id: IDO:0000114
+name: _obsolete_phase variation
+is_obsolete: true
+
+[Term]
+id: IDO:0000649
+name: amebiasis
+def:"An infection located in the colon and that has as part organisms of
the Species Entamoeba histolytica" [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000586 ! infection
+
+[Term]
+id: IDO:0000506
+name: bacteremia
+def:"An infection that has as part bacteria located in the blood."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000586 ! infection
+
+[Term]
+id: IDO:0000612
+name: pathologic immunosuppression
+def:"An immunosuppression process which arises as the result of a
disorder." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000610 ! immunosuppression
+
+[Term]
+id: OGMS:0000063
+name: disease course
+def:"The totality of all processes through which a given disease instance
is realized." [OBO:imported "http://purl.obolibrary.org/obo/ogms.owl"]
+is_a: span:ProcessualEntity ! processual_entity
+
+[Term]
+id: IDO:0000471
+name: complex infection
+def:"An infection comprised of infectious organisms from different
species." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000586 ! infection
+
+[Term]
+id: IDO:0000080
+name: _obsolete_penetration via injury of epithelial barrier
+is_obsolete: true
+
+[Term]
+id: IDO:0000406
+name: opportunistic infectious disposition
+def:"An infectious disposition to become clinically abnormal only in
organisms whose defenses are compromised." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000452 ! infectious disposition
+
+[Term]
+id: GO:0005575
+name: cellular component
+is_a: snap:MaterialEntity ! material_entity
+
+[Term]
+id: IDO:0000068
+name: _obsolete_emerging pathogen
+is_obsolete: true
+
+[Term]
+id: IDO:0000097
+name: _obsolete_pathogen spread through host
+is_obsolete: true
+
+[Term]
+id: IDO:0000598
+name: host living with infected household contact
+def:"A host exposure to environment with infectious agent where the
environment is a household that also has an infected host"
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000597 ! host exposure to environment with infectious agent
+
+[Term]
+id: IDO:0000220
+name: _obsolete_infectivity period
+is_obsolete: true
+
+[Term]
+id: IDO:0000059
+name: _obsolete_reservoir
+def:"'holding place for a potential pathogen...animate or
inanimate'-ID[O]:0000059: holding place for a potential pathogen...animate
or inanimate" [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000564
+name: viricide
+def:"An antiviral whose antiviral disposition is realized in a process of
killing viruses." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000559 ! antiviral
+
+[Term]
+id: IDO:0000515
+name: normal resident microbiota population
+def:"An organism population whose members are particpating in
non-parasitic symbiosis with a particular host." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000509 ! organism population
+
+[Term]
+id: IDO:0000087
+name: _obsolete_fusion with host cell membrane
+is_obsolete: true
+
+[Term]
+id: IDO:0000498
+name: active immunization against infectious agent
+def:"An immunization process that begins with exposure of an organism to
antigen and results in immunity against an infectious agent."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000497 ! immunization against infectious agent
+
+[Term]
+id: IDO:0000306
+name: _obsolete_fitness
+def:"'is a quality relating to both bacteria and host'-ID[O]:0000306: is a
quality relating to both bacteria and host" [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000636
+name: sepsis
+def:"A process that is a systemic inflammatory response to infection."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: span:ProcessualEntity ! processual_entity
+
+[Term]
+id: IDO:0000441
+name: antifungal disposition
+def:"An antimicrobial disposition to kill or inhibit the growth of fungal
organisms." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000439 ! antimicrobial disposition
+
+[Term]
+id: IDO:0000102
+name: _obsolete_epidemiological spread of disease
+is_obsolete: true
+
+[Term]
+id: IDO:0000206
+name: _obsolete_biotic
+is_obsolete: true
+
+[Term]
+id: IDO:0000508
+name: virion
+def:"A virus that is in its assembled state consisting of genomic material
(DNA or RNA) surrounded by coating molecules." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: NCBITaxon:10239 ! Viruses
+
+[Term]
+id: IDO:0000609
+name: colonization of human anterior nares
+def:"A colonization of human process in which the colonized site is the
perineum.; A colonization of human process in which the colonized site is
the anterior nares." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000650 ! colonization of human
+
+[Term]
+id: IDO:0000614
+name: _obsolete_replicating biological material entity
+def:"A biological material entity that is capable of replication."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000473
+name: intracellular infection
+def:"An infection for which the infectious agents that are part of the
infection persist inside host cells." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000586 ! infection
+
+[Term]
+id: IDO:0000104
+name: _obsolete_infection
+is_obsolete: true
+
+[Term]
+id: IDO:0000066
+name: _obsolete_infectious agent
+is_obsolete: true
+
+[Term]
+id: span:ConnectedSpatiotemporalRegion
+name: connected_spatiotemporal_region
+def:"Examples: the spatial and temporal location of an individual
organism's life\, the spatial and temporal location of the development of a
fetus; Definition: A spatiotemporal region [span:SpatiotemporalRegion] that
has temporal and spatial dimensions such that all points within the
spatiotemporal region are mediately or immediately connected to all other
points within the same spatiotemporal region [span:SpatiotemporalRegion]."
[OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: span:SpatiotemporalRegion ! spatiotemporal_region
+
+[Term]
+id: IDO:0000101
+name: _obsolete_emergence
+def:"'the process by which an infectious disease establishes itself in a
new population (or at a sufficiently higher rate? higher prevalence and/or
higher incidence)'-ID[O]:0000101: the process by which an infectious
disease establishes itself in a new population (or at a sufficiently higher
rate? higher prevalence and/or higher incidence)" [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000629
+name: host role
+def:"A role borne by an organism in virtue of the fact that it's extended
organism contains a material entity." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: snap:Role ! role
+
+[Term]
+id: snap:Object
+name: object
+def:"Synonyms: substance; Examples: an organism\, a heart\, a chair\, a
lung\, an apple; Definition: A material entity [snap:MaterialEntity] that
is spatially extended\, maximally self-connected and self-contained (the
parts of a substance are not separated from each other by spatial gaps) and
possesses an internal unity. The identity of substantial object
[snap:Object] entities is independent of that of other entities and can be
maintained through time." [OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: snap:MaterialEntity ! material_entity
+
+[Term]
+id: IDO:0000106
+name: _obsolete_immunization
+is_obsolete: true
+
+[Term]
+id: IDO:0000477
+name: acute infectious disease course
+def:"An infectious disease course that begins soon after infection is
established and progresses rapidly to severe stages." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000495 ! infectious disease course
+
+[Term]
+id: snap:ObjectAggregate
+name: object_aggregate
+def:"Synonyms: substance aggregate; Examples: a heap of stones\, a group
of commuters on the subway\, a collection of random bacteria\, a flock of
geese\, the patients in a hospital; Definition: A material entity
[snap:MaterialEntity] that is a mereological sum of separate object
[snap:Object] entities and possesses non-connected boundaries."
[OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: snap:MaterialEntity ! material_entity
+
+[Term]
+id: IDO:0000458
+name: contagiousness
+def:"A disposition that inheres in a host of infectious agent and is a
disposition to transmit infectious agents to organisms of the same species
through casual contact with a high likelihood of realization."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: snap:Disposition ! disposition
+
+[Term]
+id: IDO:0000642
+name: simple infection
+def:"An infection comprised of infectious organism all of the same
species." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000586 ! infection
+
+[Term]
+id: IDO:0000118
+name: _obsolete_pandemic spread of disease
+is_obsolete: true
+
+[Term]
+id: IDO:0000496
+name: long-term nonprogressing infectious disease course
+def:"A chronic infectious disease course that does not progress to severe
stages for a long period of time." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000590 ! chronic infectious disease course
+
+[Term]
+id: IDO:0000440
+name: antiviral disposition
+def:"An antimicrobial disposition to kill or inhibit the growth of
viruses." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000439 ! antimicrobial disposition
+
+[Term]
+id: IDO:0000022
+name: _obsolete_live
+is_obsolete: true
+
+[Term]
+id: IDO:0000610
+name: immunosuppression
+def:"A process that attenuates an immune response." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: span:ProcessualEntity ! processual_entity
+
+[Term]
+id: IDO:0000461
+name: co-infected host
+def:"An infected host that has two infections with different species of
infectious agents as part." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000460 ! infected host
+
+[Term]
+id: IDO:0000592
+name: immune population
+def:"An organism population whose members have acquired immunity to an
infectious agent." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000509 ! organism population
+
+[Term]
+id: IDO:0000419
+name: mechanical vector of infectious agent role
+def:"An infectious agent vector role borne by an organism in virtue of the
fact that the infectious agent does not multiply in or on the vector."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000418 ! infectious agent vector role
+
+[Term]
+id: IDO:0000081
+name: _obsolete_transcytosis
+is_obsolete: true
+
+[Term]
+id: IDO:0000037
+name: _obsolete_commensal
+is_obsolete: true
+
+[Term]
+id: IDO:0000208
+name: _obsolete_seroprevalence
+def:"'prevalence as measured by antibody'-ID[O]:0000208: prevalence as
measured by antibody" [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000490
+name: infectious disease endemicity
+def:"A quality that inheres in an organism population in virtue of the
fact that infections of the type that causes an infectious disease are
maintained in the population via intra-population transmission or by
transmission from a local reservoir." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: snap:Quality ! quality
+
+[Term]
+id: IDO:0000404
+name: infectious agent role
+def:"A role borne by an infectious agent when contained in a host in which
its infectious disposition can be realized." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000405 ! pathogen role
+
+[Term]
+id: IDO:0000225
+name: _obsolete_extrinsic incubation period
+is_obsolete: true
+
+[Term]
+id: snap:Role
+name: role
+def:"Examples: the role of a person as a surgeon\, the role of a chemical
compound in an experiment\, the role of a patient relative as defined by a
hospital administrative form\, the role of a woman as a legal mother in the
context of system of laws\, the role of a biological grandfather as legal
guardian in the context of a system of laws\, the role of ingested matter
in digestion\, the role of a student in a university; Definition: A
realizable entity [snap:RealizableEntity] the manifestation of which brings
about some result or end that is not essential to a continuant
[snap:Continuant] in virtue of the kind of thing that it is but that can be
served or participated in by that kind of continuant [snap:Continuant] in
some kinds of natural\, social or institutional contexts."
[OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: snap:RealizableEntity ! realizable_entity
+
+[Term]
+id: IDO:0000589
+name: immunodeficient host
+def:"A host that has an immunodeficiency." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000531 ! host
+
+[Term]
+id: IDO:0000590
+name: chronic infectious disease course
+def:"An infectious disease course that unfolds over a long period of
time." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000495 ! infectious disease course
+
+[Term]
+id: IDO:0000072
+name: _obsolete_disruption of body surface
+is_obsolete: true
+
+[Term]
+id: IDO:0000475
+name: local infection
+def:"An infection for which the infectious agents that are part of the
infection are limited to a relatively small area of the host's body."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000586 ! infection
+
+[Term]
+id: IDO:0000041
+name: _obsolete_route of entry
+is_obsolete: true
+
+[Term]
+id: IDO:0000566
+name: primary infection
+def:"An infection bearing the primary infection role." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000586 ! infection
+
+[Term]
+id: snap:IndependentContinuant
+name: independent_continuant
+def:"Synonyms: substantial entity; Examples: an organism\, a heart\, a
leg\, a person\, a symphony orchestra\, a chair\, the bottom right portion
of a human torso\, the lawn and atmosphere in front of our building;
Definition: A continuant [snap:Continuant] that is a bearer of quality
[snap:Quality] and realizable entity [snap:RealizableEntity] entities\, in
which other entities inhere and which itself cannot inhere in anything."
[OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: snap:Continuant ! continuant
+
+[Term]
+id: IDO:0000064
+name: _obsolete_pathogen
+is_obsolete: true
+
+[Term]
+id: GO:0005615
+name: extracellular space
+is_a: snap:MaterialEntity ! material_entity
+
+[Term]
+id: IDO:0000492
+name: infectious disease endemic rate
+def:"A quality that inheres in an organism population and is the
infectious disease incidence rate that is typical for an infectious disease
in that organism population. " [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000483 ! infectious disease incidence rate
+
+[Term]
+id: span:TemporalInstant
+name: temporal_instant
+def:"Examples: right now\, the moment at which a finger is detached in an
industrial accident\, the moment at which a child is born\, the moment of
death; Definition: A connected temporal region
[span:ConnectedTemporalRegion] comprising a single moment of time."
[OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: span:ConnectedTemporalRegion ! connected_temporal_region
+
+[Term]
+id: IDO:0000062
+name: _obsolete_pathogenicity island
+is_obsolete: true
+
+[Term]
+id: IDO:0000587
+name: host genetic resistance to infectious agent
+def:"A host resistance to infectious agent that inheres in an organism in
virtue of its genetic or epigenetic qualities." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000446 ! host resistance to infectious agent
+
+[Term]
+id: snap:FiatObjectPart
+name: fiat_object_part
+def:"Synonyms: fiat substance part; Examples: upper and lower lobes of the
left lung\, the dorsal and ventral surfaces of the body\, the east side of
Saarbruecken\, the lower right portion of a human torso; Definition: A
material entity [snap:MaterialEntity] that is part of an object
[snap:Object] but is not demarcated by any physical discontinuities."
[OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: snap:MaterialEntity ! material_entity
+
+[Term]
+id: IDO:0000018
+name: _obsolete_pandemic
+is_obsolete: true
+
+[Term]
+id: IDO:0000227
+name: _obsolete_dormancy period
+def:"'is a period a process?'-ID[O]:0000227: is a period a process?"
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000410
+name: intermediate host role
+def:"A symbiont host role borne by an organism in virtue of the fact that
its partner in symbiosis utilizes the host to undergo a developmental stage
transition\, and the host is required for continuation of the partner's
life cycle." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000408 ! symbiont host role
+
+[Term]
+id: IDO:0000008
+name: _obsolete_contagious
+is_obsolete: true
+
+[Term]
+id: IDO:0000200
+name: _obsolete_mode of transmission
+is_obsolete: true
+
+[Term]
+id: IDO:0000223
+name: _obsolete_host recovery period
+is_obsolete: true
+
+[Term]
+id: IDO:0000616
+name: infectious agent colony
+def:"A colony that is an infectious agent or a population of infectious
agents." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000615 ! colony
+
+[Term]
+id: IDO:0000569
+name: aymptomatic host of infectious agent
+def:"An infectious agent host who has no symptoms of the infectious
disease associated with the infectious agent." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000537 ! infectious agent host
+
+[Term]
+id: IDO:0000446
+name: host resistance to infectious agent
+def:"A protective resistance that inheres in an organism and mitigates the
damaging effects on that organism of an infectious agent."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000444 ! protective resistance
+
+[Term]
+id: IDO:0000604
+name: colonization of host
+def:"An establishment in host process in which an organism establishes
itself in a host." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000625 ! establishment in host
+
+[Term]
+id: IDO:0000463
+name: infectious agent transmissibility
+def:"A quality that inheres in an infectious agent and is the likelihood
that the infectious agent will undergo a horizontal transmission process."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: snap:Quality ! quality
+
+[Term]
+id: IDO:0000412
+name: dead-end host role
+def:"A symbiont host role borne by an organism in virtue of the fact that
its partner in symbiosis has the infectious disposition but cannot be
transmitted from the host to the partner's definitive host."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000408 ! symbiont host role
+
+[Term]
+id: IDO:0000074
+name: _obsolete_pathogen adherence to host cell
+def:"'create cross products for "host" and "pathogen" that will be part of
this process.'-ID[O]:0000074: create cross products for "host"
and "pathogen" that will be part of this process." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000006
+name: _obsolete_toxicity
+is_obsolete: true
+
+[Term]
+id: IDO:0000535
+name: dead-end host
+def:"A host bearing the dead-end host role." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000531 ! host
+
+[Term]
+id: IDO:0000625
+name: establishment in host
+def:"A process starting when a material entity is in a host and during
which it reaches a site in the host in which it can survive\, grow\,
multiply\, or mature." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: GO:0051234 ! establishment of localization
+
+[Term]
+id: IDO:0000010
+name: _obsolete_immunosuppressed
+is_obsolete: true
+
+[Term]
+id: IDO:0000560
+name: antifungal
+def:"An antimicrobial bearing the antifungal disposition."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000558 ! antimicrobial
+
+[Term]
+id: IDO:0000076
+name: _obsolete_specific adherence
+is_obsolete: true
+
+[Term]
+id: IDO:0000644
+name: pregnancy-induced immunosuppression
+def:"An immunosuppression induced by progesterone and other factors
upregulated in pregnant women." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000610 ! immunosuppression
+
+[Term]
+id: IDO:0000487
+name: infectious disease lifetime prevalence
+def:"A quality that inheres in an organism population and is the number of
organisms in the population who have\, at any point during their lives\,
been bearers of an infectious disease and experienced realization of the
disease." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: snap:Quality ! quality
+
+[Term]
+id: IDO:0000054
+name: _obsolete_colonization factor
+def:"'role played by portion of physical substance which promotes
colonization'-ID[O]:0000054: role played by portion of physical substance
which promotes colonization" [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000221
+name: _obsolete_infectious disease progression
+def:"'the unfolding or course of infectious diseasennwhat do we say about
infectious disease that always remain latent nwhat about when a pathogen
continues its progression nnwe need to think about whether we need a term
called stagenlife cycle?nprogression?ndevelopment?'-ID[O]:0000221: the
unfolding or course of infectious diseasennwhat do we say about infectious
disease that always remain latent nwhat about when a pathogen continues its
progression nnwe need to think about whether we need a term called
stagenlife cycle?nprogression?ndevelopment?" [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000531
+name: host
+def:"An organism bearing the host role." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: OBI:0100026 ! organism
+
+[Term]
+id: snap:Disposition
+name: disposition
+def:"Examples: the disposition of vegetables to decay when not
refrigerated\, the disposition of a vase to brake if dropped\, the
disposition of blood to coagulate\, the disposition of a patient with a
weakened immune system to contract disease\, the disposition of metal to
conduct electricity.; Definition: A realizable entity
[snap:RealizableEntity] that essentially causes a specific process or
transformation in the object [snap:Object] in which it inheres\, under
specific circumstances and in conjunction with the laws of nature. A
general formula for dispositions is: X (object [snap:Object] has the
disposition D to (transform\, initiate a process) R under conditions C."
[OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: snap:RealizableEntity ! realizable_entity
+
+[Term]
+id: IDO:0000002
+name: _obsolete_quality
+is_obsolete: true
+
+[Term]
+id: IDO:0000562
+name: antibiotic
+def:"An antimicrobial bearing the antibiotic disposition."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000558 ! antimicrobial
+
+[Term]
+id: BFO:Entity
+name: entity
+
+[Term]
+id: CHEBI:23367
+name: molecular entity
+is_a: snap:MaterialEntity ! material_entity
+
+[Term]
+id: IDO:0000231
+name: _obsolete_horizontal transmission
+is_obsolete: true
+
+[Term]
+id: IDO:0000023
+name: _obsolete_zoonotic
+is_obsolete: true
+
+[Term]
+id: IDO:0000046
+name: _obsolete_sign
+is_obsolete: true
+
+[Term]
+id: IDO:0000570
+name: subclinical infection
+def:"An infection that is part of an asymptomatic host." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000586 ! infection
+
+[Term]
+id: IDO:0000427
+name: exotoxin disposition
+def:"A toxin disposition to damage cells or extracellular matrix by a
direct enzymatic process." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000426 ! toxin disposition
+
+[Term]
+id: IDO:0000004
+name: _obsolete_virulence
+def:"'the degree of pathogenicitynnpathogenicity and virulence are used in
some communities as synonyms.'-ID[O]:0000004: the degree of
pathogenicitynnpathogenicity and virulence are used in some communities as
synonyms." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_obsolete: true
+
+[Term]
+id: IDO:0000483
+name: infectious disease incidence rate
+def:"A quality that inheres in an organism population and is the
infectious disease incidence proportion divided by the period of time over
which the incidence was measured." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: snap:Quality ! quality
+
+[Term]
+id: IDO:0000539
+name: infectious agent carrier
+def:"An infectious agent host bearing the infectious agent carrier role."
[OBO:sourced "IDO consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000537 ! infectious agent host
+
+[Term]
+id: IDO:0000527
+name: infectious organism
+def:"An infectious agent that is an organism." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000596 ! infectious agent
+
+[Term]
+id: IDO:0000572
+name: chronic carrier of infectious agent
+def:"An infectious agent carrier who has been bearer of the infectious
agent carrier role for an extended period of time." [OBO:sourced "IDO
consortium http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000539 ! infectious agent carrier
+
+[Term]
+id: IDO:0000444
+name: protective resistance
+def:"A disposition that inheres in a material entity in virtue of the fact
that the entity has a part (e.g. a gene product)\, which itself has a
disposition to mitigate damage to the entity." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: snap:Disposition ! disposition
+
+[Term]
+id: IDO:0000602
+name: host exposure to substance that might have infectious agent
+def:"A host exposure to environment with infectious agent where the
environment contains a material entity that has been assessed to confer a
risk of infection." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000597 ! host exposure to environment with infectious agent
+
+[Term]
+id: IDO:0000646
+name: trichomoniasis
+def:"An infection that has as part organisms of the Species Trichomonas
vaginalis." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000586 ! infection
+
+[Term]
+id: IDO:0000523
+name: obligatory symbiont
+def:"An organism that can only reach developmental maturity\, replicate\,
or persist in symbiosis." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: OBI:0100026 ! organism
+
+[Term]
+id: span:ProcessAggregate
+name: process_aggregate
+def:"Examples: the beating of the hearts of each of seven individuals in
the room\, the playing of each of the members of an orchestra\, a process
of digestion and a process of thinking taken together; Definition: A
processual entity [span:ProcessualEntity] that is a mereological sum of
process [span:Process] entities and possesses non-connected boundaries."
[OBO:imported "http://www.ifomis.org/bfo/1.1/"]
+is_a: span:ProcessualEntity ! processual_entity
+
+[Term]
+id: IDO:0000639
+name: infectious human pathogen
+def:"An infectious agent with a capability to infect human hosts.; An
immunodeficiency that exists in an organism because of a genetic
predisposition." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: IDO:0000596 ! infectious agent
+is_a: IDO:0000617 ! immunodeficiency
+
+[Term]
+id: IDO:0000489
+name: infectious disease mortality rate
+def:"A quality that inheres in an organism population and is the
proportion of deaths in the population resulting from an infectious disease
over a specified period of time." [OBO:sourced "IDO consortium
http://www.infectiousdiseaseontology.org"]
+is_a: snap:Quality ! quality
+
+[Term]
+id: IDO:0000033
+name: _obsolete_morbidity
+is_obsolete: true
+
+[Term]
+id: IDO:0000056
+name: _obsolete_host
+is_obsolete: true
+
+[Term]
+id: IDO:0000215
+name: _obsolete_quality of host population
+is_obsolete: true
+
+[Term]
+id: IDO:0000633
+name: metatstatic infection
***The diff for this file has been truncated for email.***
=======================================
--- /dev/null
+++ /releases/2014-08-01/ido.owl Fri Aug 1 17:28:40 2014 UTC
@@ -0,0 +1,10 @@
+<?xml version="1.0"?>
+<rdf:RDF
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+
+<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ido/ido.owl">
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/ido-main.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/ido-obsolete.owl"/>
+</owl:Ontology>
+</rdf:RDF>

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