[infectious-disease-ontology] r358 committed - Partial fix to PURLs. externals are now fixed and ido-external-derived...

[infectious-di...@googlecode.com]

Revision: 358
Author: alanruttenberg
Date: Fri Nov 15 06:37:40 2013 UTC
Log: Partial fix to PURLs. externals are now fixed and
ido-external-derived.owl regenerated. Still need to fix BFO and relation ids
http://code.google.com/p/infectious-disease-ontology/source/detail?r=358

Added:
/trunk/src/ontology/ido-core/tool
/trunk/src/ontology/ido-core/tool/commands.lisp
/trunk/src/ontology/ido-core/tool/lsw.jar
/trunk/src/ontology/ido-core/tool/owltool.jar
Modified:
/trunk/src/ontology/ido-core/external-templates.txt
/trunk/src/ontology/ido-core/ido-base.owl
/trunk/src/ontology/ido-core/ido-external-by-hand.owl
/trunk/src/ontology/ido-core/ido-external-derived.owl
/trunk/src/ontology/ido-core/ido-external.owl
/trunk/src/ontology/ido-core/ido-main.owl

=======================================
--- /dev/null
+++ /trunk/src/ontology/ido-core/tool/commands.lisp Fri Nov 15 06:37:40
2013 UTC
@@ -0,0 +1,230 @@
+;; (defparameter *obi-prefixes*
+;; '(("xsd" "http://www.w3.org/2001/XMLSchema#")
+;; ("rdf" "http://www.w3.org/1999/02/22-rdf-syntax-ns#")
+;; ("rdfs" "http://www.w3.org/2000/01/rdf-schema#")
+;; ("owl" "http://www.w3.org/2002/07/owl#")
+;; ("daml" "http://www.daml.org/2001/03/daml+oil#")
+;; ("dcterms" "http://purl.org/dc/terms/")
+;; ("dc" "http://purl.org/dc/elements/1.1/")
+;; ("protege" "http://protege.stanford.edu/plugins/owl/protege#")
+;;
("protege-dc" "http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl#")
+;; ("oboInOwl" "http://www.geneontology.org/formats/oboInOwl#")
+;; ("bfo" "http://www.ifomis.org/bfo/1.1#")
+;; ("robfo" "http://purl.org/obo/owl/ro_bfo_bridge/1.1#")
+;; ("snap" "http://www.ifomis.org/bfo/1.1/snap#")
+;; ("span" "http://www.ifomis.org/bfo/1.1/span#")
+;; ("ro" "http://www.obofoundry.org/ro/ro.owl#")
+;; ("rotoo" "http://purl.org/obo/owl/ro#")
+;; ("pato" "http://purl.org/obo/owl/PATO#")
+;; ("cell" "http://purl.org/obo/owl/CL#")
+;; ("chebi" "http://purl.org/obo/owl/CHEBI#")
+;; ("envo""http://purl.org/obo/owl/ENVO#")
+;; ("ncbitax""http://purl.org/obo/owl/NCBITaxon#")
+;; ("obi" "http://purl.obolibrary.org/obo/")
+;; ("caro" "http://purl.org/obo/owl/CARO#")
+;; ("pro" "http://purl.org/obo/owl/PRO#")
+;; ("so" "http://purl.org/obo/owl/SO#")
+;; ("go" "http://purl.org/obo/owl/GO#")
+;;
("obi_denrie" "http://purl.obolibrary.org/obo/obi/DigitalEntityPlus.owl#")
+;; ("obi_biomat" "http://purl.obolibrary.org/obo/obi/Biomaterial.owl#")
+;;
("obi_extd" "http://purl.obolibrary.org/obo/obi/externalDerived.owl#")
+;; ("obi_rel" "http://purl.obolibrary.org/obo/obi/Relations.owl#")
+;;
("obi_plan" "http://purl.obolibrary.org/obo/obi/PlanAndPlannedProcess.owl#")
+;; ("obi_role" "http://purl.obolibrary.org/obo/obi/Role.owl#")
+;;
("obi_instr" "http://purl.obolibrary.org/obo/obi/InstrumentAndPart.owl#")
+;; ("obi_func" "http://purl.obolibrary.org/obo/obi/OBI-Function.owl#")
+;;
("obi_annot" "http://purl.obolibrary.org/obo/obi/AnnotationProperty.owl#")
+;; ("obi_ext" "http://purl.obolibrary.org/obo/obi/external.owl#")
+;; ("obi_quality" "http://purl.obolibrary.org/obo/obi/Quality.owl#")
+;;
("obi_owlfull" "http://purl.obolibrary.org/obo/obi/obi-owl-full.owl#")))
+;; (print "I'm here")
+;; (setq *sparql-always-trace* t)
+;; (trace get-url)
+;; (defun sparql (query &rest all &key (kb (and (boundp '*default-kb*)
*default-kb*)) (use-reasoner *default-reasoner*) (flatten nil) (trace nil)
(trace-show-query t) endpoint-options geturl-options (values t) (endpoint
nil) (chunk-size nil) (syntax :sparql) &allow-other-keys &aux
(command :select) count)
+;; (when chunk-size (return-from sparql (apply 'sparql-by-chunk query
all)))
+;; (setq use-reasoner (or endpoint use-reasoner))
+;; (setq count (and (consp query)
+;; (eq (car query) :select)
+;; (getf (third query) :count)
+;; (member use-reasoner '(:jena :none :pellet :sparqldl))))
+;; (when (typep kb 'owl-ontology)
+;; (setq kb (kb kb)))
+;; (when (listp query)
+;; (setq command (car query))
+;; (setq query (sparql-stringify query use-reasoner)))
+;; (setq use-reasoner (or (second (assoc use-reasoner
*endpoint-abbreviations*)) use-reasoner))
+;; (if (stringp use-reasoner) (setq use-reasoner (make-uri
use-reasoner)))
+;; (let ((do-trace (or *sparql-always-trace* (and trace
*sparql-allow-trace*))))
+;; (if (and do-trace trace-show-query)
+;; (format t "Query: ~a~%~a~%Results:~%" (or trace "Tracing all")
query)
+;; (if do-trace
+;; (format t "Query: ~a~%Results:~%" (or trace "Tracing all"))))
+;; (if (uri-p use-reasoner)
+;; (let ((bindings (sparql-endpoint-query use-reasoner
query :query-options endpoint-options :geturl-options
geturl-options :command command)))
+;; (when do-trace
+;; (loop for one in bindings
+;; do (format t "~{~s~^ ~}~%" one))
+;; (terpri t))
+;; (if flatten (loop for b in bindings append b) (if values bindings
(values))))
+
+;; (let* ( ;; Query query = QueryFactory.create(queryString);
+;; (jquery (#"create" 'QueryFactory query (if (eq syntax :terp)
+;; (#"getInstance" 'TerpSyntax)
+;; (#"lookup" 'Syntax "SPARQL"))))
+
+
+;; ;; Execute the query and obtain results
+;; ;; QueryExecution qe = QueryExecutionFactory.create(query,
model);
+;; (qe (cond ((or (member use-reasoner '(:sparqldl :pellet t)))
+;; (unless (v3kb-pellet-jena-model kb)
+;; (instantiate-reasoner kb :pellet-sparql nil)
+;; (unless (v3kb-pellet-jena-model kb)
+;; (setf (v3kb-pellet-jena-model kb)
+;; (let ((graph (new 'org.mindswap.pellet.jena.PelletReasoner)))
+;; (#"createInfModel" 'com.hp.hpl.jena.rdf.model.ModelFactory
+;; (#"bind" graph (#"getKB" (v3kb-reasoner kb))))))))
+;; (#"prepare" (v3kb-pellet-jena-model kb))
+;; (#"create" 'SparqlDLExecutionFactory jquery
(v3kb-pellet-jena-model kb)))
+;; ((or (eq use-reasoner :none) (eq use-reasoner nil))
+;; (#"create" 'QueryExecutionFactory jquery
+;; (if (java-object-p kb) kb (jena-model kb))))
+;; ((or (eq use-reasoner :jena))
+;; (unless (v3kb-pellet-jena-model kb) (instantiate-reasoner
kb :pellet-sparql nil))
+;; (#"create" 'QueryExecutionFactory jquery (v3kb-pellet-jena-model
kb)))
+;; ((eq use-reasoner :owl) (error "Not supported yet")
+;; (#"create" 'QueryExecutionFactory jquery
+;; (#"createInfModel" 'modelfactory
+;; (#"getOWLReasoner" 'ReasonerRegistry)
+;; (#"getModel" (kb-jena-reasoner kb)))))))
+;; (print-db qe)
+;; ;; ResultSet results = qe.execSelect();
+;; (vars (set-to-list (#"getResultVars" jquery))))
+;; (unwind-protect
+;; (with-constant-signature ((getv "get") (next "next")
(has-next "hasNext") (get-uri "getURI"))
+;; (flet ((get-vars (bindingset)
+;; (let ((bindings
+;; (loop for var in vars
+;; for jval = (getv bindingset var)
+;; for val = (if (null jval)
+;; nil
+;; (if
+;; (#"isResource" jval)
+;; (make-uri (or (get-uri jval)
+;; (format nil "~a~a" *blankprefix* (#"toString" jval))
+;; ))
+;; (#"getValue" jval)))
+;; collect val)))
+;; (when do-trace
+;; (format t "~{~s~^ ~}~%" bindings))
+;; bindings)))
+;; ; (when (and (eq use-reasoner :pellet) query-uses-blank-nodes)
+;; ;
(set-java-field 'PelletOptions "TREAT_ALL_VARS_DISTINGUISHED" nil))
+;; ;; (if (member use-reasoner '(:pellet :jena))
+;; ;; (when (kb-kb kb)
+;; ;; (#"realize" (kb-kb kb))))
+;; ; work around pellet bug
+;; (let ((results (if (eq use-reasoner :pellet)
+;; (#"execSelect" qe) ; (#"execQuery" (v3kb-jena-reasoner kb)
jquery)
+
+;; (#"execSelect" qe))))
+
+;; (if count (return-from sparql (loop while (has-next results) do
(next results) sum 1)))
+;; (if values
+;; (if flatten
+;; (loop while (has-next results)
+;; append
+;; (get-vars (next results)))
+;; (loop while (has-next results)
+;; collect
+;; (get-vars (next results))))
+;; (loop while (has-next results)
+;; do (get-vars (next results)) finally (return (values))
+;; )
+;; ))))
+
+;; ;; Important - free up resources used running the query
+;; ;; qe.close();
+;; (#"close" qe)
+;; (if do-trace (terpri))
+;; )))))
+
+;; (defun create-external-derived (&key
+;; (kb (load-kb-jena "obi:branches;external.owl"))
+;; (templates-path "obi:lisp;external-templates.txt")
+;; (output-path (merge-pathnames
+;; "externalDerived.owl"
+;; (truename "obi:branches;")))
+
+;; (endpoint nil)
+;; (debug t)
+;;
(ontology-uri "http://purl.obolibrary.org/obo/obi/externalDerived.owl"))
+;; (let ((*sparql-always-trace* (or *sparql-always-trace* debug)))
+;; (declare (special *sparql-always-trace*))
+;; (let ((terms
+;; (sparql '(:select (?term ?where ?parent) ()
+;; ;(?term !rdf:type !owl:Class)
+;; (?term !obi:IAO_0000412 ?where)
+;; (:union ((?term !rdfs:subClassOf ?parent))
((?term !rdf:type ?parent) (:filter (not (equal ?parent !owl:Class)))))
+;; )
+;; :use-reasoner :none ;; turn the reasoner off, so that we don't get
the obi superclasses
+;; :kb kb :trace t))
+;; (classes
+;; (sparql '(:select (?term) ()
+;; (?term !rdf:type !owl:Class))
+;; :use-reasoner :none ;; turn the reasoner off, so that we don't get
the obi superclasses
+;; :kb kb :trace t))
+;; (instances
+;; (sparql '(:select (?term ?type) ()
+;; (?term !rdf:type ?type)
+;; (:filter (and (not (regex
(str ?type) "^http://www.w3.org/2002/07/owl#")))))
+;; :use-reasoner :none ;; turn the reasoner off, so that we don't get
the obi superclasses
+;; :kb kb :trace t)))
+;; (format t "There are ~a external terms - ~a classes and ~a
instances~%" (length terms) (- (length terms) (length instances)) (length
instances))
+;; (multiple-value-bind (params templates) (parse-templates
templates-path)
+;; (let ((endpoint (or (second (assoc "default endpoint"
params :test 'equal)) endpoint))
+;; (graph_base (second (assoc "default graph_base"
params :test 'equal))))
+;; (assert endpoint () "What endpoint should I use?")
+;; (format t "Using endpoint: ~a~%" endpoint)
+;; (let ((rdfs
+;; (append
+;; (loop for query in (cadr (assoc "Once Only"
templates :test 'equalp))
+;; collect (get-url endpoint :post `(("query" ,query)) :persist
nil :dont-cache t :force-refetch t))
+;; (loop for (term where) in terms
+;; for graph = (#"replaceAll" (uri-full
where) ".*[/#](.*?)(\.owl){0,1}" "$1")
+;; do (print-db term where graph)
+;; ;; when debug do (print-db graph)
+;; append
+;; (loop for (ont-pattern queries) in templates
+;; for matches = (#"matches" (uri-full where) (format nil "(?i)~a"
ont-pattern))
+;; for whichma = (progn (print-db (uri-full where) (format
nil "(?i)~a" ont-pattern) matches) nil)
+;; when matches
+;; append
+;; (loop for query in queries
+;; for filled-query =
+;; (#"replaceAll" (#"replaceAll" query "_ID_GOES_HERE_" (format
nil "<~a>" (uri-full term))) "_GRAPH_GOES_HERE_" (format nil "<~a~a>"
graph_base (#"replaceAll" (string-upcase graph) ".OWL$" "")))
+;; do (when debug
+;; (progn
+;; (print-db (uri-full term))
+;; (print-db filled-query)
+;; (print (get-url endpoint :post
`(("query" ,filled-query)) :persist nil :dont-cache t :force-refetch t))))
+
+;; ;; FIXME - Horrible workaround to compensate for abcl not
understanding unicode and VO using smart quotes
+;; ;; Explain to me why the get URL produces different strings on a
mac compared to a linux box. Byte order?
+;; collect (xml-encode-unicode-high (setq foo (#"replaceAll"
(#"replaceAll" (setq bar (get-url endpoint :post
`(("query" ,filled-query)) :persist nil :dont-cache t :force-refetch t))
*smart-leftquote-pattern* "&#8216;")
*smart-rightquote-pattern* "&#8217;")))))))))
+;; (let ((basic-info
+;; (with-output-to-string (s)
+;; (write-string "<?xml version=\"1.0\" encoding=\"utf-8\" ?>" s)
(terpri s)
+;; (write-string "<rdf:RDF
xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\"
xmlns:rdfs=\"http://www.w3.org/2000/01/rdf-schema#\">" s) (terpri s)
+;; (loop for (class) in (intersection classes terms)
+;; do (format s "<owl:Class rdf:about=~s></owl:Class>~%"
+;; (uri-full class) ))
+;; (loop for (instance type) in (intersection instances terms)
+;; do (format s "<rdf:Description rdf:about=~s><rdf:type
rdf:resource=~s/></rdf:Description>~%"
+;; (uri-full instance) (uri-full type) )
+;; )
+;; (write-string "</rdf:RDF>" s)
+;; )))
+;; (combine-template-query-results (cons basic-info rdfs)
output-path ontology-uri))
+;; (clean-rdf (namestring (truename output-path)) *obi-prefixes*
ontology-uri)
+;; nil
+;; ))))))
=======================================
--- /dev/null
+++ /trunk/src/ontology/ido-core/tool/lsw.jar Fri Nov 15 06:37:40 2013 UTC
File is too large to display a diff.
=======================================
--- /dev/null
+++ /trunk/src/ontology/ido-core/tool/owltool.jar Fri Nov 15 06:37:40 2013
UTC
File is too large to display a diff.
=======================================
--- /trunk/src/ontology/ido-core/external-templates.txt Mon Nov 8 02:00:28
2010 UTC
+++ /trunk/src/ontology/ido-core/external-templates.txt Fri Nov 15 06:37:40
2013 UTC
@@ -1,12 +1,12 @@
-default endpoint:http://sparql.obo.neurocommons.org/sparql/
-default graph_base:http://purl.org/science/graph/obo/
+default endpoint:http://beta.neurocommons.org/sparql/
+default graph_base:http://purl.org/science/graph/obo2/
# define the prefixes that will be added to all queries

prefix:rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix:owl: <http://www.w3.org/2002/07/owl#>
prefix:obi: <http://purl.obolibrary.org/obo/>
-prefix:tax: <http://purl.org/obo/owl/NCBITaxon#NCBITaxon>
-prefix:obo: <http://www.geneontology.org/formats/oboInOwl#>
+prefix:tax: <http://purl.obolibrary.org/obo/NCBITaxon>
+
prefix:iao: <http://purl.obolibrary.org/obo/>

# give names to our annotation properties
@@ -36,13 +36,13 @@
}

# Get the taxon term and superclasses up to the 4 we include in OBI, and
labels for them
-== http://purl.org/obo/owl/NCBITaxon ==
+== http://purl.obolibrary.org/obo/NCBITaxon.* ==
construct
{ ?super rdf:type owl:Class.
?super rdfs:subClassOf ?parent.
?super alias:preferredTerm ?label.
?super rdfs:label ?label.
- ?super alias:importedFrom <http://purl.org/obo/owl/NCBITaxon>
+ ?super alias:importedFrom <http://purl.obolibrary.org/obo/ncbitaxon.owl>
}
where
{
@@ -50,14 +50,14 @@
# part 1
{ # We harvest the transitive superclass annotations
_ID_GOES_HERE_ rdfs:subClassOf ?super.
- graph <http://purl.org/science/graph/obo/NCBITaxon>
+ graph <http://purl.org/science/graph/obo2/NCBITaxon>
{ ?super rdfs:subClassOf ?parent.
?super rdfs:label ?label.
}
}
UNION

- { graph <http://purl.org/science/graph/obo/NCBITaxon>
+ { graph <http://purl.org/science/graph/obo2/NCBITaxon>
{ ?super rdfs:subClassOf ?parent.
?super rdfs:label ?label.
FILTER (?super=_ID_GOES_HERE_)
@@ -68,7 +68,7 @@
(?parent = tax:_131567)))
}
# get the label and definition for your basic OBO term.
-== http://purl.org/obo/owl/.* ==
+== http://purl.obolibrary.org/obo/.* ==
construct
{
_ID_GOES_HERE_ alias:preferredTerm ?label.
@@ -80,8 +80,8 @@
{
{ _ID_GOES_HERE_ rdfs:label ?label. }
UNION
- { _ID_GOES_HERE_ obo:hasDefinition ?blank.
- ?blank rdfs:label ?definition}
+ { _ID_GOES_HERE_ alias:definition ?definition.
+ }
}

# get the label and definition for BIRN terms
=======================================
--- /trunk/src/ontology/ido-core/ido-base.owl Sat Mar 9 19:55:21 2013 UTC
+++ /trunk/src/ontology/ido-core/ido-base.owl Fri Nov 15 06:37:40 2013 UTC
@@ -4,19 +4,19 @@
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
- xmlns:CARO="http://purl.org/obo/owl/CARO#"
+ xmlns:CARO="http://purl.obolibrary.org/obo/"
xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
- xmlns:NCBITaxon="http://purl.org/obo/owl/NCBITaxon#"
+ xmlns:NCBITaxon="http://purl.obolibrary.org/obo/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
- xmlns:GO="http://purl.org/obo/owl/GO#"
+ xmlns:GO="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
+ xmlns:CHEBI="http://purl.obolibrary.org/obo/"
xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
- xmlns:TRANS="http://purl.org/obo/owl/TRANS#"
+ xmlns:TRANS="http://purl.obolibrary.org/obo/"
xmlns:span="http://www.ifomis.org/bfo/1.1/span#">
<owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/ido-base.owl">
<dc:date
rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2010-05-19</dc:date>
@@ -1573,7 +1573,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000508">
<rdfs:label xml:lang="en">virion</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_10239"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -1983,7 +1983,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000547">
<rdfs:label xml:lang="en">virulence factor</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A biological macromolecule produced
by a pathogen and that has a virulence factor disposition.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -1996,7 +1996,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000548">
<rdfs:label xml:lang="en">invasion factor</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A biological macromolecule that has
an invasion disposition.</obo:IAO_0000115>
@@ -2010,7 +2010,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000549">
<rdfs:label xml:lang="en">toxin</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -2023,7 +2023,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000550">
<rdfs:label xml:lang="en">exotoxin</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A molecular entity bearing an
exotoxin disposition.</obo:IAO_0000115>
@@ -2036,7 +2036,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000551">
<rdfs:label xml:lang="en">enterotoxin</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -2049,7 +2049,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000552">
<rdfs:label xml:lang="en">endotoxin</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<obo:IAO_0000115 xml:lang="en">A molecular entity with a toxin
disposition and that is a structural component of a pathogen and is
released from the pathogen only upon cytolysis.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -2062,7 +2062,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000553">
<rdfs:label xml:lang="en">infectious agent portal of
entry</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">An anatomical entity bearing an
infectious agent portal of entry role.</obo:IAO_0000115>
@@ -2075,7 +2075,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000554">
<rdfs:label xml:lang="en">infectious agent portal of
exit</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -2114,7 +2114,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000557">
<rdfs:label xml:lang="en">adhesion factor</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A biological macromolecule that has
an adhesion disposition.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -2438,7 +2438,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000584">
<rdfs:label xml:lang="en">cytotoxin</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A molecular entity with a toxin
disposition, the realization of which damages host cells.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -2891,7 +2891,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000625">
<rdfs:label xml:lang="en">establishment of localization in
host</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0051234"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0051234"/>
<obo:IAO_0000116>Requested addition of this term to the
GO.</obo:IAO_0000116>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -2986,7 +2986,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000632">
<rdfs:label xml:lang="en">neurotoxin</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -3277,7 +3277,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000656">
<rdfs:label>horizontal pathogen transmission process</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000000"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115>A pathogen transmission process in which a
pathogen is transmitted from one host to another of the same Species, and
the two hosts are not in a parent-child relationship.</obo:IAO_0000115>
</owl:Class>
@@ -3323,7 +3323,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000662">
<rdfs:label>life-sustaining process</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alex Diehl</obo:IAO_0000117>
<obo:IAO_0000115>A process which is necessary for the survival of
an organism.</obo:IAO_0000115>
@@ -3335,7 +3335,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000663">
<rdfs:label>negative regulation of life-sustaining
process</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0065007"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0065007"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alex Diehl</obo:IAO_0000117>
<obo:IAO_0000115>Any process that stops, prevents, or reduces the
frequency, rate or extent of a life-sustaining process.</obo:IAO_0000115>
@@ -3393,10 +3393,10 @@
<owl:equivalentClass>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2157"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2759"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10239"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
</owl:unionOf>
</owl:Class>
</owl:equivalentClass>
@@ -3424,73 +3424,73 @@



- <!-- http://purl.org/obo/owl/CARO#CARO_0000000 -->
+ <!-- http://purl.obolibrary.org/obo/CARO_0000000 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0000000"/>



- <!-- http://purl.org/obo/owl/CHEBI#CHEBI_23367 -->
+ <!-- http://purl.obolibrary.org/obo/CHEBI_23367 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367"/>



- <!-- http://purl.org/obo/owl/GO#GO_0008150 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0008150 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150"/>



- <!-- http://purl.org/obo/owl/GO#GO_0051234 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0051234 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051234">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051234">
<rdfs:label>establishment of localization</rdfs:label>
- <obo:IAO_0000412>Gene Ontology:
http://purl.org/obo/owl/GO</obo:IAO_0000412>
+ <obo:IAO_0000412>Gene Ontology:
http://purl.obolibrary.org/obo/go.owl</obo:IAO_0000412>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0065007 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0065007 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065007"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0065007"/>



- <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239 -->
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_10239 -->

- <owl:Class
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10239">
<rdfs:label>Viruses</rdfs:label>
</owl:Class>



- <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2 -->
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_2 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2"/>



- <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2157 -->
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_2157 -->

- <owl:Class
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2157">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2157">
<rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2759 -->
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_2759 -->

- <owl:Class
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2759"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>



- <!-- http://purl.org/obo/owl/TRANS#TRANS_0000000 -->
+ <!-- http://purl.obolibrary.org/obo/TRANS_0000000 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/TRANS#TRANS_0000000">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000000">
<rdfs:label>transmission process</rdfs:label>
<obo:IAO_0000116>Suggested definition: A process by which a
pathogen passes from one host organism to a second host organism of the
same Species.</obo:IAO_0000116>
- <obo:IAO_0000412>Transmission Ontology:
http://purl.org/obo/owl/TRANS</obo:IAO_0000412>
+ <obo:IAO_0000412>Transmission Ontology:
http://purl.obolibrary.org/obo/trans.owl</obo:IAO_0000412>
<obo:IAO_0000116>Suggested label: pathogen transmission
process</obo:IAO_0000116>
</owl:Class>

@@ -3552,7 +3552,7 @@

///////////////////////////////////////////////////////////////////////////////////////
-->

- <rdf:Description
rdf:about="http://purl.org/obo/owl/TRANS#TRANS_0000002">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/TRANS_0000002">
<obo:IAO_0000116>Suggested label: indirect pathogen transmission
process</obo:IAO_0000116>
</rdf:Description>
</rdf:RDF>
=======================================
--- /trunk/src/ontology/ido-core/ido-external-by-hand.owl Sat Dec 4
03:39:48 2010 UTC
+++ /trunk/src/ontology/ido-core/ido-external-by-hand.owl Fri Nov 15
06:37:40 2013 UTC
@@ -331,7 +331,7 @@
<oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
<oboInOwl:hasAlternativeId>OBO_REL:0000031</oboInOwl:hasAlternativeId>
</owl:ObjectProperty>
- <owl:Class rdf:about="http://purl.org/obo/owl/UBERON#UBERON_0000178">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000178">
<rdfs:label xml:lang="en">blood</rdfs:label>
</owl:Class>

=======================================
--- /trunk/src/ontology/ido-core/ido-external-derived.owl Thu Sep 1
22:46:33 2011 UTC
+++ /trunk/src/ontology/ido-core/ido-external-derived.owl Fri Nov 15
06:37:40 2013 UTC
@@ -28,233 +28,347 @@
xmlns:span="http://www.ifomis.org/bfo/1.1/span#"
xml:base="http://purl.obolibrary.org/obo/ido/ido-external-derived.owl">
<owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/ido-external-derived.owl"/>
- <owl:Class rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2157">
- <rdfs:label xml:lang="en">Archaea</rdfs:label>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0045087">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Innate immune responses are defense responses mediated by germline
encoded components that directly recognize components of potential
pathogens.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >innate immune response</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >innate immune response</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000020">
+ <obi:IAO_0000111>symptom</obi:IAO_0000111>
+ <rdfs:label>symptom</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">A quality of a patient that is observed
by the patient or a processual entity experienced by the patient, either of
which is hypothesized by the patient to be a realization of a
disease.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process specifically pertinent to the functioning of integrated
living units: cells, tissues, organs, and organisms. A process is a
collection of molecular events with a defined beginning and
end.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >biological_process</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >biological_process</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085031">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An interaction between two organisms living together in more or less
intimate association in a relationship in which one benefits and the other
is unaffected.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >commensalism</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >commensalism</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2759">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Eukaryota</rdfs:label>
+ <rdfs:label xml:lang="en">Eukaryota</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000087">
+ <obi:IAO_0000115 xml:lang="en">An object aggregate consisting of an
organism and all material entities located within the organism, overlapping
the organism, or occupying sites formed in part by the
organism.</obi:IAO_0000115>
+ <obi:IAO_0000111>extended organism</obi:IAO_0000111>
+ <rdfs:label>extended organism</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0043093">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >cytokinesis by binary fission</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A cytokinesis process that involves a set of conserved proteins
including FtsZ, and results in the formation of two similarly sized and
shaped cells; the process in which prokaryotic cells
divide.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >cytokinesis by binary fission</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000000">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >transmission process</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A process that is the means during which the pathogen is transmitted
directly or indirectly from its natural reservoir, a susceptible host or
source to a new host.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >transmission process</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0016265">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A permanent cessation of all vital functions: the end of life; can be
applied to a whole organism or to a part of an organism.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >death</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >death</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051234">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >establishment of localization</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >The directed movement of a cell, substance or cellular entity, such
as a protein complex or organelle, to a specific location.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >establishment of localization</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0065007">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >biological regulation</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >biological regulation</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process that modulates a measurable attribute of any biological
process, quality or function.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000002">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >indirect</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Indirect transmission is a transmission process during which the
pathogen is indirectly transferred from a reservoir, source or host to
another host by intermediary vehicles, vectors or as airborne dust
particles.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >indirect</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006959">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >humoral immune response</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An immune response mediated through a body fluid.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >humoral immune response</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006955">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any immune system process that functions in the calibrated response
of an organism to a potential internal or invasive threat.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >immune response</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >immune response</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000045">
- <obi:IAO_0000115 xml:lang="en">A material entity which is clinically
abnormal and part of an extended organism. Disorders are the physical basis
of disease.</obi:IAO_0000115>
- <rdfs:label>disorder</rdfs:label>
<obi:IAO_0000111>disorder</obi:IAO_0000111>
+ <rdfs:label>disorder</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">A material entity which is clinically
abnormal and part of an extended organism. Disorders are the physical basis
of disease.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0000003">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >reproduction</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >The production by an organism of new individuals that contain some
portion of their genetic material inherited from that
organism.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >reproduction</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10239">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Virus</rdfs:label>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Viruses</rdfs:label>
<rdfs:label xml:lang="en">Viruses</rdfs:label>
- <rdfs:label>Viruses</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_33154">
- <rdfs:label xml:lang="en">Fungi/Metazoa group</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2759"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">Fungi/Metazoa group</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/NCBITaxon"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032991">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A stable assembly of two or more macromolecules, i.e. proteins,
nucleic acids, carbohydrates or lipids, in which the constituent parts
function together.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >macromolecular complex</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >macromolecular complex</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000020">
- <obi:IAO_0000115 xml:lang="en">A quality of a patient that is observed
by the patient or a processual entity experienced by the patient, either of
which is hypothesized by the patient to be a realization of a
disease.</obi:IAO_0000115>
- <rdfs:label>symptom</rdfs:label>
- <obi:IAO_0000111>symptom</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000031">
+ <obi:IAO_0000115 xml:lang="en">A disposition (i) to undergo
pathological processes that (ii) exists in an organism because of one or
more disorders in that organism.</obi:IAO_0000115>
+ <obi:IAO_0000111>disease</obi:IAO_0000111>
+ <rdfs:label>disease</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2759">
- <rdfs:label xml:lang="en">Eukaryota</rdfs:label>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044406">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >adhesion to host</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >adhesion to host</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >The attachment of an organism to its host via adhesion molecules,
general stickiness etc., either directly or indirectly. The host is defined
as the larger of the organisms involved in a symbiotic
interaction.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019815">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >B cell receptor complex</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >B cell receptor complex</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An immunoglobulin complex that is present in the plasma membrane of B
cells and that in its canonical form is composed of two identical
immunoglobulin heavy chains and two identical immunoglobulin light chains
and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta
proteins.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0042101">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >T cell receptor complex</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A protein complex that contains a disulfide-linked heterodimer of T
cell receptor (TCR) chains, which are members of the immunoglobulin
superfamily, and mediates antigen recognition, ultimately resulting in T
cell activation. The TCR heterodimer is associated with the CD3 complex,
which consists of the nonpolymorphic polypeptides gamma, delta, epsilon,
zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon
chains.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >T cell receptor complex</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0040007">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >growth</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >The increase in size or mass of an entire organism, a part of an
organism or a cell.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >growth</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33154">
+ <obi:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Opisthokonta</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Opisthokonta</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100026">
<obi:IAO_0000115 xml:lang="en">A material entity that is an individual
living system, such as animal, plant, bacteria or virus, that is capable of
replicating or reproducing, growth and maintenance in the right
environment. An organism may be unicellular or made up, like humans, of
many billions of cells divided into specialized tissues and
organs.</obi:IAO_0000115>
<obi:IAO_0000111 xml:lang="en">organism</obi:IAO_0000111>
<rdfs:label xml:lang="en">organism</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085030">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An interaction between two organisms living together in more or less
intimate association in a relationship in which both organisms benefit from
each other.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >mutualism</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >mutualism</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >cell</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >cell</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A material entity of anatomical origin (part of or deriving from an
organism) that has as its parts a maximally connected cell compartment
surrounded by a plasma membrane.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Bacteria</rdfs:label>
<rdfs:label xml:lang="en">Bacteria</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000031">
- <obi:IAO_0000115 xml:lang="en">A disposition (i) to undergo
pathological processes that (ii) exists in an organism because of one or
more disorders in that organism.</obi:IAO_0000115>
- <obi:IAO_0000111>disease</obi:IAO_0000111>
- <rdfs:label>disease</rdfs:label>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051704">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >multi-organism process</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >multi-organism process</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A biological process which involves another organism of the same or
different species.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000087">
- <rdfs:label>extended organism</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">An object aggregate consisting of an
organism and all material entities located within the organism, overlapping
the organism, or occupying sites formed in part by the
organism.</obi:IAO_0000115>
- <obi:IAO_0000111>extended organism</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051093">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process that stops, prevents or reduces the rate or extent of
development, the biological process whose specific outcome is the
progression of an organism over time from an initial condition (e.g. a
zygote, or a young adult) to a later condition (e.g. a multicellular animal
or an aged adult).</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of developmental process</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of developmental process</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002250">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An immune response based on directed amplification of specific
receptors for antigen produced through a somatic diversification process,
and allowing for enhanced response to subsequent exposures to the same
antigen (immunological memory).</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >adaptive immune response</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >adaptive immune response</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044403">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >symbiosis, encompassing mutualism through parasitism</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >symbiosis, encompassing mutualism through parasitism</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An interaction between two organisms living together in more or less
intimate association. The term host is usually used for the larger (macro)
of the two members of a symbiosis. The smaller (micro) member is called the
symbiont organism. Microscopic symbionts are often referred to as
endosymbionts. The various forms of symbiosis include parasitism, in which
the association is disadvantageous or destructive to one of the organisms;
mutualism, in which the association is advantageous, or often necessary to
one or both and not harmful to either; and commensalism, in which one
member of the association benefits while the other is not affected.
However, mutualism, parasitism, and commensalism are often not discrete
categories of interactions and should rather be perceived as a continuum of
interaction ranging from parasitism to mutualism. In fact, the direction of
a symbiotic interaction can change during the lifetime of the symbionts due
to developmental changes as well as changes in the biotic/abiotic
environment in which the interaction occurs.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044411">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >entry into host through host barriers</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Penetration by an organism into its host organism via active
breaching of the physical barriers of the host organism. The host is
defined as the larger of the organisms involved in a symbiotic
interaction.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >entry into host through host barriers</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0048525">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of viral reproduction</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process that stops, prevents, or reduces the frequency, rate or
extent of the viral life cycle, the set of processes by which a virus
reproduces and spreads among hosts.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of viral reproduction</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000178">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >blood</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Circulating body substance which consists of blood plasma and
hemoglobin-carrying red blood cells. Excludes blood analogues (see
UBERON:0000179 haemolymphatic fluid).</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >blood</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_00002036">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >habitat</rdfs:label>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >habitat</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A spatial region having environmental qualities which may sustain an
organism or a community of organisms.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032502">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >developmental process</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A biological process whose specific outcome is the progression of an
integrated living unit: an anatomical structure (which may be a subcellular
structure, cell, tissue, or organ), or organism over time from an initial
condition to a later condition.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >developmental process</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0000000">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Biological entity that is either an individual member of a biological
species or constitutes the structural organization of an individual member
of a biological species.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >anatomical entity</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >anatomical entity</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000738">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >leukocyte</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >leukocyte</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >An achromatic cell of the myeloid or lymphoid lineages capable of
ameboid movement, found in blood or other tissue.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0050777">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of immune response</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process that stops, prevents, or reduces the frequency, rate or
extent of the immune response, the immunological reaction of an organism to
an immunogenic stimulus.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >negative regulation of immune response</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044409">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >entry into host</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >entry into host</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Penetration by an organism into the body, tissues, or cells of the
host organism. The host is defined as the larger of the organisms involved
in a symbiotic interaction.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019814">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >immunoglobulin complex</obi:IAO_0000111>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >A protein complex that in its canonical form is composed of two
identical immunoglobulin heavy chains and two identical immunoglobulin
light chains, held together by disulfide bonds and sometimes complexed with
additional proteins. An immunoglobulin complex may be embedded in the
plasma membrane or present in the extracellular space, in mucosal areas or
other tissues, or circulating in the blood or lymph.</obi:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >immunoglobulin complex</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002443">
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any process involved in the carrying out of an immune response by a
leukocyte.</obi:IAO_0000115>
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >leukocyte mediated immunity</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >leukocyte mediated immunity</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2157">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Archaea</rdfs:label>
+ <rdfs:label xml:lang="en">Archaea</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000063">
- <rdfs:label>disease course</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The totality of all processes through
which a given disease instance is realized.</obi:IAO_0000115>
<obi:IAO_0000111>disease course</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">The totality of all processes through
which a given disease instance is realized.</obi:IAO_0000115>
+ <rdfs:label>disease course</rdfs:label>
</owl:Class>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0006955">
- <obi:IAO_0000115 xml:lang="en">Any immune system process that
functions in the calibrated response of an organism to a potential internal
or invasive threat.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">immune response</obi:IAO_0000111>
- <rdfs:label xml:lang="en">immune response</rdfs:label>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0044403">
- <obi:IAO_0000115 xml:lang="en">An interaction between two organisms
living together in more or less intimate association. The term host is
usually used for the larger (macro) of the two members of a symbiosis. The
smaller (micro) member is called the symbiont organism. Microscopic
symbionts are often referred to as endosymbionts. The various forms of
symbiosis include parasitism, in which the association is disadvantageous
or destructive to one of the organisms; mutualism, in which the association
is advantageous, or often necessary to one or both and not harmful to
either; and commensalism, in which one member of the association benefits
while the other is not affected. However, mutualism, parasitism, and
commensalism are often not discrete categories of interactions and should
rather be perceived as a continuum of interaction ranging from parasitism
to mutualism. In fact, the direction of a symbiotic interaction can change
during the lifetime of the symbionts due to developmental changes as well
as changes in the biotic/abiotic environment in which the interaction
occurs.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">symbiosis, encompassing mutualism
through parasitism</obi:IAO_0000111>
- <rdfs:label xml:lang="en">symbiosis, encompassing mutualism through
parasitism</rdfs:label>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0042101">
- <rdfs:label xml:lang="en">T cell receptor complex</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">A protein complex that contains a
disulfide-linked heterodimer of T cell receptor (TCR) chains, which are
members of the immunoglobulin superfamily, and mediates antigen
recognition, ultimately resulting in T cell activation. The TCR heterodimer
is associated with the CD3 complex, which consists of the nonpolymorphic
polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA
splice variant of zeta) or Fc epsilon chains.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">T cell receptor
complex</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0019814">
- <obi:IAO_0000115 xml:lang="en">A protein complex that in its canonical
form is composed of two identical immunoglobulin heavy chains and two
identical immunoglobulin light chains, held together by disulfide bonds and
sometimes complexed with additional proteins. An immunoglobulin complex may
be embedded in the plasma membrane or present in the extracellular space,
in mucosal areas or other tissues, or circulating in the blood or
lymph.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">immunoglobulin complex</obi:IAO_0000111>
- <rdfs:label xml:lang="en">immunoglobulin complex</rdfs:label>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/CL#CL_0000738">
- <obi:IAO_0000115 xml:lang="en">An achromatic cell of the myeloid or
lymphoid lineages capable of ameboid movement, found in blood or other
tissue.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">leukocyte</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">leukocyte</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/TRANS#TRANS_0000000">
- <obi:IAO_0000115 xml:lang="en">A process that is the means during
which the pathogen is transmitted directly or indirectly from its natural
reservoir, a susceptible host or source to a new host.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">transmission process</obi:IAO_0000111>
- <rdfs:label xml:lang="en">transmission process</rdfs:label>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0006959">
- <obi:IAO_0000115 xml:lang="en">An immune response mediated through a
body fluid.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">humoral immune
response</obi:IAO_0000111>
- <rdfs:label xml:lang="en">humoral immune response</rdfs:label>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0085031">
- <rdfs:label xml:lang="en">commensalism</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">commensalism</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">An interaction between two organisms
living together in more or less intimate association in a relationship in
which one benefits and the other is unaffected.</obi:IAO_0000115>
- </rdf:Description>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/UBERON#UBERON_0000178">
- <obi:IAO_0000115 xml:lang="en">Circulating body substance which
consists of blood plasma and hemoglobin-carrying red blood cells. Excludes
blood analogues (see UBERON:0000179 haemolymphatic fluid).</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">blood</obi:IAO_0000111>
- <rdfs:label xml:lang="en">blood</rdfs:label>
- </rdf:Description>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367">
+ <obi:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >molecular entity</obi:IAO_0000111>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >molecular entity</rdfs:label>
+ <obi:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
+ >Any constitutionally or isotopically distinct atom, molecule, ion,
ion pair, radical, radical ion, complex, conformer etc., identifiable as a
separately distinguishable entity.</obi:IAO_0000115>
+ </owl:Class>
<owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0051093">
- <rdfs:label xml:lang="en">negative regulation of developmental
process</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that stops, prevents or
reduces the rate or extent of development, the biological process whose
specific outcome is the progression of an organism over time from an
initial condition (e.g. a zygote, or a young adult) to a later condition
(e.g. a multicellular animal or an aged adult).</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">negative regulation of developmental
process</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0044406">
- <obi:IAO_0000115 xml:lang="en">The attachment of an organism to its
host via adhesion molecules, general stickiness etc., either directly or
indirectly. The host is defined as the larger of the organisms involved in
a symbiotic interaction.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">adhesion to host</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">adhesion to host</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0002250">
- <obi:IAO_0000111 xml:lang="en">adaptive immune
response</obi:IAO_0000111>
- <rdfs:label xml:lang="en">adaptive immune response</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">An immune response based on directed
amplification of specific receptors for antigen produced through a somatic
diversification process, and allowing for enhanced response to subsequent
exposures to the same antigen (immunological memory).</obi:IAO_0000115>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0048525">
- <obi:IAO_0000115 xml:lang="en">Any process that stops, prevents, or
reduces the frequency, rate or extent of the viral life cycle, the set of
processes by which a virus reproduces and spreads among
hosts.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">negative regulation of viral
reproduction</obi:IAO_0000111>
- <rdfs:label xml:lang="en">negative regulation of viral
reproduction</rdfs:label>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367">
- <obi:IAO_0000111 xml:lang="en">molecular entity</obi:IAO_0000111>
- <rdfs:label xml:lang="en">molecular entity</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any constitutionally or isotopically
distinct atom, molecule, ion, ion pair, radical, radical ion, complex,
conformer etc., identifiable as a separately distinguishable
entity.</obi:IAO_0000115>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0008150">
- <obi:IAO_0000115 xml:lang="en">Any process specifically pertinent to
the functioning of integrated living units: cells, tissues, organs, and
organisms. A process is a collection of molecular events with a defined
beginning and end.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">biological_process</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">biological_process</obi:IAO_0000111>
- </rdf:Description>
<owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
- <rdf:Description rdf:about="http://purl.org/obo/owl/TRANS#TRANS_0000002">
- <obi:IAO_0000111 xml:lang="en">indirect</obi:IAO_0000111>
- <rdfs:label xml:lang="en">indirect</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Indirect transmission is a transmission
process during which the pathogen is indirectly transferred from a
reservoir, source or host to another host by intermediary vehicles, vectors
or as airborne dust particles.</obi:IAO_0000115>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0032502">
- <rdfs:label xml:lang="en">developmental process</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">A biological process whose specific
outcome is the progression of an integrated living unit: an anatomical
structure (which may be a subcellular structure, cell, tissue, or organ),
or organism over time from an initial condition to a later
condition.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">developmental process</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0050777">
- <rdfs:label xml:lang="en">negative regulation of immune
response</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that stops, prevents, or
reduces the frequency, rate or extent of the immune response, the
immunological reaction of an organism to an immunogenic
stimulus.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">negative regulation of immune
response</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0085030">
- <rdfs:label xml:lang="en">mutualism</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">An interaction between two organisms
living together in more or less intimate association in a relationship in
which both organisms benefit from each other.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">mutualism</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0051234">
- <obi:IAO_0000111 xml:lang="en">establishment of
localization</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">The directed movement of a cell,
substance or cellular entity, such as a protein complex or organelle, to a
specific location.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">establishment of localization</rdfs:label>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0032991">
- <obi:IAO_0000111 xml:lang="en">macromolecular complex</obi:IAO_0000111>
- <rdfs:label xml:lang="en">macromolecular complex</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">A stable assembly of two or more
macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in
which the constituent parts function together.</obi:IAO_0000115>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/CARO#CARO_0000000">
- <obi:IAO_0000115 xml:lang="en">Biological entity that is either an
individual member of a biological species or constitutes the structural
organization of an individual member of a biological
species.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">anatomical entity</obi:IAO_0000111>
- <rdfs:label xml:lang="en">anatomical entity</rdfs:label>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0051704">
- <rdfs:label xml:lang="en">multi-organism process</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process in which an organism has an
effect on another organism of the same or different
species.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">multi-organism process</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0043093">
- <obi:IAO_0000115 xml:lang="en">A cytokinesis process that involves a
set of conserved proteins including FtsZ, and results in the formation of
two similarly sized and shaped cells; the process in which prokaryotic
cells divide.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">cytokinesis by binary
fission</obi:IAO_0000111>
- <rdfs:label xml:lang="en">cytokinesis by binary fission</rdfs:label>
- </rdf:Description>
<owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0044411">
- <rdfs:label xml:lang="en">entry into host through host
barriers</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Penetration by an organism into its
host organism via active breaching of the physical barriers of the host
organism. The host is defined as the larger of the organisms involved in a
symbiotic interaction.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">entry into host through host
barriers</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/ENVO#ENVO_00002036">
- <obi:IAO_0000111 xml:lang="en">habitat</obi:IAO_0000111>
- <rdfs:label xml:lang="en">habitat</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">A spatial region having environmental
qualities which may sustain an organism or a community of
organisms.</obi:IAO_0000115>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/CL#CL_0000000">
- <obi:IAO_0000115 xml:lang="en">Anatomical structure that has as its
parts a maximally connected cell compartment surrounded by a plasma
membrane.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">cell</obi:IAO_0000111>
- <rdfs:label xml:lang="en">cell</rdfs:label>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0040007">
- <rdfs:label xml:lang="en">growth</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The increase in size or mass of an
entire organism, a part of an organism or a cell.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">growth</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0000003">
- <rdfs:label xml:lang="en">reproduction</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The production by an organism of new
individuals that contain some portion of their genetic material inherited
from that organism.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">reproduction</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0065007">
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of any biological process, quality or
function.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">biological regulation</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">biological regulation</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0002443">
- <obi:IAO_0000115 xml:lang="en">Any process involved in the carrying
out of an immune response by a leukocyte.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">leukocyte mediated
immunity</obi:IAO_0000111>
- <rdfs:label xml:lang="en">leukocyte mediated immunity</rdfs:label>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0045087">
- <obi:IAO_0000111 xml:lang="en">innate immune response</obi:IAO_0000111>
- <rdfs:label xml:lang="en">innate immune response</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Innate immune responses are defense
responses mediated by germline encoded components that directly recognize
components of potential pathogens.</obi:IAO_0000115>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0016265">
- <obi:IAO_0000115 xml:lang="en">A permanent cessation of all vital
functions: the end of life; can be applied to a whole organism or to a part
of an organism.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">death</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">death</obi:IAO_0000111>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0019815">
- <obi:IAO_0000111 xml:lang="en">B cell receptor
complex</obi:IAO_0000111>
- <rdfs:label xml:lang="en">B cell receptor complex</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">An immunoglobulin complex that is
present in the plasma membrane of B cells and that in its canonical form is
composed of two identical immunoglobulin heavy chains and two identical
immunoglobulin light chains and a signaling subunit, a heterodimer of the
Ig-alpha and Ig-beta proteins.</obi:IAO_0000115>
- </rdf:Description>
- <rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0044409">
- <rdfs:label xml:lang="en">entry into host</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Penetration by an organism into the
body, tissues, or cells of the host organism. The host is defined as the
larger of the organisms involved in a symbiotic
interaction.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">entry into host</obi:IAO_0000111>
- </rdf:Description>
</rdf:RDF>
=======================================
--- /trunk/src/ontology/ido-core/ido-external.owl Fri Sep 2 01:00:00 2011
UTC
+++ /trunk/src/ontology/ido-core/ido-external.owl Fri Nov 15 06:37:40 2013
UTC
@@ -4,19 +4,11 @@
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
- xmlns:ENVO="http://purl.org/obo/owl/ENVO#"
- xmlns:CARO="http://purl.org/obo/owl/CARO#"
xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
- xmlns:NCBITaxon="http://purl.org/obo/owl/NCBITaxon#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
- xmlns:GO="http://purl.org/obo/owl/GO#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
- xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
- xmlns:TRANS="http://purl.org/obo/owl/TRANS#"
- xmlns:CL="http://purl.org/obo/owl/CL#"
xmlns:span="http://www.ifomis.org/bfo/1.1/span#">
<owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/ido-external.owl">
<rdfs:comment >This file is the MIREOT specification file - see
http://obi-ontology.org/page/MIREOT</rdfs:comment>
@@ -102,335 +94,335 @@



- <!-- http://purl.org/obo/owl/CARO#CARO_0000000 -->
+ <!-- http://purl.obolibrary.org/obo/CARO_0000000 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/CARO#CARO_0000000">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0000000">
<rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/CARO"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/caro.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/CHEBI#CHEBI_23367 -->
+ <!-- http://purl.obolibrary.org/obo/CHEBI_23367 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367">
<rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/CHEBI"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/chebi.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/CL#CL_0000000 -->
+ <!-- http://purl.obolibrary.org/obo/CL_0000000 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/CL#CL_0000000">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/CL"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/CL#CL_0000738 -->
+ <!-- http://purl.obolibrary.org/obo/CL_0000738 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/CL#CL_0000738">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CL#CL_0000000"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/CL"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000738">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/ENVO#ENVO_00002036 -->
+ <!-- http://purl.obolibrary.org/obo/ENVO_00002036 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/ENVO#ENVO_00002036">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_00002036">
<rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Site"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/ENVO"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/envo.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0000003 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0000003 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0000003">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0000003">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0002250 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0002250 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002250">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0006955"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002250">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0006955"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0002443 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0002443 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002443">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0006955"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002443">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0006955"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0006955 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0006955 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006955">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006955">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0006959 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0006959 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006959">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0006955"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006959">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0006955"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0008150 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0008150 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150">
<rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0016265 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0016265 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016265">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0016265">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0019814 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0019814 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019814">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0032991"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019814">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0032991"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0019815 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0019815 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019815">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0032991"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019815">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0032991"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0032502 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0032502 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032502">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032502">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0040007 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0040007 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0040007">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0040007">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0042101 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0042101 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042101">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0032991"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0042101">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0032991"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0043093 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0043093 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043093">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0000003"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0043093">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0000003"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0044403 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0044403 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044403">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0051704"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044403">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0051704"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0044406 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0044406 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044406">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044406">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0044409 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0044409 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044409">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0051704"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044409">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0051704"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0044411 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0044411 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044411">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0044409"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044411">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0044409"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0045087 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0045087 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045087">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0006955"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0045087">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0006955"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0048525 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0048525 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048525">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0065007"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0048525">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0065007"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0050777 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0050777 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050777">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0065007"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0050777">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0065007"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0051093 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0051093 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051093">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0065007"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051093">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0065007"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0051234 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0051234 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051234">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051234">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0051704 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0051704 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051704">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051704">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0065007 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0065007 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065007">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0065007">
<rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0085030 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0085030 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0085030">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0044403"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085030">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0044403"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/GO#GO_0085031 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0085031 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0085031">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0044403"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085031">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/GO_0044403"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239 -->
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_10239 -->

- <owl:Class
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10239">
<rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/NCBITaxon"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2 -->
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_2 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2">
<rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/NCBITaxon"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2759 -->
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_2759 -->

- <owl:Class
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2759">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2759">
<rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/NCBITaxon"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_33154 -->
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_33154 -->

- <owl:Class
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_33154">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2759"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/NCBITaxon"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33154">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/TRANS#TRANS_0000000 -->
+ <!-- http://purl.obolibrary.org/obo/TRANS_0000000 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/TRANS#TRANS_0000000">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000000">
<rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/TRANS"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/trans.owl"/>
</owl:Class>



- <!-- http://purl.org/obo/owl/TRANS#TRANS_0000002 -->
+ <!-- http://purl.obolibrary.org/obo/TRANS_0000002 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/TRANS#TRANS_0000002">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000000"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/TRANS"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000002">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
+ <IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/trans.owl"/>
</owl:Class>


@@ -468,15 +460,15 @@
<!-- http://www.ifomis.org/bfo/1.1/span#ProcessualEntity -->

<owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032991">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032991">
<rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>


- <owl:Class rdf:about="http://purl.org/obo/owl/UBERON#UBERON_0000178">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
- <IAO_0000412 rdf:resource="http://purl.org/obo/owl/UBERON"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000178">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
+ <IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
</owl:Class>
</rdf:RDF>

=======================================
--- /trunk/src/ontology/ido-core/ido-main.owl Tue Dec 21 00:51:31 2010 UTC
+++ /trunk/src/ontology/ido-core/ido-main.owl Fri Nov 15 06:37:40 2013 UTC
@@ -2,20 +2,20 @@
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/ido/ido-axioms.owl#"
xml:base="http://purl.obolibrary.org/obo/ido/ido-axioms.owl"
xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
- xmlns:CARO="http://purl.org/obo/owl/CARO#"
+ xmlns:CARO="http://purl.obolibrary.org/obo/"
xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
- xmlns:NCBITaxon="http://purl.org/obo/owl/NCBITaxon#"
+ xmlns:NCBITaxon="http://purl.obolibrary.org/obo/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
- xmlns:UBERON="http://purl.org/obo/owl/UBERON#"
- xmlns:GO="http://purl.org/obo/owl/GO#"
+ xmlns:UBERON="http://purl.obolibrary.org/obo/"
+ xmlns:GO="http://purl.obolibrary.org/obo/"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
+ xmlns:CHEBI="http://purl.obolibrary.org/obo/"
xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#"
- xmlns:TRANS="http://purl.org/obo/owl/TRANS#"
- xmlns:CL="http://purl.org/obo/owl/CL#"
+ xmlns:TRANS="http://purl.obolibrary.org/obo/"
+ xmlns:CL="http://purl.obolibrary.org/obo/"
xmlns:span="http://www.ifomis.org/bfo/1.1/span#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ido.owl">
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/ido-base.owl"/>
@@ -279,7 +279,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#participates_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0044403"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0044403"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -313,7 +313,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#participates_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0085030"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0085030"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -336,7 +336,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#participates_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0085031"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0085031"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -421,7 +421,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_part"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000000"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_part"/>
@@ -471,7 +471,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_part"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000000"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_part"/>
@@ -683,7 +683,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000002"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000002"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -724,7 +724,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000002"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000002"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -759,7 +759,7 @@

<owl:someValuesFrom>

<owl:Class>

<owl:intersectionOf rdf:parseType="Collection">
-
<rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0000003"/>
+
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/GO_0000003"/>

<owl:Restriction>

<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#unfolds_in"/>

<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
@@ -780,7 +780,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000002"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000002"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -813,7 +813,7 @@

<owl:someValuesFrom>
<owl:Class>

<owl:intersectionOf rdf:parseType="Collection">
-
<rdf:Description rdf:about="http://purl.org/obo/owl/GO#GO_0000003"/>
+
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/GO_0000003"/>

<owl:Restriction>

<owl:onProperty rdf:resource="http://purl.org/obo/owl/OBO_REL#unfolds_in"/>

<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
@@ -832,7 +832,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000002"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000002"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -867,7 +867,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000002"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000002"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -919,7 +919,7 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000426"/>
@@ -950,7 +950,7 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000437"/>
@@ -988,7 +988,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
@@ -998,7 +998,7 @@
<rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000000"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -1026,7 +1026,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
@@ -1036,7 +1036,7 @@
<rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000000"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -1085,15 +1085,15 @@
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000660"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0016265"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0016265"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0000003"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0000003"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0032502"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0032502"/>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
@@ -1143,15 +1143,15 @@
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000660"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0016265"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0016265"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0000003"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0000003"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0032502"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0032502"/>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
@@ -1283,11 +1283,11 @@
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0044406"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0044406"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -1320,14 +1320,14 @@
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
<owl:allValuesFrom>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#positively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0044411"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0044411"/>
</owl:Restriction>
</owl:allValuesFrom>
</owl:Restriction>
@@ -1373,15 +1373,15 @@
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000660"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0016265"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0016265"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0000003"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0000003"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0032502"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0032502"/>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
@@ -1424,10 +1424,10 @@
<rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
<owl:Class>
<owl:unionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0048525"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/GO_0048525"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000660"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0016265"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0016265"/>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
@@ -1475,15 +1475,15 @@
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000660"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0016265"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0016265"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0000003"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0000003"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0032502"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0032502"/>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
@@ -1530,11 +1530,11 @@
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000660"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0016265"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0016265"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0043093"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0043093"/>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
@@ -1580,15 +1580,15 @@
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000660"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0016265"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0016265"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0000003"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0000003"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0032502"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0032502"/>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
@@ -1746,7 +1746,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0044411"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0044411"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -1788,7 +1788,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_part"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000000"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -2061,7 +2061,7 @@
<owl:complementOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#located_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CL#CL_0000000"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
</owl:Restriction>
</owl:complementOf>
</owl:Class>
@@ -2092,7 +2092,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000596"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#located_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CL#CL_0000000"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -2361,7 +2361,7 @@
</owl:Class>
</owl:equivalentClass>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000617"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -2379,10 +2379,10 @@
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000596"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10239"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#located_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/UBERON#UBERON_0000178"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000178"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -2409,10 +2409,10 @@
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000596"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#located_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/UBERON#UBERON_0000178"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000178"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -2617,7 +2617,7 @@
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000555"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000556"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000617"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -2891,7 +2891,7 @@
</owl:equivalentClass>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000045"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -2921,7 +2921,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000425"/>
@@ -2939,7 +2939,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000438"/>
@@ -2957,7 +2957,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000426"/>
@@ -2975,7 +2975,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000427"/>
@@ -3019,7 +3019,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/CARO_0000000"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_role"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000430"/>
@@ -3037,7 +3037,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/CARO_0000000"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_role"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000431"/>
@@ -3066,7 +3066,7 @@
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000586"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000045"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -3088,7 +3088,7 @@
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000586"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000045"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -3099,7 +3099,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000437"/>
@@ -3127,7 +3127,7 @@
</owl:equivalentClass>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000586"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000045"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -3148,7 +3148,7 @@
</owl:equivalentClass>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000586"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000045"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -3169,7 +3169,7 @@
</owl:equivalentClass>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000586"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000045"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -3190,7 +3190,7 @@
</owl:equivalentClass>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000586"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000045"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -3211,7 +3211,7 @@
</owl:equivalentClass>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000586"/>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000045"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -3234,7 +3234,7 @@
<owl:allValuesFrom>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000660"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0016265"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0016265"/>
</owl:Restriction>
</owl:allValuesFrom>
</owl:Restriction>
@@ -3265,7 +3265,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000440"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0016265"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0016265"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -3298,11 +3298,11 @@
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
-
<owl:someValuesFrom rdf:resource="http://purl.org/obo/owl/GO#GO_0000003"/>
+
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0000003"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
-
<owl:someValuesFrom rdf:resource="http://purl.org/obo/owl/GO#GO_0032502"/>
+
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0032502"/>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
@@ -3583,7 +3583,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0045087"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0045087"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -3604,7 +3604,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006959"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0006959"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -3622,15 +3622,15 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000448"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000664"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CL#CL_0000738"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/CL_0000738"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000664"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/CL#CL_0000738"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/CL_0000738"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0002443"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0002443"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -3731,7 +3731,7 @@
</owl:Class>
</rdfs:subClassOf>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000617"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -3874,7 +3874,7 @@
<rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006955"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0006955"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -3921,7 +3921,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000617">
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000665"/>
- <owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</owl:Class>


@@ -3938,7 +3938,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006955"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0006955"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -3987,9 +3987,9 @@
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0019814"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0019815"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0042101"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/GO_0019814"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/GO_0019815"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/GO_0042101"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
@@ -3999,16 +3999,16 @@
<owl:allValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0019814"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0019815"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0042101"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/GO_0019814"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/GO_0019815"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/GO_0042101"/>
</owl:unionOf>
</owl:Class>
</owl:allValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0002250"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0002250"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -4398,7 +4398,7 @@
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
- <owl:allValuesFrom
rdf:resource="http://purl.org/obo/owl/TRANS#TRANS_0000000"/>
+ <owl:allValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -4483,167 +4483,167 @@



- <!-- http://purl.org/obo/owl/CARO#CARO_0000000 -->
+ <!-- http://purl.obolibrary.org/obo/CARO_0000000 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0000000"/>



- <!-- http://purl.org/obo/owl/CHEBI#CHEBI_23367 -->
+ <!-- http://purl.obolibrary.org/obo/CHEBI_23367 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367"/>



- <!-- http://purl.org/obo/owl/CL#CL_0000000 -->
+ <!-- http://purl.obolibrary.org/obo/CL_0000000 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/CL#CL_0000000"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000"/>



- <!-- http://purl.org/obo/owl/CL#CL_0000738 -->
+ <!-- http://purl.obolibrary.org/obo/CL_0000738 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/CL#CL_0000738"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000738"/>



- <!-- http://purl.org/obo/owl/GO#GO_0000003 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0000003 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0000003"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0000003"/>



- <!-- http://purl.org/obo/owl/GO#GO_0002250 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0002250 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002250"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002250"/>



- <!-- http://purl.org/obo/owl/GO#GO_0002443 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0002443 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002443"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002443"/>



- <!-- http://purl.org/obo/owl/GO#GO_0006955 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0006955 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006955"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006955"/>



- <!-- http://purl.org/obo/owl/GO#GO_0006959 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0006959 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006959"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006959"/>



- <!-- http://purl.org/obo/owl/GO#GO_0016265 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0016265 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016265"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0016265"/>



- <!-- http://purl.org/obo/owl/GO#GO_0019814 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0019814 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019814"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019814"/>



- <!-- http://purl.org/obo/owl/GO#GO_0019815 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0019815 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019815"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019815"/>



- <!-- http://purl.org/obo/owl/GO#GO_0032502 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0032502 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032502"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032502"/>



- <!-- http://purl.org/obo/owl/GO#GO_0042101 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0042101 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042101"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0042101"/>



- <!-- http://purl.org/obo/owl/GO#GO_0043093 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0043093 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043093"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0043093"/>



- <!-- http://purl.org/obo/owl/GO#GO_0044403 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0044403 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044403"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044403"/>



- <!-- http://purl.org/obo/owl/GO#GO_0044406 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0044406 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044406"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044406"/>



- <!-- http://purl.org/obo/owl/GO#GO_0044411 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0044411 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044411"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044411"/>



- <!-- http://purl.org/obo/owl/GO#GO_0045087 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0045087 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045087"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0045087"/>



- <!-- http://purl.org/obo/owl/GO#GO_0048525 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0048525 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048525"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0048525"/>



- <!-- http://purl.org/obo/owl/GO#GO_0085030 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0085030 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0085030"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085030"/>



- <!-- http://purl.org/obo/owl/GO#GO_0085031 -->
+ <!-- http://purl.obolibrary.org/obo/GO_0085031 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0085031"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085031"/>



- <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239 -->
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_10239 -->

- <owl:Class
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10239"/>



- <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2 -->
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_2 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2"/>



- <!-- http://purl.org/obo/owl/TRANS#TRANS_0000000 -->
+ <!-- http://purl.obolibrary.org/obo/TRANS_0000000 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/TRANS#TRANS_0000000"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000000"/>



- <!-- http://purl.org/obo/owl/TRANS#TRANS_0000002 -->
+ <!-- http://purl.obolibrary.org/obo/TRANS_0000002 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/TRANS#TRANS_0000002">
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000002">
<rdfs:label>Suggested label: indirect pathogen transmission
process</rdfs:label>
</owl:Class>



- <!-- http://purl.org/obo/owl/UBERON#UBERON_0000178 -->
+ <!-- http://purl.obolibrary.org/obo/UBERON_0000178 -->

- <owl:Class rdf:about="http://purl.org/obo/owl/UBERON#UBERON_0000178"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000178"/>