[infectious-disease-ontology] r355 committed - add ido-staph

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Revision: 355
Author: alanruttenberg
Date: Wed Mar 14 10:27:26 2012
Log: add ido-staph
http://code.google.com/p/infectious-disease-ontology/source/detail?r=355

Added:
/trunk/src/ontology/ido-staph
Modified:

/trunk/src/ontology/immunology/proto/LPS-recognition-and-signaling-via-TLR4-pathway-external-derived.owl

/trunk/src/ontology/immunology/proto/LPS-recognition-and-signaling-via-TLR4-pathway-external.owl

/trunk/src/ontology/immunology/proto/LPS-recognition-and-signaling-via-TLR4-pathway.owl

/trunk/src/ontology/immunology/proto/TLR2-Lta-signaling-pathway-external-derived.owl

/trunk/src/ontology/immunology/proto/TLR2-Lta-signaling-pathway-external.owl
/trunk/src/ontology/immunology/proto/TLR2-Lta-signaling-pathway.owl

/trunk/src/ontology/immunology/proto/dsRNA-recognition-and-signaling-via-TLR3-pathway-external.owl

/trunk/src/ontology/immunology/proto/dsRNA-recognition-and-signaling-via-TLR3-pathway.owl

/trunk/src/ontology/immunology/proto/dsrna-recognition-and-signaling-via-tlr3-pathway-external-derived.owl

=======================================
---
/trunk/src/ontology/immunology/proto/LPS-recognition-and-signaling-via-TLR4-pathway-external-derived.owl
Thu Oct 21 10:38:40 2010
+++
/trunk/src/ontology/immunology/proto/LPS-recognition-and-signaling-via-TLR4-pathway-external-derived.owl
Wed Mar 14 10:27:26 2012
@@ -1,2919 +1,58 @@
<?xml version="1.0"?>
<rdf:RDF
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:obi="http://purl.obolibrary.org/obo/"

xmlns:protege-dc="http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl#"
+ xmlns:ncbitax="http://purl.org/obo/owl/NCBITaxon#"
+ xmlns:daml="http://www.daml.org/2001/03/daml+oil#"
+ xmlns:obi_rel="http://purl.obolibrary.org/obo/obi/Relations.owl#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:obi_func="http://purl.obolibrary.org/obo/obi/OBI-Function.owl#"

xmlns:obi_owlfull="http://purl.obolibrary.org/obo/obi/obi-owl-full.owl#"
- xmlns:pato="http://purl.org/obo/owl/PATO#"
-
xmlns:obi_plan="http://purl.obolibrary.org/obo/obi/PlanAndPlannedProcess.owl#"
- xmlns:pro="http://purl.org/obo/owl/PRO#"
-
xmlns:obi_extd="http://purl.obolibrary.org/obo/obi/externalDerived.owl#"
-
xmlns:obi_annot="http://purl.obolibrary.org/obo/obi/AnnotationProperty.owl#"
- xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
- xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:obi_biomat="http://purl.obolibrary.org/obo/obi/Biomaterial.owl#"
+ xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:rotoo="http://purl.org/obo/owl/ro#"
- xmlns:dc="http://purl.org/dc/elements/1.1/"
- xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
- xmlns:go="http://purl.org/obo/owl/GO#"
- xmlns:obi_quality="http://purl.obolibrary.org/obo/obi/Quality.owl#"
- xmlns:bfo="http://www.ifomis.org/bfo/1.1#"
- xmlns:robfo="http://purl.org/obo/owl/ro_bfo_bridge/1.1#"
- xmlns:envo="http://purl.org/obo/owl/ENVO#"
- xmlns:owl="http://www.w3.org/2002/07/owl#"
- xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:obi_ext="http://purl.obolibrary.org/obo/obi/external.owl#"
- xmlns:ncbitax="http://purl.org/obo/owl/NCBITaxon#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+ xmlns:bfo="http://www.ifomis.org/bfo/1.1#"
+
xmlns:obi_annot="http://purl.obolibrary.org/obo/obi/AnnotationProperty.owl#"
+
xmlns:obi_plan="http://purl.obolibrary.org/obo/obi/PlanAndPlannedProcess.owl#"
+ xmlns:pato="http://purl.org/obo/owl/PATO#"
+ xmlns:cell="http://purl.org/obo/owl/CL#"
+
xmlns:obi_extd="http://purl.obolibrary.org/obo/obi/externalDerived.owl#"
+ xmlns:obi_role="http://purl.obolibrary.org/obo/obi/Role.owl#"

xmlns:obi_instr="http://purl.obolibrary.org/obo/obi/InstrumentAndPart.owl#"
- xmlns:obi_rel="http://purl.obolibrary.org/obo/obi/Relations.owl#"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:envo="http://purl.org/obo/owl/ENVO#"
+ xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
xmlns:caro="http://purl.org/obo/owl/CARO#"
- xmlns:so="http://purl.org/obo/owl/SO#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
- xmlns:cell="http://purl.org/obo/owl/CL#"
- xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+ xmlns:robfo="http://purl.org/obo/owl/ro_bfo_bridge/1.1#"
+ xmlns:obi_quality="http://purl.obolibrary.org/obo/obi/Quality.owl#"
+ xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
+ xmlns:rotoo="http://purl.org/obo/owl/ro#"
+ xmlns:pro="http://purl.org/obo/owl/PRO#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"

xmlns:obi_denrie="http://purl.obolibrary.org/obo/obi/DigitalEntityPlus.owl#"
- xmlns:obi_func="http://purl.obolibrary.org/obo/obi/OBI-Function.owl#"
- xmlns:obi_role="http://purl.obolibrary.org/obo/obi/Role.owl#"
- xmlns:obi="http://purl.obolibrary.org/obo/"
- xmlns:span="http://www.ifomis.org/bfo/1.1/span#"
- xmlns:daml="http://www.daml.org/2001/03/daml+oil#"
+ xmlns:so="http://purl.org/obo/owl/SO#"
+ xmlns:go="http://purl.org/obo/owl/GO#"
xmlns:chebi="http://purl.org/obo/owl/CHEBI#"
-
xml:base="http://purl.obolibrary.org/obo/ido/dev/LPS-recognition-and-signaling-via-TLR4-pathway-external-derived.owl">
- <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/dev/LPS-recognition-and-signaling-via-TLR4-pathway-external-derived.owl"/>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016579">
- <obi:IAO_0000115 xml:lang="en">The removal of one or more ubiquitin
moieties from a protein.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">protein
deubiquitination</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">protein deubiquitination</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070646"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043687"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0018193">
- <rdfs:label xml:lang="en">peptidyl-amino acid modification</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">peptidyl-amino acid
modification</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">The alteration of an amino acid residue
in a peptide.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006464"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071530">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006461"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">FHA domain-mediated complex
assembly</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">A process of protein complex assembly
in which the arrangement and bonding together of the set of components that
form the protein complex is mediated by an FHA (forkhead-associated) domain
interaction.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">FHA domain-mediated complex
assembly</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002682">
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate, or extent of an immune system process.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050789"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">regulation of immune system
process</obi:IAO_0000111>
- <rdfs:label xml:lang="en">regulation of immune system
process</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008329">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">pattern recognition receptor
activity</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Combining with a molecular pattern
based on a repeating or polymeric structure, such as a polysaccharide or
peptidoglycan, to initiate a change in cell activity. Such molecular
patterns are sometimes associated with potential
pathogens.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">pattern recognition receptor
activity</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0004872"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032507">
- <obi:IAO_0000111 xml:lang="en">maintenance of protein location in
cell</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">maintenance of protein location in
cell</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051651"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process by which a protein is
maintained in a specific location within, or in the membrane of, a cell,
and is prevented from moving elsewhere.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045185"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043412">
- <rdfs:label xml:lang="en">macromolecule modification</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The covalent alteration of one or more
monomeric units in a polypeptide, polynucleotide, polysaccharide, or other
biological macromolecule, resulting in a change in its
properties.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043170"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">macromolecule
modification</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0000060">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006886"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">protein import into nucleus,
translocation</obi:IAO_0000111>
- <rdfs:label xml:lang="en">protein import into nucleus,
translocation</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The vectorial transfer of a protein
from the cytoplasm into the nucleus, through the nuclear pore and across
the nuclear envelope.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016023">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031410"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">cytoplasmic membrane-bounded
vesicle</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">A membrane-bounded vesicle found in the
cytoplasm of the cell.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">cytoplasmic membrane-bounded
vesicle</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031988"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043231"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008588">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042346"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The release of NF-kappaB from specific
molecules in the cytoplasm to which it was bound, thereby allowing its
translocation into the nucleus.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">release of cytoplasmic sequestered
NF-kappaB</obi:IAO_0000111>
- <rdfs:label xml:lang="en">release of cytoplasmic sequestered
NF-kappaB</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034144">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034143"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034122"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that stops, prevents, or
reduces the frequency, rate, or extent of toll-like receptor 4 signaling
pathway.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">negative regulation of toll-like receptor 4
signaling pathway</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">negative regulation of toll-like
receptor 4 signaling pathway</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032403">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005515"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">protein complex binding</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any protein complex (a complex of two or more proteins
that may include other nonprotein molecules).</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">protein complex
binding</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044237">
- <obi:IAO_0000111 xml:lang="en">cellular metabolic
process</obi:IAO_0000111>
- <rdfs:label xml:lang="en">cellular metabolic process</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008152"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways by
which individual cells transform chemical substances.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009987"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0080134">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048583"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">regulation of response to
stress</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of a response to stress. Response to stress is a
change in state or activity of a cell or an organism (in terms of movement,
secretion, enzyme production, gene expression, etc.) as a result of a
disturbance in organismal or cellular homeostasis, usually, but not
necessarily, exogenous (e.g. temperature, humidity, ionizing
radiation).</obi:IAO_0000115>
- <rdfs:label xml:lang="en">regulation of response to stress</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051049">
- <rdfs:label xml:lang="en">regulation of transport</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the directed movement of substances (such as
macromolecules, small molecules, ions) into, out of, within or between
cells by means of some external agent such as a transporter or
pore.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032879"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">regulation of
transport</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0004872">
- <rdfs:label xml:lang="en">receptor activity</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0004871"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">receptor activity</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Combining with an extracellular or
intracellular messenger to initiate a change in cell
activity.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071552">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006461"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">A process of protein complex assembly
in which the arrangement and bonding together of the set of components that
form the protein complex is mediated by a RIP homotypic interaction motif
(RHIM) interaction.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">RIP homotypic interaction motif-mediated
complex assembly</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">RIP homotypic interaction
motif-mediated complex assembly</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0060089">
- <obi:IAO_0000111 xml:lang="en">molecular transducer
activity</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The molecular function that accepts an
input of one form and creates an output of a different
form.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003674"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">molecular transducer activity</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071536">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006461"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">RING-like zinc finger domain-mediated
complex assembly</obi:IAO_0000111>
- <rdfs:label xml:lang="en">RING-like zinc finger domain-mediated
complex assembly</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">A process of protein complex assembly
in which the arrangement and bonding together of the set of components that
form the protein complex is mediated by a RING-like zinc finger domain
interaction.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070936">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016567"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">protein K48-linked
ubiquitination</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">A protein ubiquitination process in
which a polymer of ubiquitin, formed by linkages between lysine residues at
position 48 of the ubiquitin monomers, is added to a protein. K48-linked
ubiquitination targets the substrate protein for
degradation.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">protein K48-linked
ubiquitination</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042803">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042802"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046983"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">protein homodimerization
activity</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with an identical protein to form a
homodimer.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">protein homodimerization
activity</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0023033">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The series of molecular events whereby
information is sent from one location to another within a living organism
or between living organisms.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">signaling pathway</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0023052"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">signaling pathway</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0017038">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0015031"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">protein import</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The directed movement of proteins into
a cell or organelle.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">protein import</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048583">
- <obi:IAO_0000111 xml:lang="en">regulation of response to
stimulus</obi:IAO_0000111>
- <rdfs:label xml:lang="en">regulation of response to
stimulus</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of a response to a stimulus. Response to stimulus
is a change in state or activity of a cell or an organism (in terms of
movement, secretion, enzyme production, gene expression, etc.) as a result
of a stimulus.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050789"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071551">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">RIP homotypic interaction motif
binding</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a RIP homotypic interaction motif (RHIM) of a protein.
The RHIM is a 16-amino-acid motif found in some members, including RIP3, of
a family of related kinases.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">RIP homotypic interaction motif
binding</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051170">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006913"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">nuclear import</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The directed movement of substances
into the nucleus.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">nuclear import</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016043">
- <rdfs:label xml:lang="en">cellular component organization</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">cellular component
organization</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">A process that is carried out at the
cellular level which results in the assembly, arrangement of constituent
parts, or disassembly of a cellular component.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016301">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016772"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">kinase activity</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Catalysis of the transfer of a
phosphate group, usually from ATP, to a substrate
molecule.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">kinase activity</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0030506">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008092"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">ankyrin binding</obi:IAO_0000111>
- <rdfs:label xml:lang="en">ankyrin binding</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with ankyrin, a 200 kDa cytoskeletal protein that attaches
other cytoskeletal proteins to integral membrane proteins.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065005">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065003"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">protein-lipid complex
assembly</obi:IAO_0000111>
- <rdfs:label xml:lang="en">protein-lipid complex assembly</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of proteins and lipids to form a protein-lipid
complex.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005769">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005768"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Small irregularly shaped intracellular
vesicles to which endocytosed molecules are initially
delivered.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">early endosome</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">early endosome</obi:IAO_0000111>
- </owl:Class>
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:span="http://www.ifomis.org/bfo/1.1/span#"
+ xml:base="http://purl.obolibrary.org/obo/obi/externalDerived.owl">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/obi/externalDerived.owl"/>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005575">
- <obi:IAO_0000111 xml:lang="en">cellular_component</obi:IAO_0000111>
<obi:IAO_0000115 xml:lang="en">The part of a cell or its extracellular
environment in which a gene product is located. A gene product may be
located in one or more parts of a cell and its location may be as specific
as a particular macromolecular complex, that is, a stable, persistent
association of macromolecules that function together.</obi:IAO_0000115>
<rdfs:label xml:lang="en">cellular_component</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016070">
- <obi:IAO_0000115 xml:lang="en">The cellular chemical reactions and
pathways involving RNA, ribonucleic acid, one of the two main type of
nucleic acid, consisting of a long, unbranched macromolecule formed from
ribonucleotides joined in 3',5'-phosphodiester linkage.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">RNA metabolic process</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044260"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090304"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">RNA metabolic process</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051099">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044093"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that activates or increases
the rate or extent of binding, the selective interaction of a molecule with
one or more specific sites on another molecule.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">positive regulation of binding</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051098"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">positive regulation of
binding</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043388">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051101"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0051099"/>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Any process that increases the
frequency, rate or extent of DNA binding. DNA binding is any process by
which a gene product interacts selectively with DNA (deoxyribonucleic
acid).</obi:IAO_0000115>
- <rdfs:label xml:lang="en">positive regulation of DNA
binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">positive regulation of DNA
binding</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051234">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">establishment of
localization</obi:IAO_0000111>
- <rdfs:label xml:lang="en">establishment of localization</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The directed movement of a cell,
substance or cellular entity, such as a protein complex or organelle, to a
specific location.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0055131">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">C3HC4-type RING finger domain
binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">C3HC4-type RING finger domain
binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a C3HC4-type zinc finger domain of a protein. The
C3HC4-type zinc finger is a variant of RING finger, is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc ions, and has the
consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C,
where X is any amino acid. Many proteins containing a C3HC4-type RING
finger play a key role in the ubiquitination pathway.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0018107">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0018210"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006468"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The posttranslational phosphorylation
of peptidyl-threonine to form
peptidyl-O-phospho-L-threonine.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">peptidyl-threonine
phosphorylation</obi:IAO_0000111>
- <rdfs:label xml:lang="en">peptidyl-threonine
phosphorylation</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019783">
- <obi:IAO_0000115 xml:lang="en">Catalysis of the hydrolysis of peptide
or isopeptide bonds within small proteins such as ubiquitin or
ubiquitin-like proteins (e.g. APG8, ISG15, NEDD8, SUMO), or between the
small protein and a larger protein to which it has been
conjugated.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">small conjugating protein-specific protease
activity</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">small conjugating protein-specific
protease activity</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008234"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090046">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050789"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">regulation of transcription regulator
activity</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">regulation of transcription regulator
activity</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of transcription regulator activity, any
molecular function that plays a role in regulating transcription; may bind
a promoter or enhancer DNA sequence or interact with a DNA-binding
transcription factor.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065009"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065003">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043933"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of a set of macromolecules to form a
complex.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022607"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">macromolecular complex assembly</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">macromolecular complex
assembly</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006898">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006897"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">receptor-mediated endocytosis</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The uptake of external materials by
cells, utilizing receptors to ensure specificity of transport. A specific
receptor on the cell surface binds tightly to the extracellular
macromolecule (the ligand) that it recognizes; the plasma-membrane region
containing the receptor-ligand complex then undergoes endocytosis, forming
a transport vesicle containing the receptor-ligand complex and excluding
most other plasma-membrane proteins. Receptor-mediated endocytosis
generally occurs via clathrin-coated pits and vesicles.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">receptor-mediated
endocytosis</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006606">
- <rdfs:label xml:lang="en">protein import into nucleus</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The directed movement of a protein from
the cytoplasm to the nucleus.</obi:IAO_0000115>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0017038"/>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">protein import into
nucleus</obi:IAO_0000111>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0051170"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006605"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043130">
- <obi:IAO_0000111 xml:lang="en">ubiquitin binding</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently and non-covalently with ubiquitin, a protein that when
covalently bound to other cellular proteins marks them for proteolytic
degradation.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">ubiquitin binding</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032182"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051092">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051091"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Any process that activates or increases
the frequency, rate or extent of activity of the transcription factor
NF-kappaB.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">positive regulation of NF-kappaB
transcription factor activity</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">positive regulation of NF-kappaB
transcription factor activity</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045185">
- <rdfs:label xml:lang="en">maintenance of protein location</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process by which a protein is
maintained in a location and prevented from moving elsewhere. These include
sequestration, stabilization to prevent transport elsewhere and the active
retrieval of proteins that do move away.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">maintenance of protein
location</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051235"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032387">
- <obi:IAO_0000111 xml:lang="en">negative regulation of intracellular
transport</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032386"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051051"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">negative regulation of intracellular
transport</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that stops, prevents, or
reduces the frequency, rate or extent of the directed movement of
substances within cells.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0080090">
- <obi:IAO_0000111 xml:lang="en">regulation of primary metabolic
process</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the chemical reactions and pathways within a
cell or an organism involving those compounds formed as a part of the
normal anabolic and catabolic processes. These processes take place in
most, if not all, cells of the organism.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019222"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">regulation of primary metabolic
process</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0007252">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006468"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The process of introducing a phosphate
group into an I-kappaB protein.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">I-kappaB phosphorylation</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">I-kappaB
phosphorylation</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032774">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044249"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">RNA biosynthetic
process</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
resulting in the formation of RNA, ribonucleic acid, one of the two main
type of nucleic acid, consisting of a long, unbranched macromolecule formed
from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes
polymerization of ribonucleotide monomers.</obi:IAO_0000115>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0016070"/>
- <rdfs:label xml:lang="en">RNA biosynthetic process</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044444">
- <rdfs:label xml:lang="en">cytoplasmic part</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044424"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Any constituent part of the cytoplasm,
all of the contents of a cell excluding the plasma membrane and nucleus,
but including other subcellular structures.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">cytoplasmic part</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071571">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006461"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">A process of protein complex assembly
in which the arrangement and bonding together of the set of components that
form the protein complex is mediated by an LRR (leucine-rich repeat) domain
interaction.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">LRR domain-mediated complex
assembly</obi:IAO_0000111>
- <rdfs:label xml:lang="en">LRR domain-mediated complex
assembly</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031371">
- <rdfs:label xml:lang="en">ubiquitin conjugating enzyme
complex</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044424"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any complex that possesses ubiquitin
conjugating enzyme activity.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">ubiquitin conjugating enzyme
complex</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051603">
- <obi:IAO_0000111 xml:lang="en">proteolysis involved in cellular
protein catabolic process</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006508"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">proteolysis involved in cellular protein
catabolic process</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The hydrolysis of a peptide bond or
bonds within a protein as part of the chemical reactions and pathways
resulting in the breakdown of a protein by individual
cells.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002376">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">immune system process</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process involved in the development
or functioning of the immune system, an organismal system for calibrated
responses to potential internal or invasive threats.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">immune system process</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051169">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046907"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">The directed movement of substances
into, out of, or within the nucleus.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">nuclear transport</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">nuclear transport</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006511">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019941"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">ubiquitin-dependent protein catabolic
process</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
resulting in the breakdown of a protein or peptide by hydrolysis of its
peptide bonds, initiated by the covalent attachment of a ubiquitin moiety,
or multiple ubiquitin moieties, to the protein.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">ubiquitin-dependent protein catabolic
process</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002221">
- <obi:IAO_0000115 xml:lang="en">Any series of molecular signals
generated as a consequence of binding to a cell surface or intracellular
pattern recognition receptor (PRR). Such receptors bind for molecular
patterns based on a repeating or polymeric structures, like those of
polysaccharides or peptidoglycans, which are sometimes associated with
potential pathogens.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">pattern recognition receptor signaling
pathway</obi:IAO_0000111>
- <rdfs:label xml:lang="en">pattern recognition receptor signaling
pathway</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002758"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0010324">
- <obi:IAO_0000111 xml:lang="en">membrane invagination</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">membrane invagination</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The infolding of a membrane, resulting
in formation of a vesicle.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016044"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003676">
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any nucleic acid.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005488"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">nucleic acid binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">nucleic acid binding</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034142">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002224"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">toll-like receptor 4 signaling
pathway</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any series of molecular signals
generated as a consequence of binding to toll-like receptor
4.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">toll-like receptor 4 signaling
pathway</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051239">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">regulation of multicellular organismal
process</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050789"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">regulation of multicellular organismal
process</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of a multicellular organismal process, the
processes pertinent to the function of a multicellular organism above the
cellular level; includes the integrated processes of tissues and
organs.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032984">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043933"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022411"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">The disaggregation of a macromolecular
complex into its constituent components.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">macromolecular complex
disassembly</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">macromolecular complex
disassembly</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090316">
- <obi:IAO_0000111 xml:lang="en">positive regulation of intracellular
protein transport</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051222"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that decreases the
frequency, rate or extent of the directed movement of proteins within
cells.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">positive regulation of intracellular protein
transport</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0033157"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032388"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0033157">
- <rdfs:label xml:lang="en">regulation of intracellular protein
transport</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051223"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">regulation of intracellular protein
transport</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032386"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the directed movement of proteins within
cells.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006508">
- <obi:IAO_0000111 xml:lang="en">proteolysis</obi:IAO_0000111>
- <rdfs:label xml:lang="en">proteolysis</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019538"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
resulting in the breakdown of a protein by the destruction of the native,
active configuration, with the hydrolysis of peptide
bonds.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006796">
- <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
involving the phosphate group, the anion or salt of any phosphoric
acid.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006793"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">phosphate metabolic
process</obi:IAO_0000111>
- <rdfs:label xml:lang="en">phosphate metabolic process</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045088">
- <obi:IAO_0000111 xml:lang="en">regulation of innate immune
response</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031347"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050776"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">regulation of innate immune
response</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the innate immune response, the organism's
first line of defense against infection.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005515">
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any protein or protein complex (a complex of two or
more proteins that may include other nonprotein
molecules).</obi:IAO_0000115>
- <rdfs:label xml:lang="en">protein binding</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005488"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">protein binding</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042035">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0010556"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">regulation of cytokine biosynthetic
process</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">regulation of cytokine biosynthetic
process</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031326"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the chemical reactions and pathways resulting
in the formation of cytokines.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0001817"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046822">
- <rdfs:label xml:lang="en">regulation of nucleocytoplasmic
transport</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">regulation of nucleocytoplasmic
transport</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032386"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the directed movement of substances between
the nucleus and the cytoplasm.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008092">
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0005515"/>
- <obi:IAO_0000111 xml:lang="en">cytoskeletal protein
binding</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">cytoskeletal protein binding</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any protein component of any cytoskeleton (actin,
microtubule, or intermediate filament cytoskeleton).</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031593">
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0043130"/>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">polyubiquitin binding</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently and non-covalently with a polymer of
ubiqutin.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">polyubiquitin binding</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0004871">
- <obi:IAO_0000111 xml:lang="en">signal transducer
activity</obi:IAO_0000111>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0060089"/>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Mediates the transfer of a signal from
the outside to the inside of a cell by means other than the introduction of
the signal molecule itself into the cell.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">signal transducer activity</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044464">
- <rdfs:label xml:lang="en">cell part</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any constituent part of a cell, the
basic structural and functional unit of all organisms.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0005575"/>
- <obi:IAO_0000111 xml:lang="en">cell part</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008139">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005048"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">nuclear localization sequence
binding</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a nuclear localization sequence, a specific peptide
sequence that acts as a signal to localize the protein within the
nucleus.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">nuclear localization sequence
binding</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0015031">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006810"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045184"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">protein transport</obi:IAO_0000111>
- <rdfs:label xml:lang="en">protein transport</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The directed movement of proteins into,
out of, within or between cells by means of some external agent such as a
transporter or pore.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008234">
- <obi:IAO_0000111 xml:lang="en">cysteine-type peptidase
activity</obi:IAO_0000111>
- <rdfs:label xml:lang="en">cysteine-type peptidase activity</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Catalysis of the hydrolysis of peptide
bonds in a polypeptide chain by a mechanism in which the sulfhydryl group
of a cysteine residue at the active center acts as a
nucleophile.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070011"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071550">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006461"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">death domain-mediated complex
assembly</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">A process of protein complex assembly
in which the arrangement and bonding together of the set of components that
form the protein complex is mediated by a death domain (DD)
interaction.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">death domain-mediated complex
assembly</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0001530">
- <rdfs:label xml:lang="en">lipopolysaccharide binding</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with lipopolysaccharide.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">lipopolysaccharide
binding</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005488"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0000209">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016567"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">protein polyubiquitination</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Addition of multiple ubiquitin moieties
to a protein, forming a ubiquitin chain.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">protein
polyubiquitination</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090304">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">nucleic acid metabolic process</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">nucleic acid metabolic
process</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006139"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any cellular metabolic process
involving nucleic acids.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002764">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050776"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The cascade of processes by which a
signal interacts with a receptor, causing a change in the level or activity
of a second messenger or other downstream target, and ultimately leading to
the activation, perpetuation, or inhibition of an immune
response.</obi:IAO_0000115>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0023033"/>
- <obi:IAO_0000111 xml:lang="en">immune response-regulating signaling
pathway</obi:IAO_0000111>
- <rdfs:label xml:lang="en">immune response-regulating signaling
pathway</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070201">
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the directed movement of a protein to a
specific location.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">regulation of establishment of protein
localization</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032880"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">regulation of establishment of protein
localization</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006351">
- <obi:IAO_0000115 xml:lang="en">The cellular synthesis of RNA on a
template of DNA.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">transcription,
DNA-dependent</obi:IAO_0000111>
- <rdfs:label xml:lang="en">transcription, DNA-dependent</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0032774"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006350"/>
- </rdfs:subClassOf>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0004842">
- <rdfs:label xml:lang="en">ubiquitin-protein ligase
activity</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019787"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Catalysis of the reaction: ATP +
ubiquitin + protein lysine = AMP + diphosphate + protein
N-ubiquityllysine.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">ubiquitin-protein ligase
activity</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006350">
- <obi:IAO_0000111 xml:lang="en">transcription</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034645"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0090304"/>
- <rdfs:label xml:lang="en">transcription</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The cellular synthesis of either RNA on
a template of DNA or DNA on a template of RNA.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006807">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008152"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
involving various organic and inorganic nitrogenous compounds; includes
nitrogen fixation, nitrification, denitrification,
assimilatory/dissimilatory nitrate reduction and the interconversion of
nitrogenous organic matter and ammonium.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">nitrogen compound metabolic
process</obi:IAO_0000111>
- <rdfs:label xml:lang="en">nitrogen compound metabolic
process</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0010648">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048523"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0010646"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">negative regulation of cell
communication</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that decreases the
frequency, rate or extent of cell communication. Cell communication is the
process that mediates interactions between a cell and its surroundings.
Encompasses interactions such as signaling or attachment between one cell
and another cell, between a cell and an extracellular matrix, or between a
cell and any other aspect of its environment.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">negative regulation of cell
communication</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046907">
- <obi:IAO_0000111 xml:lang="en">intracellular
transport</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">The directed movement of substances
within a cell.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051649"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006810"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">intracellular transport</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006886">
- <obi:IAO_0000115 xml:lang="en">The directed movement of proteins in a
cell, including the movement of proteins between specific compartments or
structures within a cell, such as organelles of a eukaryotic
cell.</obi:IAO_0000115>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0046907"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0015031"/>
- <rdfs:label xml:lang="en">intracellular protein transport</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">intracellular protein
transport</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043235">
- <obi:IAO_0000111 xml:lang="en">receptor complex</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
- </rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Any protein complex that undergoes
combination with a hormone, neurotransmitter, drug or intracellular
messenger to initiate a change in cell function.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">receptor complex</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002684">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048518"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0002682"/>
- <obi:IAO_0000115 xml:lang="en">Any process that activates or increases
the frequency, rate, or extent of an immune system
process.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">positive regulation of immune system
process</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">positive regulation of immune system
process</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0030528">
- <obi:IAO_0000111 xml:lang="en">transcription regulator
activity</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003674"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">transcription regulator activity</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Plays a role in regulating
transcription; may bind a promoter or enhancer DNA sequence or interact
with a DNA-binding transcription factor.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044249">
- <obi:IAO_0000111 xml:lang="en">cellular biosynthetic
process</obi:IAO_0000111>
- <rdfs:label xml:lang="en">cellular biosynthetic process</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0044237"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009058"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
resulting in the formation of substances, carried out by individual
cells.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065007">
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of any biological process, quality or
function.</obi:IAO_0000115>
***The diff for this file has been truncated for email.***
=======================================
---
/trunk/src/ontology/immunology/proto/LPS-recognition-and-signaling-via-TLR4-pathway-external.owl
Thu Oct 21 10:38:40 2010
+++
/trunk/src/ontology/immunology/proto/LPS-recognition-and-signaling-via-TLR4-pathway-external.owl
Wed Mar 14 10:27:26 2012
@@ -1,2713 +1,10 @@
<?xml version="1.0"?>
-<rdf:RDF
xmlns="http://purl.obolibrary.org/obo/ido/dev/LPS-recognition-and-signaling-via-TLR4-pathway-external.owl#"
-
xml:base="http://purl.obolibrary.org/obo/ido/dev/LPS-recognition-and-signaling-via-TLR4-pathway-external.owl"
- xmlns:obo="http://purl.obolibrary.org/obo/"
- xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
- xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
-
xmlns:submitted_rlps2-tm="http://purl.org/obo/owl/PRO#submitted_rlps2-tm+"
- xmlns:PRO="http://purl.org/obo/owl/PRO#"
- xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:SO="http://purl.org/obo/owl/SO#"
- xmlns:PATO="http://purl.org/obo/owl/PATO#"
+<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
+ xml:base="http://www.w3.org/2002/07/owl"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
- xmlns:span="http://www.ifomis.org/bfo/1.1/span#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:GO="http://purl.org/obo/owl/GO#">
- <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/dev/LPS-recognition-and-signaling-via-TLR4-pathway-external.owl">
- <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/ontology-metadata.owl"/>
- </owl:Ontology>
-
-
-
- 
-
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
- <rdf:Description
rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
-
-
-
- 
-
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_16412">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
- <obo:IAO_0000116>handle lps from row 5 of parsed-handle-block in
sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/CHEBI"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_18348">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
- <obo:IAO_0000116>handle pip2 from row 12 of parsed-handle-block in
sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/CHEBI"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/CHEBI"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_29967">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
- <obo:IAO_0000116>handle K from row 15 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/CHEBI"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_30013">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
- <obo:IAO_0000116>handle Thr from row 18 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/CHEBI"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_9160">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
- <obo:IAO_0000116>handle ssDNA from row 23 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/CHEBI"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0000060">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle pint from row 46 of parsed-handle-block in
sheet TLR403 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0000209">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle ppub from row 93 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0001875">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle lpsbf from row 33 of parsed-handle-block
in sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002755">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle 88dp from row 35 of parsed-handle-block in
sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002756">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle 88idp from row 37 of parsed-handle-block
in sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003674">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Function"/>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003700">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle tf from row 79 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003704">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle RPIITFAEB from row 77 of
parsed-handle-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0004842">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle E3l from row 113 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000116>handle udpla from row 104 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0004843">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle ubspa from row 24 of parsed-handle-block
in sheet TLR406 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005575">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005634">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0005575"/>
- <obo:IAO_0000116>handle nuc from row 68 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005737">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0005575"/>
- <obo:IAO_0000116>handle cyto from row 69 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005769">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0005575"/>
- <obo:IAO_0000116>handle eendos from row 31 of parsed-handle-block
in sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005938">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0005575"/>
- <obo:IAO_0000116>handle pcyto from row 70 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006366">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle TRPIIP from row 101 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006461">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle pca from row 106 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006468">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle pop from row 81 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006511">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle 0.0d0 from row 127 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000116>handle ubdpcp from row 96 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006607">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle NLSsni from row 97 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006898">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle rmend from row 38 of parsed-handle-block
in sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0007252">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle I_KBp from row 83 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0007253">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle csNfkb from row 99 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008139">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle nlsb from row 114 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008385">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0043234"/>
- <obo:IAO_0000116>handle IkbK from row 71 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008588">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle rcskb from row 100 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009299">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle mRNAtranscr from row 45 of
parsed-handle-block in sheet TLR403 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016301">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle Ka from row 108 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016567">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle pubbp from row 95 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000116>handle pub from row 89 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0018107">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle ptp from row 82 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019900">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle Kb from row 107 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle psdb from row 105 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0030139">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0005575"/>
- <obo:IAO_0000116>handle endves from row 30 of parsed-handle-block
in sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0030506">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle ankb from row 115 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0030528">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle Transcrega from row 37 of
parsed-handle-block in sheet TLR403 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031593">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle pubb from row 112 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032991">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/SO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034142">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle tlrp from row 36 of parsed-handle-block in
sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034144">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle nrtlr4sp from row 18 of
parsed-handle-block in sheet TLR406 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034450">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle ububla from row 20 of parsed-handle-block
in sheet TLR405 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0035370">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0043234"/>
- <obo:IAO_0000116>handle Ubc13-Uev1A from row 72 of
parsed-handle-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042035">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle Rcybp from row 102 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042169">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle SH2bd from row 23 of parsed-handle-block
in sheet TLR406 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042803">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle phom from row 34 of parsed-handle-block in
sheet TLR403 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000116>handle phom from row 39 of parsed-handle-block in
sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043130">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle ubb from row 111 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043234">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043241">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle pcd from row 84 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043496">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle phomp from row 41 of parsed-handle-block
in sheet TLR403 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043497">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle phetp from row 42 of parsed-handle-block
in sheet TLR403 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043565">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle ssDb from row 78 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044197">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle rhdb from row 116 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044198">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle trafdb from row 76 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045073">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle Rchbp from row 103 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046696">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0043234"/>
- <obo:IAO_0000116>handle r2 from row 14 of parsed-handle-block in
sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046982">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle phet from row 35 of parsed-handle-block in
sheet TLR403 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051092">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle prNfkbtf from row 98 of
parsed-handle-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0055131">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle RLb from row 117 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065004">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle pDca from row 44 of parsed-handle-block in
sheet TLR403 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065005">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle plca from row 43 of parsed-handle-block in
sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070513">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle ddb from row 74 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070534">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle pk63ub from row 91 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070536">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle pkdub from row 21 of parsed-handle-block
in sheet TLR406 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070628">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle protsb from row 118 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070936">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle pK48ub from row 92 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070975">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle fhab from row 75 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070976">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle tirdb from row 32 of parsed-handle-block
in sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071523">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle tirdp from row 34 of parsed-handle-block
in sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071530">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle Fhabp from row 85 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071531">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle rhdbp from row 88 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071533">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle ankdb from row 87 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071534">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle trafdp from row 86 of parsed-handle-block
in sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071536">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle RLbp from row 90 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071537">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle zfbd from row 94 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071538">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle SH2bdp from row 22 of parsed-handle-block
in sheet TLR406 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071550">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle ddp from row 80 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071551">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle RHIMdb from row 19 of parsed-handle-block
in sheet TLR405 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071552">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle RHIMdp from row 21 of parsed-handle-block
in sheet TLR405 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071571">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle LRRbp from row 42 of parsed-handle-block
in sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_2880558">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle trafdb from row 33 of parsed-handle-block
in sheet TLR403 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class
rdf:about="http://purl.org/obo/owl/GO#submitted_ifnmrnatranscr">
- <rdfs:label>IFN beta mRNA transcription</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle IFNmRNAtranscr from row 38 of
parsed-handle-block in sheet TLR403 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#submitted_isreb">
- <rdfs:label>ISRE binding activity</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle ISREb from row 36 of parsed-handle-block
in sheet TLR403 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#submitted_lbplps">
- <rdfs:label>LBPLPS complex</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0043234"/>
- <obo:IAO_0000116>handle lbplps from row 7 of parsed-handle-block
in sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/PATO#PATO_0000648">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
- <obo:IAO_0000116>handle ob from row 110 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/PATO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/PATO#PATO_0001505">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
- <obo:IAO_0000116>handle sf from row 109 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/PATO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/PRO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/PRO#PRO_000000103">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- <obo:IAO_0000116>handle p38 from row 37 of parsed-handle-block in
sheet TLR402 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000116>handle MAPK1 from row 13 of parsed-handle-block
in sheet TLR404 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/PRO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/PRO#PRO_000000454">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- <obo:IAO_0000116>handle MAPK1p from row 14 of parsed-handle-block
in sheet TLR404 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/PRO"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.org/obo/owl/PRO#PRO_000001155">
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- <obo:IAO_0000116>handle tlr4 from row 10 of parsed-handle-block in
sheet TLR401 from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/PRO"/>
- </owl:Class>
-
***The diff for this file has been truncated for email.***
=======================================
---
/trunk/src/ontology/immunology/proto/LPS-recognition-and-signaling-via-TLR4-pathway.owl
Thu Oct 21 11:08:00 2010
+++
/trunk/src/ontology/immunology/proto/LPS-recognition-and-signaling-via-TLR4-pathway.owl
Wed Mar 14 10:27:26 2012
@@ -1,24 +1,25 @@
<?xml version="1.0"?>
<rdf:RDF
xmlns="http://purl.obolibrary.org/obo/ido/dev/LPS-recognition-and-signaling-via-TLR4-pathway.owl#"

xml:base="http://purl.obolibrary.org/obo/ido/dev/LPS-recognition-and-signaling-via-TLR4-pathway.owl"
- xmlns:obo="http://purl.obolibrary.org/obo/"
- xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
- xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
- xmlns:PRO="http://purl.org/obo/owl/PRO#"
- xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#"
- xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:PATO="http://purl.org/obo/owl/PATO#"
+ xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
+ xmlns:p1="#"
xmlns:SO="http://purl.org/obo/owl/SO#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:GO="http://purl.org/obo/owl/GO#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:GO="http://purl.org/obo/owl/GO#">
+ xmlns:PRO="http://purl.org/obo/owl/PRO#"
+ xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#">
<owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/dev/LPS-recognition-and-signaling-via-TLR4-pathway.owl">
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/ontology-metadata.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/dev/LPS-recognition-and-signaling-via-TLR4-pathway-external-derived.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/dev/LPS-recognition-and-signaling-via-TLR4-pathway-external.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/dev/pathway-defs.owl"/>
- <owl:imports rdf:resource="http://www.ifomis.org/bfo/1.1"/>
+ <owl:imports rdf:resource="http://www.ifomis.org/bfo/1.1#"/>
<owl:imports rdf:resource="http://www.obofoundry.org/ro/ro.owl"/>
</owl:Ontology>

@@ -91,15 +92,15 @@

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011659">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000201">
<rdfs:label>rlps-tmIRK4IRK1 -> rlps-tmIRK4IRK1p in
pcyto</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1"/>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -110,12 +111,6 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006468"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
<owl:allValuesFrom>
<owl:Class>
@@ -155,6 +150,18 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006468"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -171,12 +178,6 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -196,13 +197,25 @@

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011660">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000202">
<rdfs:label>rlps-tmIRK4IRK1p -> rlps-tmIRK4IRK1pp in
pcyto</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1pp"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1p"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -225,6 +238,29 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:allValuesFrom>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1p"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1pp"/>
+ <owl:Class>
+ <owl:complementOf>
+ <owl:Class>
+ <owl:unionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -241,32 +277,46 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1p"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0018107"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1pp"/>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1p"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
+ <obo:IAO_0000116>process rlps-tmIRK4IRK1p->rlps-tmIRK4IRK1pp,
Kb of IRK1p and Ka of IRK1p, ptp located in pcyto, , , from row 134 of
parsed-process-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000203">
+ <rdfs:label>rlps-tmIRK4IRK1pp + tf6 -> rlps-tmIRK4IRK1pptf6 in
pcyto</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0044198"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1p"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000021978"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -279,8 +329,9 @@
<owl:allValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1p"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000002382"/>
<rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1pp"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1pptf6"/>
<owl:Class>
<owl:complementOf>
<owl:Class>
@@ -296,16 +347,12 @@
</owl:allValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000116>process rlps-tmIRK4IRK1p->rlps-tmIRK4IRK1pp,
Kb of IRK1p and Ka of IRK1p, ptp located in pcyto, , , from row 134 of
parsed-process-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011661">
- <rdfs:label>rlps-tmIRK4IRK1pp + tf6 -> rlps-tmIRK4IRK1pptf6 in
pcyto</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
@@ -324,6 +371,12 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0071534"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -346,8 +399,8 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1pptf6"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -356,16 +409,26 @@
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1pp"/>
</owl:Restriction>
</rdfs:subClassOf>
+ <obo:IAO_0000116>process rlps-tmIRK4IRK1pp+tf6->
rlps-tmIRK4IRK1pptf6, trafdb of IRK1pp, trafdp located in pcyto, , , zf-TFD
from row 135 of parsed-process-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000204">
+ <rdfs:label>IRK1pptf6 + pel -> IRK1pptf6pel in cyto</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0044198"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070975"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000021978"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003141"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -374,14 +437,42 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0071530"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1pptf6"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pel"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0071534"/>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003141"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003141"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -390,9 +481,9 @@
<owl:allValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000002382"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1pp"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_rlps-tmirk4irk1pptf6"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000003141"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_irk1pptf6"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pel"/>
<owl:Class>
<owl:complementOf>
<owl:Class>
@@ -408,20 +499,10 @@
</owl:allValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000116>process rlps-tmIRK4IRK1pp+tf6->
rlps-tmIRK4IRK1pptf6, trafdb of IRK1pp, trafdp located in pcyto, , , zf-TFD
from row 135 of parsed-process-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011662">
- <rdfs:label>IRK1pptf6 + pel -> IRK1pptf6pel in cyto</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pel"/>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005737"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -430,26 +511,42 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070975"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003141"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
+ <obo:IAO_0000116>process IRK1pptf6+pel-> IRK1pptf6pel, fhab of
pel, Fhabp located in cyto, , , FHA of pel binds phosphothreonine of IRK1pp
from row 137 of parsed-process-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000205">
+ <rdfs:label>IRK1pptf6pel + TIFA -> IRK1pptf6pelTI in
pcyto</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003141"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pel"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pelti"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003286"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -461,7 +558,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003286"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -471,7 +568,7 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0071530"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0071534"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -483,7 +580,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003141"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pel"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -492,13 +589,19 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
<owl:allValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000003141"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_irk1pptf6"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000003286"/>
<rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pel"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pelti"/>
<owl:Class>
<owl:complementOf>
<owl:Class>
@@ -516,19 +619,29 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005737"/>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0044198"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003286"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000116>process IRK1pptf6+pel-> IRK1pptf6pel, fhab of
pel, Fhabp located in cyto, , , FHA of pel binds phosphothreonine of IRK1pp
from row 137 of parsed-process-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
+ <obo:IAO_0000116>process IRK1pptf6pel+TIFA-> IRK1pptf6pelTI,
trafdb of TIFA, trafdp located in pcyto, , , zf-TFD of TRAF6 binds to traf
binding motif of TIFA from row 138 of parsed-process-block in sheet TLR402
from workbook ido-s4lps-tlr4</obo:IAO_0000116>
</owl:Class>

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011663">
- <rdfs:label>IRK1pptf6pel + TIFA -> IRK1pptf6pelTI in
pcyto</rdfs:label>
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000206">
+ <rdfs:label>IRK1pptf6pelTI + Ubc13-Uev1A + ub ->
IRK1pptf6k63ubpelTI in cyto</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
@@ -536,10 +649,10 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0004842"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pel"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0035370"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -548,14 +661,20 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0070534"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0044198"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003286"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0035370"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -565,48 +684,28 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005737"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:allValuesFrom>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
<owl:Class>
- <owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000003286"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pel"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pelti"/>
- <owl:Class>
- <owl:complementOf>
- <owl:Class>
- <owl:unionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- </owl:unionOf>
- </owl:Class>
- </owl:complementOf>
- </owl:Class>
- </owl:unionOf>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000016963"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
</owl:Class>
- </owl:allValuesFrom>
+ </owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003286"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pel"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pelti"/>
</owl:Restriction>
</rdfs:subClassOf>
@@ -616,10 +715,10 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043130"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003286"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002382"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -628,20 +727,10 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0071534"/>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6k63ubpelti"/>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000116>process IRK1pptf6pel+TIFA-> IRK1pptf6pelTI,
trafdb of TIFA, trafdp located in pcyto, , , zf-TFD of TRAF6 binds to traf
binding motif of TIFA from row 138 of parsed-process-block in sheet TLR402
from workbook ido-s4lps-tlr4</obo:IAO_0000116>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011664">
- <rdfs:label>IRK1pptf6pelTI + Ubc13-Uev1A + ub ->
IRK1pptf6k63ubpelTI in cyto</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
@@ -669,24 +758,6 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6k63ubpelti"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005737"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0070534"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -694,7 +765,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0035370"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pelti"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -704,45 +775,53 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pelti"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0035370"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043130"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002382"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000016963"/>
</owl:Restriction>
</rdfs:subClassOf>
+ <obo:IAO_0000116>process IRK1pptf6pelTI + Ubc13-Uev1A+ub->
IRK1pptf6k63ubpelTI, ubb of TF6 and udpla of Ubc13-Uev1A, pk63ub located in
cyto, , , Ring domain of TF6 binds K63 of ubiquitin from row 139 of
parsed-process-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000207">
+ <rdfs:label>IRK1pptf6k63ubpelTI + ub -> IRK1pptf6pubpelTI in
cyto</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0035370"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6k63ubpelti"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:allValuesFrom>
<owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0004842"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0035370"/>
- </owl:Restriction>
- </owl:intersectionOf>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000016963"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_irk1pptf6k63ubpelti"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pubpelti"/>
+ <owl:Class>
+ <owl:complementOf>
+ <owl:Class>
+ <owl:unionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:unionOf>
</owl:Class>
- </owl:someValuesFrom>
+ </owl:allValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -754,7 +833,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pelti"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000016963"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -763,12 +842,6 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000016963"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -776,27 +849,17 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000016963"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6k63ubpelti"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000116>process IRK1pptf6pelTI + Ubc13-Uev1A+ub->
IRK1pptf6k63ubpelTI, ubb of TF6 and udpla of Ubc13-Uev1A, pk63ub located in
cyto, , , Ring domain of TF6 binds K63 of ubiquitin from row 139 of
parsed-process-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011665">
- <rdfs:label>IRK1pptf6k63ubpelTI + ub -> IRK1pptf6pubpelTI in
cyto</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6k63ubpelti"/>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005737"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -817,10 +880,10 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0031593"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000016963"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002382"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -829,82 +892,50 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005737"/>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000016963"/>
</owl:Restriction>
</rdfs:subClassOf>
+ <obo:IAO_0000116>process IRK1pptf6k63ubpelTI+ub->
IRK1pptf6pubpelTI, pubb of TF6, ppub located in cyto, , , from row 140 of
parsed-process-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000208">
+ <rdfs:label>IRK1pptf6pubpelTI -> IRK1pptf6pubpel + TIFA in
cyto</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000016963"/>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0043241"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6k63ubpelti"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pubpel"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003286"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:allValuesFrom>
- <owl:Class>
- <owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000016963"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_irk1pptf6k63ubpelti"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pubpelti"/>
- <owl:Class>
- <owl:complementOf>
- <owl:Class>
- <owl:unionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- </owl:unionOf>
- </owl:Class>
- </owl:complementOf>
- </owl:Class>
- </owl:unionOf>
- </owl:Class>
- </owl:allValuesFrom>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pubpelti"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0031593"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002382"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005737"/>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000116>process IRK1pptf6k63ubpelTI+ub->
IRK1pptf6pubpelTI, pubb of TF6, ppub located in cyto, , , from row 140 of
parsed-process-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011666">
- <rdfs:label>IRK1pptf6pubpelTI -> IRK1pptf6pubpel + TIFA in
cyto</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
@@ -931,24 +962,6 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pubpel"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005737"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pubpelti"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -963,32 +976,20 @@
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0043241"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003286"/>
- </owl:Restriction>
- </rdfs:subClassOf>
<obo:IAO_0000116>process IRK1pptf6pubpelTI->
IRK1pptf6pubpel+TIFA, , pcd located in cyto, , , from row 141 of
parsed-process-block in sheet TLR402 from workbook
ido-s4lps-tlr4</obo:IAO_0000116>
</owl:Class>

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011667">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000209">
<rdfs:label>IRK1pptf6pubpel -> IRK1pptf6pubpelp in
cyto</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_irk1pptf6pubpelp"/>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005737"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
***The diff for this file has been truncated for email.***
=======================================
---
/trunk/src/ontology/immunology/proto/TLR2-Lta-signaling-pathway-external-derived.owl
Thu Oct 21 11:08:00 2010
+++
/trunk/src/ontology/immunology/proto/TLR2-Lta-signaling-pathway-external-derived.owl
Wed Mar 14 10:27:26 2012
@@ -1,1841 +1,1999 @@
<?xml version="1.0"?>
<rdf:RDF
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:obi="http://purl.obolibrary.org/obo/"

xmlns:protege-dc="http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl#"
+ xmlns:ncbitax="http://purl.org/obo/owl/NCBITaxon#"
+ xmlns:daml="http://www.daml.org/2001/03/daml+oil#"
+ xmlns:obi_rel="http://purl.obolibrary.org/obo/obi/Relations.owl#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:obi_func="http://purl.obolibrary.org/obo/obi/OBI-Function.owl#"

xmlns:obi_owlfull="http://purl.obolibrary.org/obo/obi/obi-owl-full.owl#"
- xmlns:pato="http://purl.org/obo/owl/PATO#"
-
xmlns:obi_plan="http://purl.obolibrary.org/obo/obi/PlanAndPlannedProcess.owl#"
- xmlns:pro="http://purl.org/obo/owl/PRO#"
-
xmlns:obi_extd="http://purl.obolibrary.org/obo/obi/externalDerived.owl#"
-
xmlns:obi_annot="http://purl.obolibrary.org/obo/obi/AnnotationProperty.owl#"
- xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
- xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:obi_biomat="http://purl.obolibrary.org/obo/obi/Biomaterial.owl#"
+ xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:rotoo="http://purl.org/obo/owl/ro#"
- xmlns:dc="http://purl.org/dc/elements/1.1/"
- xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
- xmlns:go="http://purl.org/obo/owl/GO#"
- xmlns:obi_quality="http://purl.obolibrary.org/obo/obi/Quality.owl#"
- xmlns:bfo="http://www.ifomis.org/bfo/1.1#"
- xmlns:robfo="http://purl.org/obo/owl/ro_bfo_bridge/1.1#"
- xmlns:envo="http://purl.org/obo/owl/ENVO#"
- xmlns:owl="http://www.w3.org/2002/07/owl#"
- xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:obi_ext="http://purl.obolibrary.org/obo/obi/external.owl#"
- xmlns:ncbitax="http://purl.org/obo/owl/NCBITaxon#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+ xmlns:bfo="http://www.ifomis.org/bfo/1.1#"
+
xmlns:obi_annot="http://purl.obolibrary.org/obo/obi/AnnotationProperty.owl#"
+
xmlns:obi_plan="http://purl.obolibrary.org/obo/obi/PlanAndPlannedProcess.owl#"
+ xmlns:pato="http://purl.org/obo/owl/PATO#"
+ xmlns:cell="http://purl.org/obo/owl/CL#"
+
xmlns:obi_extd="http://purl.obolibrary.org/obo/obi/externalDerived.owl#"
+ xmlns:obi_role="http://purl.obolibrary.org/obo/obi/Role.owl#"

xmlns:obi_instr="http://purl.obolibrary.org/obo/obi/InstrumentAndPart.owl#"
- xmlns:obi_rel="http://purl.obolibrary.org/obo/obi/Relations.owl#"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:envo="http://purl.org/obo/owl/ENVO#"
+ xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
xmlns:caro="http://purl.org/obo/owl/CARO#"
- xmlns:so="http://purl.org/obo/owl/SO#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
- xmlns:cell="http://purl.org/obo/owl/CL#"
- xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+ xmlns:robfo="http://purl.org/obo/owl/ro_bfo_bridge/1.1#"
+ xmlns:obi_quality="http://purl.obolibrary.org/obo/obi/Quality.owl#"
+ xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
+ xmlns:rotoo="http://purl.org/obo/owl/ro#"
+ xmlns:pro="http://purl.org/obo/owl/PRO#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"

xmlns:obi_denrie="http://purl.obolibrary.org/obo/obi/DigitalEntityPlus.owl#"
- xmlns:obi_func="http://purl.obolibrary.org/obo/obi/OBI-Function.owl#"
- xmlns:obi_role="http://purl.obolibrary.org/obo/obi/Role.owl#"
- xmlns:obi="http://purl.obolibrary.org/obo/"
- xmlns:span="http://www.ifomis.org/bfo/1.1/span#"
- xmlns:daml="http://www.daml.org/2001/03/daml+oil#"
+ xmlns:so="http://purl.org/obo/owl/SO#"
+ xmlns:go="http://purl.org/obo/owl/GO#"
xmlns:chebi="http://purl.org/obo/owl/CHEBI#"
-
xml:base="http://purl.obolibrary.org/obo/ido/dev/TLR2-Lta-signaling-pathway-external-derived.owl">
- <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/dev/TLR2-Lta-signaling-pathway-external-derived.owl"/>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043226">
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:span="http://www.ifomis.org/bfo/1.1/span#"
+ xml:base="http://purl.obolibrary.org/obo/obi/externalDerived.owl">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/obi/externalDerived.owl"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046823">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">organelle</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Any process that stops, prevents, or
reduces the frequency, rate or extent of the directed movement of
substances between the cytoplasm and the nucleus.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">negative regulation of nucleocytoplasmic
transport</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005575"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046822"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">organelle</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Organized structure of distinctive
morphology and function. Includes the nucleus, mitochondria, plastids,
vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic
structures such as anammoxosomes and pirellulosomes. Excludes the plasma
membrane.</obi:IAO_0000115>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032387"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000111 xml:lang="en">negative regulation of
nucleocytoplasmic transport</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071530">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034645">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006461"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044249"/>
</rdfs:subClassOf>
+ <obi:IAO_0000111 xml:lang="en">cellular macromolecule biosynthetic
process</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">cellular macromolecule biosynthetic
process</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
resulting in the formation of a macromolecule, any molecule of high
relative molecular mass, the structure of which essentially comprises the
multiple repetition of units derived, actually or conceptually, from
molecules of low relative molecular mass, carried out by individual
cells.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">FHA domain-mediated complex
assembly</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">A process of protein complex assembly
in which the arrangement and bonding together of the set of components that
form the protein complex is mediated by an FHA (forkhead-associated) domain
interaction.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">FHA domain-mediated complex
assembly</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009059"/>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044260"/>
+ </rdfs:subClassOf>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048518">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0035354">
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044459"/>
+ </rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">positive regulation of biological
process</obi:IAO_0000111>
- <rdfs:label xml:lang="en">positive regulation of biological
process</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050789"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that activates or increases
the frequency, rate or extent of a biological process. Biological processes
are regulated by many means; examples include the control of gene
expression, protein modification or interaction with a protein or substrate
molecule.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">Toll-like receptor 1-Toll-like receptor 2
protein complex</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">A heterodimeric protein complex
containing Toll-like receptor 1 (TLR1) and Toll-like receptor 2
(TLR2).</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">Toll-like receptor 1-Toll-like receptor
2 protein complex</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016874">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016740">
+ <obi:IAO_0000111 xml:lang="en">transferase activity</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">transferase activity</rdfs:label>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003824"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Catalysis of the ligation of two
substances with concomitant breaking of a diphosphate linkage, usually in a
nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC
class 6.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">ligase activity</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Catalysis of the transfer of a group,
e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or
other groups, from one compound (generally regarded as the donor) to
another compound (generally regarded as the acceptor). Transferase is the
systematic name for any enzyme of EC class 2.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070201">
+ <rdfs:label xml:lang="en">regulation of establishment of protein
localization</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032880"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the directed movement of a protein to a
specific location.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">ligase activity</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">regulation of establishment of protein
localization</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032507">
- <obi:IAO_0000111 xml:lang="en">maintenance of protein location in
cell</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003676">
+ <rdfs:label xml:lang="en">nucleic acid binding</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any nucleic acid.</obi:IAO_0000115>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005488"/>
+ </rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">maintenance of protein location in
cell</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">nucleic acid binding</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0001067">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0003676"/>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a nucleic acid region that regulates a nucleic
acid-based process. Such processes include transcription, DNA replication,
and DNA repair.</obi:IAO_0000115>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">regulatory region nucleic acid
binding</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">regulatory region nucleic acid
binding</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051050">
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">positive regulation of
transport</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">positive regulation of transport</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051651"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048518"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process by which a protein is
maintained in a specific location within, or in the membrane of, a cell,
and is prevented from moving elsewhere.</obi:IAO_0000115>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045185"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051049"/>
</rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">Any process that activates or increases
the frequency, rate or extent of the directed movement of substances (such
as macromolecules, small molecules, ions) into, out of or within a cell, or
between cells, by means of some agent such as a transporter or
pore.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042990">
- <obi:IAO_0000111 xml:lang="en">regulation of transcription factor
import into nucleus</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the movement of a transcription factor from
the cytoplasm to the nucleus.</obi:IAO_0000115>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006350">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0034645"/>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">The cellular synthesis of either RNA on
a template of DNA or DNA on a template of RNA.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">transcription</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042306"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090304"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">regulation of transcription factor import
into nucleus</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">transcription</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046822">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032386"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the directed movement of substances between
the nucleus and the cytoplasm.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">regulation of nucleocytoplasmic
transport</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">regulation of nucleocytoplasmic
transport</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043412">
- <rdfs:label xml:lang="en">macromolecule modification</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006461">
+ <obi:IAO_0000111 xml:lang="en">protein complex
assembly</obi:IAO_0000111>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The covalent alteration of one or more
monomeric units in a polypeptide, polynucleotide, polysaccharide, or other
biological macromolecule, resulting in a change in its
properties.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">protein complex assembly</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043170"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071822"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">macromolecule
modification</obi:IAO_0000111>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065003"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of a set of components to form a protein
complex.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016881">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071533">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">acid-amino acid ligase
activity</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Catalysis of the ligation of an acid to
an amino acid via a carbon-nitrogen bond with concomitant breakage of a
diphosphate linkage, usually in a nucleoside triphosphate.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">acid-amino acid ligase activity</rdfs:label>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0006461"/>
+ <obi:IAO_0000111 xml:lang="en">ankyrin repeat-mediated complex
assembly</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">A process of protein complex assembly
in which the arrangement and bonding together of the set of components that
form the protein complex is mediated by an ankyrin repeat
interaction.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">ankyrin repeat-mediated complex
assembly</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006139">
+ <obi:IAO_0000111 xml:lang="en">nucleobase, nucleoside, nucleotide and
nucleic acid metabolic process</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016879"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034641"/>
</rdfs:subClassOf>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">nucleobase, nucleoside, nucleotide and
nucleic acid metabolic process</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Any cellular metabolic process
involving nucleobases, nucleosides, nucleotides and nucleic
acids.</obi:IAO_0000115>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044238"/>
+ </rdfs:subClassOf>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044265">
- <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
resulting in the breakdown of a macromolecule, any large molecule including
proteins, nucleic acids and carbohydrates, as carried out by individual
cells.</obi:IAO_0000115>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003677">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0003676"/>
+ <obi:IAO_0000115 xml:lang="en">Any molecular function by which a gene
product interacts selectively with DNA (deoxyribonucleic
acid).</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">DNA binding</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">DNA binding</rdfs:label>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0035355">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044248"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044459"/>
</rdfs:subClassOf>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044260"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">cellular macromolecule catabolic
process</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">Toll-like receptor 2-Toll-like receptor
6 protein complex</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">Toll-like receptor 2-Toll-like receptor 6
protein complex</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">A heterodimeric protein complex
containing Toll-like receptor 2 (TLR2) and Toll-like receptor 6
(TLR6).</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051220">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009057"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032507"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">cellular macromolecule catabolic
process</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">cytoplasmic sequestering of
protein</rdfs:label>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">The selective interaction of a protein
with specific molecules in the cytoplasm, thereby inhibiting its transport
into other areas of the cell.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">cytoplasmic sequestering of
protein</obi:IAO_0000111>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051224"/>
+ </rdfs:subClassOf>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008588">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0000981">
+ <obi:IAO_0000111 xml:lang="en">sequence-specific DNA binding RNA
polymerase II transcription factor activity</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042346"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003700"/>
</rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a specific DNA sequence in order to modulate
transcription by RNA polymerase II. The transcription factor may or may not
also interact selectively with a protein or macromolecular
complex.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The release of NF-kappaB from specific
molecules in the cytoplasm to which it was bound, thereby allowing its
translocation into the nucleus.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">release of cytoplasmic sequestered
NF-kappaB</obi:IAO_0000111>
- <rdfs:label xml:lang="en">release of cytoplasmic sequestered
NF-kappaB</rdfs:label>
+ <rdfs:label xml:lang="en">sequence-specific DNA binding RNA polymerase
II transcription factor activity</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070628">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006508">
+ <obi:IAO_0000111 xml:lang="en">proteolysis</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">The hydrolysis of proteins into smaller
polypeptides and/or amino acids by cleavage of their peptide
bonds.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">proteolysis</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032403"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019538"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">proteasome binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a proteasome, a large multisubunit protein complex that
catalyzes protein degradation.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">proteasome binding</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090317">
- <obi:IAO_0000111 xml:lang="en">negative regulation of intracellular
protein transport</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051090">
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the activity of a transcription factor, any
factor involved in the initiation or regulation of
transcription.</obi:IAO_0000115>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051224"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006355"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that decreases the
frequency, rate or extent of the directed movement of proteins within
cells.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">regulation of transcription factor
activity</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0033157"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090046"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">negative regulation of intracellular protein
transport</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">regulation of transcription factor
activity</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032387"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051101"/>
</rdfs:subClassOf>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071530">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0006461"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">FHA domain-mediated complex
assembly</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">A process of protein complex assembly
in which the arrangement and bonding together of the set of components that
form the protein complex is mediated by an FHA (forkhead-associated) domain
interaction.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">FHA domain-mediated complex
assembly</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032403">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003674">
+ <obi:IAO_0000111 xml:lang="en">molecular_function</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Elemental activities, such as catalysis
or binding, describing the actions of a gene product at the molecular
level. A given gene product may exhibit one or more molecular
functions.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">molecular_function</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050789">
+ <obi:IAO_0000111 xml:lang="en">regulation of biological
process</obi:IAO_0000111>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">regulation of biological process</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005515"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065007"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">protein complex binding</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of a biological process. Biological processes are
regulated by many means; examples include the control of gene expression,
protein modification or interaction with a protein or substrate
molecule.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003824">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any protein complex (a complex of two or more proteins
that may include other nonprotein molecules).</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">protein complex
binding</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">catalytic activity</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">catalytic activity</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Catalysis of a biochemical reaction at
physiological temperatures. In biologically catalyzed reactions, the
reactants are known as substrates, and the catalysts are naturally
occurring macromolecular substances known as enzymes. Enzymes possess
specific binding sites for substrates, and are usually composed wholly or
largely of protein, but RNA that has catalytic activity (ribozyme) is often
also regarded as enzymatic.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044237">
- <obi:IAO_0000111 xml:lang="en">cellular metabolic
process</obi:IAO_0000111>
- <rdfs:label xml:lang="en">cellular metabolic process</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006807">
+ <rdfs:label xml:lang="en">nitrogen compound metabolic
process</rdfs:label>
<rdfs:subClassOf>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008152"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways by
which individual cells transform chemical substances.</obi:IAO_0000115>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">nitrogen compound metabolic
process</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
involving organic or inorganic compounds that contain nitrogen, including
(but not limited to) nitrogen fixation, nitrification, denitrification,
assimilatory/dissimilatory nitrate reduction and the interconversion of
nitrogenous organic matter and ammonium.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0010556">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009987"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0060255"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000111 xml:lang="en">regulation of macromolecule
biosynthetic process</obi:IAO_0000111>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009889"/>
</rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">regulation of macromolecule biosynthetic
process</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the rate,
frequency or extent of the chemical reactions and pathways resulting in the
formation of a macromolecule, any molecule of high relative molecular mass,
the structure of which essentially comprises the multiple repetition of
units derived, actually or conceptually, from molecules of low relative
molecular mass.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051220">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043234">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051224"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032991"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">cytoplasmic sequestering of
protein</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0032507"/>
- <obi:IAO_0000115 xml:lang="en">The selective interaction of a protein
with specific molecules in the cytoplasm, thereby inhibiting its transport
into other areas of the cell.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">cytoplasmic sequestering of
protein</obi:IAO_0000111>
+ <obi:IAO_0000111 xml:lang="en">protein complex</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Any macromolecular complex composed of
two or more polypeptide subunits, which may or may not be identical.
Protein complexes may have other associated non-protein prosthetic groups,
such as nucleotides, metal ions or other small molecules.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">protein complex</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090047">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034763">
+ <obi:IAO_0000111 xml:lang="en">negative regulation of transmembrane
transport</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">negative regulation of transmembrane
transport</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090046"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034762"/>
</rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">Any process that stops, prevents, or
reduces the frequency, rate or extent of the directed movement of a solute
from one side of a membrane to the other.</obi:IAO_0000115>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044093"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048523"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">positive regulation of transcription
regulator activity</obi:IAO_0000111>
- <rdfs:label xml:lang="en">positive regulation of transcription
regulator activity</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that increases the
frequency, rate or extent of transcription regulator activity, any
molecular function that plays a role in regulating transcription; may bind
a promoter or enhancer DNA sequence or interact with a DNA-binding
transcription factor.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031326">
- <rdfs:label xml:lang="en">regulation of cellular biosynthetic
process</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the chemical reactions and pathways resulting
in the formation of substances, carried out by individual
cells.</obi:IAO_0000115>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031323"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051051"/>
</rdfs:subClassOf>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070628">
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009889"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032403"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">regulation of cellular biosynthetic
process</obi:IAO_0000111>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">proteasome binding</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">proteasome binding</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a proteasome, a large multisubunit protein complex that
catalyzes protein degradation.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044459">
- <obi:IAO_0000111 xml:lang="en">plasma membrane part</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016879">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044425"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016874"/>
</rdfs:subClassOf>
+ <obi:IAO_0000111 xml:lang="en">ligase activity, forming
carbon-nitrogen bonds</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">ligase activity, forming carbon-nitrogen
bonds</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Catalysis of the joining of two
molecules, or two groups within a single molecule, via a carbon-nitrogen
bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a
similar triphosphate.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Any constituent part of the plasma
membrane, the membrane surrounding a cell that separates the cell from its
external environment. It consists of a phospholipid bilayer and associated
proteins.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">plasma membrane part</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071535">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070647">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006464"/>
</rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">A protein modification process by which
one or more groups of a small protein, such as ubiquitin or a
ubiquitin-like protein, are covalently attached to or removed from a target
protein.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">protein modification by small protein
conjugation or removal</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">RING-like zinc finger domain
binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a RING-like zinc finger domain domain of a protein. The
RING-like domain is a zinc finger domain that is related to the C3HC4 RING
finger domain.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">RING-like zinc finger domain
binding</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">protein modification by small protein
conjugation or removal</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008385">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034762">
+ <obi:IAO_0000111 xml:lang="en">regulation of transmembrane
transport</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050794"/>
</rdfs:subClassOf>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">regulation of transmembrane
transport</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044445"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051049"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">A protein serine/threonine kinase that
phosphorylates IkappaB, thereby targeting this for proteasomal degradation
and allowing the nuclear translocation of kB. Composed of alpha, beta and
gamma subunits, the latter not having kinase activity but presumed to play
a regulatory role.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">IkappaB kinase complex</obi:IAO_0000111>
- <rdfs:label xml:lang="en">IkappaB kinase complex</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the directed movement of a solute from one
side of a membrane to the other.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0010556">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043388">
+ <obi:IAO_0000115 xml:lang="en">Any process that increases the
frequency, rate or extent of DNA binding. DNA binding is any process in
which a gene product interacts selectively with DNA (deoxyribonucleic
acid).</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">regulation of macromolecule biosynthetic
process</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">regulation of macromolecule
biosynthetic process</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0060255"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051099"/>
</rdfs:subClassOf>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009889"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051101"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the rate,
frequency or extent of the chemical reactions and pathways resulting in the
formation of a macromolecule, any molecule of high relative molecular mass,
the structure of which essentially comprises the multiple repetition of
units derived, actually or conceptually, from molecules of low relative
molecular mass.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">positive regulation of DNA
binding</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">positive regulation of DNA
binding</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003702">
- <rdfs:label xml:lang="en">RNA polymerase II transcription factor
activity</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">RNA polymerase II transcription factor
activity</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Functions to initiate or regulate RNA
polymerase II transcription.</obi:IAO_0000115>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0060255">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0030528"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019222"/>
</rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">regulation of macromolecule metabolic
process</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the chemical reactions and pathways involving
macromolecules, any molecule of high relative molecular mass, the structure
of which essentially comprises the multiple repetition of units derived,
actually or conceptually, from molecules of low relative molecular
mass.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">regulation of macromolecule metabolic
process</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051049">
- <rdfs:label xml:lang="en">regulation of transport</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the directed movement of substances (such as
macromolecules, small molecules, ions) into, out of, within or between
cells by means of some external agent such as a transporter or
pore.</obi:IAO_0000115>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031326">
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">regulation of cellular biosynthetic
process</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">regulation of cellular biosynthetic
process</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032879"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009889"/>
</rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031323"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the chemical reactions and pathways resulting
in the formation of substances, carried out by individual
cells.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006366">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">regulation of
transport</obi:IAO_0000111>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006351"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">The synthesis of RNA from a DNA
template by RNA polymerase II (Pol II), originating at a Pol II-specific
promoter. Includes transcription of messenger RNA (mRNA) and certain small
nuclear RNAs (snRNAs).</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">transcription from RNA polymerase II
promoter</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">transcription from RNA polymerase II
promoter</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003700">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051252">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0060255"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">regulation of RNA metabolic
process</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">regulation of RNA metabolic
process</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003677"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019219"/>
</rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the chemical reactions and pathways involving
RNA.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070976">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0030528"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">transcription factor activity</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The function of binding to a specific
DNA sequence in order to modulate transcription. The transcription factor
may or may not also interact selectively with a protein or macromolecular
complex.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">transcription factor
activity</obi:IAO_0000111>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a Toll-Interleukin receptor (TIR) domain of a protein.
The TIR domain is an intracellular 200 residue domain that is found in the
Toll protein, the interleukin-1 receptor (IL-1R), and MyD88; it contains
three highly-conserved regions, and mediates protein-protein interactions
between the Toll-like receptors (TLRs) and signal-transduction
components.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">TIR domain binding</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">TIR domain binding</obi:IAO_0000111>
</owl:Class>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0060341">
<rdfs:subClassOf>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050794"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of a process by which a cell, a substance, or a
cellular entity is transported to, or maintained in a specific location
within or in the membrane of a cell.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">regulation of cellular
localization</rdfs:label>
<obi:IAO_0000111 xml:lang="en">regulation of cellular
localization</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of a process in which a cell, a substance, or a
cellular entity is transported to, or maintained in a specific location
within or in the membrane of a cell.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">regulation of cellular
localization</rdfs:label>
<rdfs:subClassOf>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032879"/>
</rdfs:subClassOf>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032386">
- <rdfs:label xml:lang="en">regulation of intracellular
transport</rdfs:label>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0060341"/>
- <obi:IAO_0000111 xml:lang="en">regulation of intracellular
transport</obi:IAO_0000111>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0051049"/>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the directed movement of substances within
cells.</obi:IAO_0000115>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042308">
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090317"/>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0034763"/>
+ <obi:IAO_0000115 xml:lang="en">Any process that stops, prevents, or
reduces the frequency, rate or extent of the movement of proteins from the
cytoplasm into the nucleus.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">negative regulation of protein import
into nucleus</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0046823"/>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042306"/>
+ </rdfs:subClassOf>
+ <rdfs:label xml:lang="en">negative regulation of protein import into
nucleus</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070936">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0010468">
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of gene expression. Gene expression is the
process in which a gene's coding sequence is converted into a mature gene
product or products (proteins or RNA). This includes the production of an
RNA transcript as well as any processing to produce a mature RNA product or
an mRNA (for protein-coding genes) and the translation of that mRNA into
protein. Some protein processing events may be included when they are
required to form an active form of a product from an inactive precursor
form.</obi:IAO_0000115>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">regulation of gene expression</rdfs:label>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0060255"/>
+ <obi:IAO_0000111 xml:lang="en">regulation of gene
expression</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022411">
+ <rdfs:label xml:lang="en">cellular component disassembly</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016567"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016043"/>
</rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">protein K48-linked
ubiquitination</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">A protein ubiquitination process in
which a polymer of ubiquitin, formed by linkages between lysine residues at
position 48 of the ubiquitin monomers, is added to a protein. K48-linked
ubiquitination targets the substrate protein for
degradation.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">protein K48-linked
ubiquitination</obi:IAO_0000111>
+ <obi:IAO_0000111 xml:lang="en">cellular component
disassembly</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">A cellular process that results in the
breakdown of a cellular component.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034645">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070513">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044249"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904"/>
</rdfs:subClassOf>
+ <rdfs:label xml:lang="en">death domain binding</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">death domain binding</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a death domain of a protein. The death domain (DD) is a
homotypic protein interaction module composed of a bundle of six
alpha-helices. DD bind each other forming oligomers. Some DD-containing
proteins are involved in the regulation of apoptosis and inflammation
through their activation of caspases and NF-kappaB.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048523">
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009059"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048519"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">cellular macromolecule biosynthetic
process</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
resulting in the formation of a macromolecule, any molecule of high
relative molecular mass, the structure of which essentially comprises the
multiple repetition of units derived, actually or conceptually, from
molecules of low relative molecular mass, carried out by individual
cells.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">cellular macromolecule biosynthetic
process</obi:IAO_0000111>
+ <obi:IAO_0000111 xml:lang="en">negative regulation of cellular
process</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Any process that stops, prevents, or
reduces the frequency, rate or extent of a cellular process, any of those
that are carried out at the cellular level, but are not necessarily
restricted to a single cell. For example, cell communication occurs among
more than one cell, but occurs at the cellular level.</obi:IAO_0000115>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044260"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050794"/>
</rdfs:subClassOf>
+ <rdfs:label xml:lang="en">negative regulation of cellular
process</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043933">
- <obi:IAO_0000115 xml:lang="en">Any process by which macromolecules
aggregate, disaggregate, or are modified, resulting in the formation,
disassembly, or alteration of a macromolecular complex.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">macromolecular complex subunit
organization</rdfs:label>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016043"/>
- </rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0035326">
+ <obi:IAO_0000111 xml:lang="en">enhancer binding</obi:IAO_0000111>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">macromolecular complex subunit
organization</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0035370">
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with an enhancer, a cis-acting sequence that increases the
utilization of some eukaryotic promoters, and can function in either
orientation and in any location (upstream or downstream) relative to the
core promoter.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">enhancer binding</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0031371"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044212"/>
</rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">A heterodimeric ubiquitin conjugating
enzyme complex that catalyzes assembly of K63-linked polyubiquitin chains
and is involved in NF-kappaB activation. In humans at least, the complex
comprises the ubiquitin-conjugating enzyme UBC13 and ubiquitin-conjugating
enzyme variant 1A (UEV1A).</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">UBC13-UEV1A complex</obi:IAO_0000111>
- <rdfs:label xml:lang="en">UBC13-UEV1A complex</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005938">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032774">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
resulting in the formation of RNA, ribonucleic acid, one of the two main
type of nucleic acid, consisting of a long, unbranched macromolecule formed
from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes
polymerization of ribonucleotide monomers.</obi:IAO_0000115>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044444"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016070"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">cell cortex</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">cell cortex</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">The region of a cell that lies just
beneath the plasma membrane and often, but not always, contains a network
of actin filaments and associated proteins.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">RNA biosynthetic
process</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">RNA biosynthetic process</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044249"/>
+ </rdfs:subClassOf>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032388">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043565">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0032386"/>
- <rdfs:label xml:lang="en">positive regulation of intracellular
transport</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">positive regulation of intracellular
transport</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0003677"/>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich
DNA binding, or with a specific sequence motif or type of DNA e.g. promotor
binding or rDNA binding.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">sequence-specific DNA binding</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">sequence-specific DNA
binding</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051223">
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the directed movement of a protein into, out
of or within a cell, or between cells, by means of some agent such as a
transporter or pore.</obi:IAO_0000115>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051050"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051049"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that activates or increases
the frequency, rate or extent of the directed movement of substances within
cells.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">regulation of protein
transport</obi:IAO_0000111>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">regulation of protein transport</rdfs:label>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0070201"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065008">
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of a biological quality. A biological quality is
a measurable attribute of an organism or part of an organism, such as size,
mass, shape, color, etc.</obi:IAO_0000115>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044248">
+ <obi:IAO_0000111 xml:lang="en">cellular catabolic
process</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">cellular catabolic process</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065007"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044237"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">regulation of biological
quality</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
resulting in the breakdown of substances, carried out by individual
cells.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">regulation of biological quality</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009056"/>
+ </rdfs:subClassOf>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042277">
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with peptides, any of a group of organic compounds
comprising two or more amino acids linked by peptide
bonds.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">peptide binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">peptide binding</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043226">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005488"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005575"/>
</rdfs:subClassOf>
+ <obi:IAO_0000111 xml:lang="en">organelle</obi:IAO_0000111>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">Organized structure of distinctive
morphology and function. Includes the nucleus, mitochondria, plastids,
vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic
structures such as anammoxosomes and pirellulosomes. Excludes the plasma
membrane.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">organelle</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042345">
- <obi:IAO_0000111 xml:lang="en">regulation of NF-kappaB import into
nucleus</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the transfer of NF-kappaB, a transcription
factor for eukaryotic RNA polymerase II promoters, from the cytoplasm into
the nucleus, across the nuclear membrane.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">regulation of NF-kappaB import into
nucleus</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032507">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0042990"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0010468">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of gene expression. Gene expression is the
process in which a gene's coding sequence is converted into a mature gene
product or products (proteins or RNA). This includes the production of an
RNA transcript as well as any processing to produce a mature RNA product or
an mRNA (for protein-coding genes) and the translation of that mRNA into
protein. Some protein processing events may be included when they are
required to form an active form of a product from an inactive precursor
form.</obi:IAO_0000115>
+ <obi:IAO_0000115 xml:lang="en">Any process in which a protein is
maintained in a specific location within, or in the membrane of, a cell,
and is prevented from moving elsewhere.</obi:IAO_0000115>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0060255"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051651"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">regulation of gene expression</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">regulation of gene
expression</obi:IAO_0000111>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045185"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000111 xml:lang="en">maintenance of protein location in
cell</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">maintenance of protein location in
cell</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016043">
- <rdfs:label xml:lang="en">cellular component organization</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032984">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043933"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">cellular component
organization</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">A process that is carried out at the
cellular level which results in the assembly, arrangement of constituent
parts, or disassembly of a cellular component.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">macromolecular complex
disassembly</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0022411"/>
+ <rdfs:label xml:lang="en">macromolecular complex
disassembly</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">The disaggregation of a macromolecular
complex into its constituent components.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019222">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042307">
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034764"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000111 xml:lang="en">positive regulation of protein import
into nucleus</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">positive regulation of protein import into
nucleus</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090316"/>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046824"/>
+ </rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">regulation of metabolic process</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Any process that activates or increases
the frequency, rate or extent of movement of proteins from the cytoplasm
into the nucleus.</obi:IAO_0000115>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0050789"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042306"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the chemical reactions and pathways within a
cell or an organism.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">regulation of metabolic
process</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016301">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0007253">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016772"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042994"/>
</rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">kinase activity</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Catalysis of the transfer of a
phosphate group, usually from ATP, to a substrate
molecule.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">kinase activity</obi:IAO_0000111>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042347"/>
+ </rdfs:subClassOf>
+ <rdfs:label xml:lang="en">cytoplasmic sequestering of
NF-kappaB</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">The selective interaction of the
transcription factor NF-kappaB with specific molecules in the cytoplasm,
thereby inhibiting its translocation into the nucleus.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">cytoplasmic sequestering of
NF-kappaB</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0030506">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042277">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008092"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005488"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">ankyrin binding</obi:IAO_0000111>
- <rdfs:label xml:lang="en">ankyrin binding</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with ankyrin, a 200 kDa cytoskeletal protein that attaches
other cytoskeletal proteins to integral membrane proteins.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">peptide binding</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">peptide binding</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with peptides, any of a group of organic compounds
comprising two or more amino acids linked by peptide
bonds.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034641">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003700">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0044237"/>
- <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
involving various organic and inorganic nitrogenous compounds, as carried
out by individual cells.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">cellular nitrogen compound metabolic
process</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006807"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0001071"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">cellular nitrogen compound metabolic
process</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a specific DNA sequence in order to modulate
transcription. The transcription factor may or may not also interact
selectively with a protein or macromolecular complex.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">sequence-specific DNA binding
transcription factor activity</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">sequence-specific DNA binding transcription
factor activity</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003674">
- <obi:IAO_0000111 xml:lang="en">molecular_function</obi:IAO_0000111>
- <rdfs:label xml:lang="en">molecular_function</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Elemental activities, such as catalysis
or binding, describing the actions of a gene product at the molecular
level. A given gene product may exhibit one or more molecular
functions.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005575">
- <obi:IAO_0000111 xml:lang="en">cellular_component</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">The part of a cell or its extracellular
environment in which a gene product is located. A gene product may be
located in one or more parts of a cell and its location may be as specific
as a particular macromolecular complex, that is, a stable, persistent
association of macromolecules that function together.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">cellular_component</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070976">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043412">
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043170"/>
</rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">TIR domain binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">TIR domain binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a Toll-Interleukin receptor (TIR) domain of a protein.
The TIR domain is an intracellular 200 residue domain that is found in the
Toll protein, the interleukin-1 receptor (IL-1R), and MyD88; it contains
three highly-conserved regions, and mediates protein-protein interactions
between the Toll-like receptors (TLRs) and signal-transduction
components.</obi:IAO_0000115>
+ <obi:IAO_0000115 xml:lang="en">The covalent alteration of one or more
monomeric units in a polypeptide, polynucleotide, polysaccharide, or other
biological macromolecule, resulting in a change in its
properties.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">macromolecule modification</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">macromolecule
modification</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051222">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090047">
+ <obi:IAO_0000115 xml:lang="en">Any process that increases the
frequency, rate or extent of transcription regulator activity, any
molecular function that plays a role in regulating transcription; may bind
a promoter or enhancer DNA sequence or interact with a DNA-binding
transcription factor.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Any process that activates or increases
the frequency, rate or extent of the directed movement of a protein into,
out of, within or between cells by means of some external agent such as a
transporter or pore.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">positive regulation of protein
transport</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">positive regulation of transcription
regulator activity</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051050"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090046"/>
</rdfs:subClassOf>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051223"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044093"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">positive regulation of protein
transport</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">positive regulation of transcription
regulator activity</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016070">
- <obi:IAO_0000115 xml:lang="en">The cellular chemical reactions and
pathways involving RNA, ribonucleic acid, one of the two main type of
nucleic acid, consisting of a long, unbranched macromolecule formed from
ribonucleotides joined in 3',5'-phosphodiester linkage.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">RNA metabolic process</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032446">
+ <rdfs:label xml:lang="en">protein modification by small protein
conjugation</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">protein modification by small protein
conjugation</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0070647"/>
+ <obi:IAO_0000115 xml:lang="en">A protein modification process in which
one or more groups of a small protein, such as ubiquitin or a
ubiquitin-like protein, are covalently attached to a target
protein.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051224">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044260"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051051"/>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0090304"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">RNA metabolic process</rdfs:label>
+ <rdfs:label xml:lang="en">negative regulation of protein
transport</rdfs:label>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0051223"/>
+ <obi:IAO_0000115 xml:lang="en">Any process that stops, prevents, or
reduces the frequency, rate or extent of the directed movement of a protein
into, out of or within a cell, or between cells, by means of some agent
such as a transporter or pore.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">negative regulation of protein
transport</obi:IAO_0000111>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043388">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0033157">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051101"/>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051099"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032386"/>
</rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Any process that increases the
frequency, rate or extent of DNA binding. DNA binding is any process by
which a gene product interacts selectively with DNA (deoxyribonucleic
acid).</obi:IAO_0000115>
- <rdfs:label xml:lang="en">positive regulation of DNA
binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">positive regulation of DNA
binding</obi:IAO_0000111>
+ <obi:IAO_0000111 xml:lang="en">regulation of intracellular protein
transport</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">regulation of intracellular protein
transport</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of the directed movement of proteins within
cells.</obi:IAO_0000115>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0051223"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051099">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044249">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044093"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009058"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any process that activates or increases
the rate or extent of binding, the selective interaction of a molecule with
one or more specific sites on another molecule.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">positive regulation of binding</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051098"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044237"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">positive regulation of
binding</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">cellular biosynthetic process</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">cellular biosynthetic
process</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">The chemical reactions and pathways
resulting in the formation of substances, carried out by individual
cells.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022411">
- <obi:IAO_0000115 xml:lang="en">A cellular process that results in the
breakdown of a part of the cell.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">cellular component
disassembly</obi:IAO_0000111>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0016043"/>
- <rdfs:label xml:lang="en">cellular component disassembly</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043227">
+ <obi:IAO_0000115 xml:lang="en">Organized structure of distinctive
morphology and function, bounded by a single or double lipid bilayer
membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and
vesicles. Excludes the plasma membrane.</obi:IAO_0000115>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0043226"/>
+ <obi:IAO_0000111 xml:lang="en">membrane-bounded
organelle</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">membrane-bounded organelle</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
</owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051603">
+ <obi:IAO_0000111 xml:lang="en">proteolysis involved in cellular
protein catabolic process</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0006508"/>
+ <rdfs:label xml:lang="en">proteolysis involved in cellular protein
catabolic process</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">The hydrolysis of a peptide bond or
bonds within a protein as part of the chemical reactions and pathways
resulting in the breakdown of a protein by individual
cells.</obi:IAO_0000115>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ </owl:Class>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0055131">
<rdfs:subClassOf>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904"/>
</rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">C3HC4-type RING finger domain
binding</rdfs:label>
<obi:IAO_0000111 xml:lang="en">C3HC4-type RING finger domain
binding</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">C3HC4-type RING finger domain
binding</rdfs:label>
<obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a C3HC4-type zinc finger domain of a protein. The
C3HC4-type zinc finger is a variant of RING finger, is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc ions, and has the
consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C,
where X is any amino acid. Many proteins containing a C3HC4-type RING
finger play a key role in the ubiquitination pathway.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019538">
***The diff for this file has been truncated for email.***
=======================================
---
/trunk/src/ontology/immunology/proto/TLR2-Lta-signaling-pathway-external.owl
Thu Oct 21 10:38:40 2010
+++
/trunk/src/ontology/immunology/proto/TLR2-Lta-signaling-pathway-external.owl
Wed Mar 14 10:27:26 2012
@@ -1,19 +1,19 @@
<?xml version="1.0"?>
-<rdf:RDF
xmlns="http://purl.obolibrary.org/obo/ido/dev/TLR2-Lta-signaling-pathway-external.owl#"
-
xml:base="http://purl.obolibrary.org/obo/ido/dev/TLR2-Lta-signaling-pathway-external.owl"
+<rdf:RDF xmlns="obo:ido/dev/TLR2-Lta-signaling-pathway-external.owl#"
+ xml:base="obo:ido/dev/TLR2-Lta-signaling-pathway-external.owl"
+ xmlns:PATO="http://purl.org/obo/owl/PATO#"
+ xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"

xmlns:submitted_tlrtlr="http://purl.org/obo/owl/PRO#submitted_tlrtlr/6"
xmlns:obo="http://purl.obolibrary.org/obo/"
- xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
- xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
- xmlns:PRO="http://purl.org/obo/owl/PRO#"
- xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:PATO="http://purl.org/obo/owl/PATO#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:GO="http://purl.org/obo/owl/GO#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:span="http://www.ifomis.org/bfo/1.1/span#"
- xmlns:GO="http://purl.org/obo/owl/GO#">
- <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/dev/TLR2-Lta-signaling-pathway-external.owl">
+ xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
+ xmlns:PRO="http://purl.org/obo/owl/PRO#"
+ xmlns:span="http://www.ifomis.org/bfo/1.1/span#">
+ <owl:Ontology
rdf:about="obo:ido/dev/TLR2-Lta-signaling-pathway-external.owl">
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/ontology-metadata.owl"/>
</owl:Ontology>

@@ -168,8 +168,8 @@

<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0004842">
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
- <obo:IAO_0000116>handle E3l from row 108 of parsed-handle-block in
sheet Sheet1 from workbook ido-tlr2</obo:IAO_0000116>
<obo:IAO_0000116>handle udpla from row 100 of parsed-handle-block
in sheet Sheet1 from workbook ido-tlr2</obo:IAO_0000116>
+ <obo:IAO_0000116>handle E3l from row 108 of parsed-handle-block in
sheet Sheet1 from workbook ido-tlr2</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
</owl:Class>

@@ -477,8 +477,8 @@
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0055131">
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <obo:IAO_0000116>handle RLb from row 112 of parsed-handle-block in
sheet Sheet1 from workbook ido-tlr2</obo:IAO_0000116>
<obo:IAO_0000116>handle zfbd from row 93 of parsed-handle-block in
sheet Sheet1 from workbook ido-tlr2</obo:IAO_0000116>
+ <obo:IAO_0000116>handle RLb from row 112 of parsed-handle-block in
sheet Sheet1 from workbook ido-tlr2</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
</owl:Class>

=======================================
--- /trunk/src/ontology/immunology/proto/TLR2-Lta-signaling-pathway.owl Thu
Oct 21 11:08:00 2010
+++ /trunk/src/ontology/immunology/proto/TLR2-Lta-signaling-pathway.owl Wed
Mar 14 10:27:26 2012
@@ -1,23 +1,23 @@
<?xml version="1.0"?>
<rdf:RDF
xmlns="http://purl.obolibrary.org/obo/ido/dev/TLR2-Lta-signaling-pathway.owl#"

xml:base="http://purl.obolibrary.org/obo/ido/dev/TLR2-Lta-signaling-pathway.owl"
+ xmlns:PATO="http://purl.org/obo/owl/PATO#"
xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
- xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
- xmlns:PRO="http://purl.org/obo/owl/PRO#"
- xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#"
+ xmlns:GO="http://purl.org/obo/owl/GO#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:PATO="http://purl.org/obo/owl/PATO#"
- xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:GO="http://purl.org/obo/owl/GO#"
- xmlns:owl="http://www.w3.org/2002/07/owl#">
+ xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
+ xmlns:PRO="http://purl.org/obo/owl/PRO#"
+ xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#">
<owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/dev/TLR2-Lta-signaling-pathway.owl">
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/ontology-metadata.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/dev/TLR2-Lta-signaling-pathway-external-derived.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/dev/TLR2-Lta-signaling-pathway-external.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/dev/pathway-defs.owl"/>
- <owl:imports rdf:resource="http://www.ifomis.org/bfo/1.1"/>
+ <owl:imports rdf:resource="http://www.ifomis.org/bfo/1.1#"/>
<owl:imports rdf:resource="http://www.obofoundry.org/ro/ro.owl"/>
</owl:Ontology>

@@ -90,39 +90,21 @@

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011741">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000401">
<rdfs:label>LTA + TLR2TLR6 -> TLR2TLR6LTA</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:allValuesFrom>
- <owl:Class>
- <owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_28640"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0035355"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6lta"/>
- <owl:Class>
- <owl:complementOf>
- <owl:Class>
- <owl:unionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- </owl:unionOf>
- </owl:Class>
- </owl:complementOf>
- </owl:Class>
- </owl:unionOf>
- </owl:Class>
- </owl:allValuesFrom>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0035355"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0035355"/>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6lta"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -131,7 +113,7 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0030275"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_28640"/>
@@ -147,10 +129,10 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0030275"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0035355"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_28640"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -166,7 +148,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_28640"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0035355"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -181,8 +163,26 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6lta"/>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:allValuesFrom>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_28640"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0035355"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6lta"/>
+ <owl:Class>
+ <owl:complementOf>
+ <owl:Class>
+ <owl:unionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:allValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000116>process LTA+TLR2TLR6->TLR2TLR6LTA, LRRdb of
LTA, LTAbp, , , LRR of tLR2/6 from row 134 of parsed-process-block in sheet
Sheet1 from workbook ido-tlr2</obo:IAO_0000116>
@@ -190,9 +190,9 @@

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011742">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000402">
<rdfs:label>TLR2TLR6LTA + tirappip2 -> TLR2TLR6LTAtirap +
pip2</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
@@ -200,6 +200,44 @@
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070976"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001751"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tirappip2"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tirappip2"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_18348"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
+ <owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
@@ -213,8 +251,18 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatirap"/>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tirappip2"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -225,8 +273,8 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tirappip2"/>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatirap"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -266,10 +314,10 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001751"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0035355"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tirappip2"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6lta"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -280,20 +328,44 @@
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
+ <obo:IAO_0000116>process
TLR2TLR6LTA+tirappip2->TLR2TLR6LTAtirap+pip2, tirdb of tirap in
tirappip2 and tirdb of TLR2TLR6 in TLR2TLR6LTA, tirdbp, , , from row 135
of parsed-process-block in sheet Sheet1 from workbook
ido-tlr2</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000403">
+ <rdfs:label>TLR2TLR6LTAtirap + myd88 ->
TLR2TLR6LTAtm</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:allValuesFrom>
<owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tirappip2"/>
- </owl:Restriction>
- </owl:intersectionOf>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001740"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatirap"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatm"/>
+ <owl:Class>
+ <owl:complementOf>
+ <owl:Class>
+ <owl:unionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:unionOf>
</owl:Class>
- </owl:someValuesFrom>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatirap"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -308,7 +380,7 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0035355"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001751"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6lta"/>
@@ -324,22 +396,6 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/CHEBI#CHEBI_18348"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <obo:IAO_0000116>process
TLR2TLR6LTA+tirappip2->TLR2TLR6LTAtirap+pip2, tirdb of tirap in
tirappip2 and tirdb of TLR2TLR6 in TLR2TLR6LTA, tirdbp, , , from row 135
of parsed-process-block in sheet Sheet1 from workbook
ido-tlr2</obo:IAO_0000116>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011743">
- <rdfs:label>TLR2TLR6LTAtirap + myd88 ->
TLR2TLR6LTAtm</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -356,30 +412,14 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatm"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070976"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001751"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6lta"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatirap"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -388,6 +428,12 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatm"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -404,14 +450,40 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001740"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000116>process TLR2TLR6LTAtirap + myd88 ->
TLR2TLR6LTAtm, tirdb of tirap in TLR2TLR6LTA and tirdb of myd88,
tirdbp, , , from row 136 of parsed-process-block in sheet Sheet1 from
workbook ido-tlr2</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000404">
+ <rdfs:label>TLR2TLR6LTAtm + IRK4 -> TLR2TLR6LTAtmIRK4 in
pcyto</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070513"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatirap"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001740"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatm"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -424,9 +496,9 @@
<owl:allValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001740"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatirap"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001780"/>
<rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatm"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4"/>
<owl:Class>
<owl:complementOf>
<owl:Class>
@@ -444,33 +516,17 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatirap"/>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001740"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <obo:IAO_0000116>process TLR2TLR6LTAtirap + myd88 ->
TLR2TLR6LTAtm, tirdb of tirap in TLR2TLR6LTA and tirdb of myd88,
tirdbp, , , from row 136 of parsed-process-block in sheet Sheet1 from
workbook ido-tlr2</obo:IAO_0000116>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011744">
- <rdfs:label>TLR2TLR6LTAtm + IRK4 -> TLR2TLR6LTAtmIRK4 in
pcyto</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070513"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001780"/>
@@ -498,8 +554,8 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0071550"/>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001780"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -510,35 +566,11 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:allValuesFrom>
- <owl:Class>
- <owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001780"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatm"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4"/>
- <owl:Class>
- <owl:complementOf>
- <owl:Class>
- <owl:unionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- </owl:unionOf>
- </owl:Class>
- </owl:complementOf>
- </owl:Class>
- </owl:unionOf>
- </owl:Class>
- </owl:allValuesFrom>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070513"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001780"/>
@@ -550,28 +582,8 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070513"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001740"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatm"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0071550"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -580,56 +592,26 @@
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001780"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
- </owl:Restriction>
- </rdfs:subClassOf>
<obo:IAO_0000116>process TLR2TLR6LTAtm+IRK4->
TLR2TLR6LTAtmIRK4, ddb of MyD88 in TLR2TLR6LTAtm and ddb of IRK4, ddp
located in pcyto, , , DD of Myd88 and DD of IRK4 from row 137 of
parsed-process-block in sheet Sheet1 from workbook
ido-tlr2</obo:IAO_0000116>
</owl:Class>

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011745">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000405">
<rdfs:label>TLR2TLR6LTAtmIRK4 + IRK1 -> TLR2TLR6LTAtmIRK4IK1 in
pcyto</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:allValuesFrom>
- <owl:Class>
- <owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001782"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1"/>
- <owl:Class>
- <owl:complementOf>
- <owl:Class>
- <owl:unionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- </owl:unionOf>
- </owl:Class>
- </owl:complementOf>
- </owl:Class>
- </owl:unionOf>
- </owl:Class>
- </owl:allValuesFrom>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001782"/>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -638,20 +620,10 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070513"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001740"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -676,26 +648,14 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070513"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001782"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -705,7 +665,37 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4"/>
+ <owl:allValuesFrom>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001782"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1"/>
+ <owl:Class>
+ <owl:complementOf>
+ <owl:Class>
+ <owl:unionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001782"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -717,7 +707,17 @@
<rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070513"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001782"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001740"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -729,9 +729,9 @@

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011746">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000406">
<rdfs:label>TLR2TLR6LTAtmIRK4IK1 -> TLR2TLR6LTAtmIRK4IK1p in
pcyto</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
@@ -762,20 +762,28 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006468"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1p"/>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0016301"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001780"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -813,20 +821,10 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0016301"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001780"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -835,18 +833,20 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1p"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006468"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000116>process
TLR2TLR6LTAtmIRK4IK1->TLR2TLR6LTAtmIRK4IK1p, kb of IRK1 in
TLR2TLR6LTAtmIRK4IK1 and Ka of IRK4 in TLR2TLR6LTAtmIRK4IK1, pop located in
pcyto, , , from row 139 of parsed-process-block in sheet Sheet1 from
workbook ido-tlr2</obo:IAO_0000116>
@@ -854,27 +854,15 @@

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011747">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000407">
<rdfs:label>TLR2TLR6LTAtmIRK4IK1p -> TLR2TLR6LTAtmIRK4IK1pp in
pcyto</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006468"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1pp"/>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1p"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -905,18 +893,37 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:allValuesFrom>
<owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1p"/>
- </owl:Restriction>
- </owl:intersectionOf>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1p"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1pp"/>
+ <owl:Class>
+ <owl:complementOf>
+ <owl:Class>
+ <owl:unionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:unionOf>
</owl:Class>
- </owl:someValuesFrom>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006468"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -947,12 +954,51 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1p"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1pp"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000116>process
TLR2TLR6LTAtmIRK4IK1p->TLR2TLR6LTAtmIRK4IK1pp, kb of IRK1p in
TLR2TLR6LTAtmIRK4IK1p and ka of IRK1p in TLR2TLR6LTAtmIRK4IK1p, pop located
in pcyto, , , from row 140 of parsed-process-block in sheet Sheet1 from
workbook ido-tlr2</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000408">
+ <rdfs:label>TLR2TLR6LTAtmIRK4IK1pp + tf6 ->
TLR2TLR6LTAtmIRK4IK1pptf6 in pcyto</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#occurs_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0005938"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
<owl:allValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1p"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000002382"/>
<rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1pp"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1pptf6"/>
<owl:Class>
<owl:complementOf>
<owl:Class>
@@ -970,22 +1016,6 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1p"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <obo:IAO_0000116>process
TLR2TLR6LTAtmIRK4IK1p->TLR2TLR6LTAtmIRK4IK1pp, kb of IRK1p in
TLR2TLR6LTAtmIRK4IK1p and ka of IRK1p in TLR2TLR6LTAtmIRK4IK1p, pop located
in pcyto, , , from row 140 of parsed-process-block in sheet Sheet1 from
workbook ido-tlr2</obo:IAO_0000116>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011748">
- <rdfs:label>TLR2TLR6LTAtmIRK4IK1pp + tf6 ->
TLR2TLR6LTAtmIRK4IK1pptf6 in pcyto</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0071534"/>
</owl:Restriction>
@@ -993,7 +1023,7 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tlr2tlr6ltatmirk4ik1pp"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002382"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -1004,30 +1034,14 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
***The diff for this file has been truncated for email.***
=======================================
---
/trunk/src/ontology/immunology/proto/dsRNA-recognition-and-signaling-via-TLR3-pathway-external.owl
Thu Oct 21 10:38:40 2010
+++
/trunk/src/ontology/immunology/proto/dsRNA-recognition-and-signaling-via-TLR3-pathway-external.owl
Wed Mar 14 10:27:26 2012
@@ -1,19 +1,19 @@
<?xml version="1.0"?>
-<rdf:RDF
xmlns="http://purl.obolibrary.org/obo/ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway-external.owl#"
-
xml:base="http://purl.obolibrary.org/obo/ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway-external.owl"
- xmlns:obo="http://purl.obolibrary.org/obo/"
- xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
- xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
- xmlns:PRO="http://purl.org/obo/owl/PRO#"
- xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+<rdf:RDF
xmlns="obo:ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway-external.owl#"
+
xml:base="obo:ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway-external.owl"
xmlns:PATO="http://purl.org/obo/owl/PATO#"
+ xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
xmlns:SO="http://purl.org/obo/owl/SO#"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:GO="http://purl.org/obo/owl/GO#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:span="http://www.ifomis.org/bfo/1.1/span#"
- xmlns:GO="http://purl.org/obo/owl/GO#">
- <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway-external.owl">
+ xmlns:CHEBI="http://purl.org/obo/owl/CHEBI#"
+ xmlns:PRO="http://purl.org/obo/owl/PRO#"
+ xmlns:span="http://www.ifomis.org/bfo/1.1/span#">
+ <owl:Ontology
rdf:about="obo:ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway-external.owl">
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/ontology-metadata.owl"/>
</owl:Ontology>

=======================================
---
/trunk/src/ontology/immunology/proto/dsRNA-recognition-and-signaling-via-TLR3-pathway.owl
Thu Oct 21 11:08:00 2010
+++
/trunk/src/ontology/immunology/proto/dsRNA-recognition-and-signaling-via-TLR3-pathway.owl
Wed Mar 14 10:27:26 2012
@@ -2,22 +2,21 @@
<rdf:RDF
xmlns="http://purl.obolibrary.org/obo/ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway.owl#"

xml:base="http://purl.obolibrary.org/obo/ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway.owl"
xmlns:obo="http://purl.obolibrary.org/obo/"
- xmlns:p1="#"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
- xmlns:PRO="http://purl.org/obo/owl/PRO#"
- xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#"
+ xmlns:GO="http://purl.org/obo/owl/GO#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:SO="http://purl.org/obo/owl/SO#"
- xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:GO="http://purl.org/obo/owl/GO#"
- xmlns:owl="http://www.w3.org/2002/07/owl#">
+ xmlns:PRO="http://purl.org/obo/owl/PRO#"
+ xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#"
+ xmlns:SO="http://purl.org/obo/owl/SO#">
<owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway.owl">
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/ontology-metadata.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway-external-derived.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway-external.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/dev/pathway-defs.owl"/>
- <owl:imports rdf:resource="http://www.ifomis.org/bfo/1.1"/>
+ <owl:imports rdf:resource="http://www.ifomis.org/bfo/1.1#"/>
<owl:imports rdf:resource="http://www.obofoundry.org/ro/ro.owl"/>
</owl:Ontology>

@@ -90,43 +89,13 @@

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011764">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000601">
<rdfs:label>2TLR3 + dsRNA -> 2TLR3dsRNA</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:allValuesFrom>
- <owl:Class>
- <owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrna"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/SO#SO_0001169"/>
- <owl:Class>
- <owl:complementOf>
- <owl:Class>
- <owl:unionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- </owl:unionOf>
- </owl:Class>
- </owl:complementOf>
- </owl:Class>
- </owl:unionOf>
- </owl:Class>
- </owl:allValuesFrom>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrna"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -134,7 +103,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/SO#SO_0001169"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -144,7 +113,7 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/SO#SO_0001169"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -156,7 +125,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/SO#SO_0001169"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -171,6 +140,18 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/SO#SO_0001169"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrna"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -198,7 +179,25 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3"/>
+ <owl:allValuesFrom>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrna"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/SO#SO_0001169"/>
+ <owl:Class>
+ <owl:complementOf>
+ <owl:Class>
+ <owl:unionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:allValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000116>process 2TLR3+dsRNA-> 2TLR3dsRNA, dsRNAb of
TLR3 in 2TLR3, RNApca, , , LRR from row 69 of parsed-process-block in sheet
TRIF from workbook TLR3</obo:IAO_0000116>
@@ -206,27 +205,31 @@

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011765">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000602">
<rdfs:label>2TLR3dsRNA + TRIF -> 2TLR3dsRNATRIF</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatrif"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070976"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001749"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001154"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrna"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -235,12 +238,6 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001749"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -257,6 +254,18 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0071523"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrna"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -273,14 +282,24 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0071523"/>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001749"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrna"/>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000001749"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -309,28 +328,8 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0070976"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001154"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrna"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatrif"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000116>process 2TLR3dsRNA+TRIF-> 2TLR3dsRNATRIF,
tirdb of trif and tirdb of TLR3 in 2TLR3dsRNA, tirdbp that has location
endves, , , TIR from row 70 of parsed-process-block in sheet TRIF from
workbook TLR3</obo:IAO_0000116>
@@ -338,19 +337,49 @@

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011766">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000603">
<rdfs:label>2TLR3dsRNATRIF + TRF3 ->
2TLR3dsRNATRIFTRF3</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:allValuesFrom>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000002289"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatrif"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3"/>
+ <owl:Class>
+ <owl:complementOf>
+ <owl:Class>
+ <owl:unionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatrif"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002289"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -367,26 +396,24 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:allValuesFrom>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
<owl:Class>
- <owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000002289"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatrif"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3"/>
- <owl:Class>
- <owl:complementOf>
- <owl:Class>
- <owl:unionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- </owl:unionOf>
- </owl:Class>
- </owl:complementOf>
- </owl:Class>
- </owl:unionOf>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002289"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
</owl:Class>
- </owl:allValuesFrom>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -415,16 +442,26 @@
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
+ <obo:IAO_0000116>process 2TLR3dsRNATRIF+TRF3->
2TLR3dsRNATRIFTRF3, trafdb of trif in 2TLR3dsRNATRIF, trafdbp located in
early endosome, , , TRAF from row 71 of parsed-process-block in sheet TRIF
from workbook TLR3</obo:IAO_0000116>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000604">
+ <rdfs:label>2TLR3dsRNATRIFTRF3 + TBK1tankIKKe ->
2TLR3dsRNATRIFTRF3TBK1tankIKKe</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002289"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankikke"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -436,23 +473,13 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002289"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000116>process 2TLR3dsRNATRIF+TRF3->
2TLR3dsRNATRIFTRF3, trafdb of trif in 2TLR3dsRNATRIF, trafdbp located in
early endosome, , , TRAF from row 71 of parsed-process-block in sheet TRIF
from workbook TLR3</obo:IAO_0000116>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011767">
- <rdfs:label>2TLR3dsRNATRIFTRF3 + TBK1tankIKKe ->
2TLR3dsRNATRIFTRF3TBK1tankIKKe</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
@@ -472,7 +499,7 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankikke"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -480,22 +507,6 @@
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
- <owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
@@ -509,12 +520,6 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankikke"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
<owl:allValuesFrom>
<owl:Class>
@@ -537,50 +542,40 @@
</owl:allValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankikke"/>
- </owl:Restriction>
- </rdfs:subClassOf>
<obo:IAO_0000116>process
2TLR3dsRNATRIFTRF3+TBK1tankIKKe->2TLR3dsRNATRIFTRF3TBK1tankIKKe, trafdb
of tank, trafdp located in eendo, , , TRAF from row 72 of
parsed-process-block in sheet TRIF from workbook TLR3</obo:IAO_0000116>
</owl:Class>

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011768">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000605">
<rdfs:label>2TLR3dsRNATRIFTRF3TBK1tankIKKe + ub ->
2TLR3dsRNATRIFTRF3TBK1tankk63ubIKKe</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:allValuesFrom>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
<owl:Class>
- <owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000016963"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankikke"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankk63ubikke"/>
- <owl:Class>
- <owl:complementOf>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043130"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom>
<owl:Class>
- <owl:unionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- </owl:unionOf>
+ <owl:intersectionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tank"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankk63ubikke"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
</owl:Class>
- </owl:complementOf>
- </owl:Class>
- </owl:unionOf>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
</owl:Class>
- </owl:allValuesFrom>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankk63ubikke"/>
+ </owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -607,28 +602,8 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043130"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tank"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankk63ubikke"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankk63ubikke"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -655,6 +630,30 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:allValuesFrom>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000016963"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankikke"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankk63ubikke"/>
+ <owl:Class>
+ <owl:complementOf>
+ <owl:Class>
+ <owl:unionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankikke"/>
</owl:Restriction>
@@ -664,13 +663,19 @@

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011769">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000606">
<rdfs:label>2TLR3dsRNATRIFTRF3TBK1tankk63ubIKKe ->
2TLR3dsRNATRIFTRF3 + TBK1tankk63ubIKKe</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
<owl:allValuesFrom>
<owl:Class>
@@ -695,8 +700,14 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankk63ubikke"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikke"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -717,18 +728,6 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_2tlr3dsrnatriftrf3tbk1tankk63ubikke"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikke"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0043241"/>
</owl:Restriction>
@@ -738,27 +737,37 @@

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011770">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000607">
<rdfs:label>TBK1tankk63ubIKKe + IRF3 ->
TBK1tankk63ubIKKeIRF3</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3"/>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002045"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikke"/>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikke"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002045"/>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -770,17 +779,7 @@
<rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0005515"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001779"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikke"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002045"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -817,10 +816,20 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0005515"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002045"/>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001779"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikke"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -829,18 +838,14 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikke"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikke"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006461"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -849,7 +854,7 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0005515"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000002045"/>
@@ -859,64 +864,29 @@
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006461"/>
- </owl:Restriction>
- </rdfs:subClassOf>
<obo:IAO_0000116>process
TBK1tankk63ubIKKe+IRF3->TBK1tankk63ubIKKeIRF3, pb of IRF3 and pb of TBK1
in TBK1tankk63ubIKKe, pca located in cyto, , , from row 75 of
parsed-process-block in sheet TRIF from workbook TLR3</obo:IAO_0000116>
</owl:Class>

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011771">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000608">
<rdfs:label>TBK1tankk63ubIKKeIRF3 ->
TBK1tankk63ubIKKeIRF3p</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3p"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:allValuesFrom>
- <owl:Class>
- <owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3p"/>
- <owl:Class>
- <owl:complementOf>
- <owl:Class>
- <owl:unionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
- </owl:unionOf>
- </owl:Class>
- </owl:complementOf>
- </owl:Class>
- </owl:unionOf>
- </owl:Class>
- </owl:allValuesFrom>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0016301"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0019900"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001778"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000002045"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3"/>
@@ -932,17 +902,23 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0019900"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0016301"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000002045"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000001778"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3"/>
@@ -958,12 +934,6 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
<owl:someValuesFrom>
<owl:Class>
@@ -978,20 +948,67 @@
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:allValuesFrom>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3p"/>
+ <owl:Class>
+ <owl:complementOf>
+ <owl:Class>
+ <owl:unionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3p"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
<obo:IAO_0000116>process TBK1tankk63ubIKKeIRF3->
TBK1tankk63ubIKKeIRF3p, Ka of IKKe in TBK1tankk63ubIKKeIRF3 and Kb of IRF3
in TBK1tankk63ubIKKeIRF3, pop located in cyto, , , from row 76 of
parsed-process-block in sheet TRIF from workbook TLR3</obo:IAO_0000116>
</owl:Class>

- 
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0011772">
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/opath_0000609">
<rdfs:label>TBK1tankk63ubIKKeIRF3p -> TBK1tankk63ubIKKe +
IRF3p</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has-output"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#PRO_000003260"/>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_participant"/>
+ <owl:allValuesFrom>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000003260"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikke"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3p"/>
+ <owl:Class>
+ <owl:complementOf>
+ <owl:Class>
+ <owl:unionOf
rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/GO#GO_0043234"/>
+ <rdf:Description
rdf:about="http://purl.org/obo/owl/PRO#PRO_000000001"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:complementOf>
+ </owl:Class>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:allValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -1002,18 +1019,8 @@
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000308"/>
- <owl:someValuesFrom>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0009001"/>
- <owl:Restriction>
- <owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/PRO#submitted_tbk1tankk63ubikkeirf3p"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:someValuesFrom>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0043241"/>
</owl:Restriction>
</rdfs:subClassOf>
***The diff for this file has been truncated for email.***
=======================================
---
/trunk/src/ontology/immunology/proto/dsrna-recognition-and-signaling-via-tlr3-pathway-external-derived.owl
Thu Oct 21 10:38:40 2010
+++
/trunk/src/ontology/immunology/proto/dsrna-recognition-and-signaling-via-tlr3-pathway-external-derived.owl
Wed Mar 14 10:27:26 2012
@@ -1,650 +1,717 @@
<?xml version="1.0"?>
<rdf:RDF
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:obi="http://purl.obolibrary.org/obo/"

xmlns:protege-dc="http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl#"
+ xmlns:ncbitax="http://purl.org/obo/owl/NCBITaxon#"
+ xmlns:daml="http://www.daml.org/2001/03/daml+oil#"
+ xmlns:obi_rel="http://purl.obolibrary.org/obo/obi/Relations.owl#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:obi_func="http://purl.obolibrary.org/obo/obi/OBI-Function.owl#"

xmlns:obi_owlfull="http://purl.obolibrary.org/obo/obi/obi-owl-full.owl#"
- xmlns:pato="http://purl.org/obo/owl/PATO#"
-
xmlns:obi_plan="http://purl.obolibrary.org/obo/obi/PlanAndPlannedProcess.owl#"
- xmlns:pro="http://purl.org/obo/owl/PRO#"
-
xmlns:obi_extd="http://purl.obolibrary.org/obo/obi/externalDerived.owl#"
-
xmlns:obi_annot="http://purl.obolibrary.org/obo/obi/AnnotationProperty.owl#"
- xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
- xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:obi_biomat="http://purl.obolibrary.org/obo/obi/Biomaterial.owl#"
+ xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:rotoo="http://purl.org/obo/owl/ro#"
- xmlns:dc="http://purl.org/dc/elements/1.1/"
- xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
- xmlns:go="http://purl.org/obo/owl/GO#"
- xmlns:obi_quality="http://purl.obolibrary.org/obo/obi/Quality.owl#"
- xmlns:bfo="http://www.ifomis.org/bfo/1.1#"
- xmlns:robfo="http://purl.org/obo/owl/ro_bfo_bridge/1.1#"
- xmlns:envo="http://purl.org/obo/owl/ENVO#"
- xmlns:owl="http://www.w3.org/2002/07/owl#"
- xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:obi_ext="http://purl.obolibrary.org/obo/obi/external.owl#"
- xmlns:ncbitax="http://purl.org/obo/owl/NCBITaxon#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+ xmlns:bfo="http://www.ifomis.org/bfo/1.1#"
+
xmlns:obi_annot="http://purl.obolibrary.org/obo/obi/AnnotationProperty.owl#"
+
xmlns:obi_plan="http://purl.obolibrary.org/obo/obi/PlanAndPlannedProcess.owl#"
+ xmlns:pato="http://purl.org/obo/owl/PATO#"
+ xmlns:cell="http://purl.org/obo/owl/CL#"
+
xmlns:obi_extd="http://purl.obolibrary.org/obo/obi/externalDerived.owl#"
+ xmlns:obi_role="http://purl.obolibrary.org/obo/obi/Role.owl#"

xmlns:obi_instr="http://purl.obolibrary.org/obo/obi/InstrumentAndPart.owl#"
- xmlns:obi_rel="http://purl.obolibrary.org/obo/obi/Relations.owl#"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:envo="http://purl.org/obo/owl/ENVO#"
+ xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
xmlns:caro="http://purl.org/obo/owl/CARO#"
- xmlns:so="http://purl.org/obo/owl/SO#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
- xmlns:cell="http://purl.org/obo/owl/CL#"
- xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+ xmlns:robfo="http://purl.org/obo/owl/ro_bfo_bridge/1.1#"
+ xmlns:obi_quality="http://purl.obolibrary.org/obo/obi/Quality.owl#"
+ xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
+ xmlns:rotoo="http://purl.org/obo/owl/ro#"
+ xmlns:pro="http://purl.org/obo/owl/PRO#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"

xmlns:obi_denrie="http://purl.obolibrary.org/obo/obi/DigitalEntityPlus.owl#"
- xmlns:obi_func="http://purl.obolibrary.org/obo/obi/OBI-Function.owl#"
- xmlns:obi_role="http://purl.obolibrary.org/obo/obi/Role.owl#"
- xmlns:obi="http://purl.obolibrary.org/obo/"
- xmlns:span="http://www.ifomis.org/bfo/1.1/span#"
- xmlns:daml="http://www.daml.org/2001/03/daml+oil#"
+ xmlns:so="http://purl.org/obo/owl/SO#"
+ xmlns:go="http://purl.org/obo/owl/GO#"
xmlns:chebi="http://purl.org/obo/owl/CHEBI#"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:span="http://www.ifomis.org/bfo/1.1/span#"
xml:base="http://purl.obolibrary.org/obo/obi/externalDerived.owl">
- <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/dev/dsRNA-recognition-and-signaling-via-TLR3-pathway-external-derived.owl"/>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006913">
- <obi:IAO_0000115 xml:lang="en">The directed movement of molecules
between the nucleus and the cytoplasm.</obi:IAO_0000115>
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/obi/externalDerived.owl"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070976">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051169"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">nucleocytoplasmic
transport</obi:IAO_0000111>
- <rdfs:label xml:lang="en">nucleocytoplasmic transport</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a Toll-Interleukin receptor (TIR) domain of a protein.
The TIR domain is an intracellular 200 residue domain that is found in the
Toll protein, the interleukin-1 receptor (IL-1R), and MyD88; it contains
three highly-conserved regions, and mediates protein-protein interactions
between the Toll-like receptors (TLRs) and signal-transduction
components.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">TIR domain binding</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">TIR domain binding</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071523">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0000060">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006461"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006886"/>
</rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">TIR domain-mediated complex
assembly</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">A process of protein complex assembly
in which the arrangement and bonding together of the set of components that
form the protein complex is mediated by a TIR domain
interaction.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">TIR domain-mediated complex
assembly</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">protein import into nucleus,
translocation</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">The vectorial transfer of a protein
from the cytoplasm into the nucleus, through the nuclear pore and across
the nuclear envelope.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">protein import into nucleus,
translocation</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043234">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065004">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032991"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071824"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Any macromolecular complex composed of
two or more polypeptide subunits, which may or may not be identical.
Protein complexes may have other associated non-protein prosthetic groups,
such as nucleotides, metal ions or other small molecules.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">protein complex</obi:IAO_0000111>
- <rdfs:label xml:lang="en">protein complex</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034622"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of proteins and DNA molecules to form a protein-DNA
complex.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">protein-DNA complex assembly</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">protein-DNA complex
assembly</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043623">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051649">
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">establishment of localization in
cell</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006461"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051234"/>
</rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">The directed movement of a substance or
cellular entity, such as a protein complex or organelle, to a specific
location within, or in the membrane of, a cell.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">establishment of localization in
cell</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019899">
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any enzyme.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">enzyme binding</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034622"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005515"/>
</rdfs:subClassOf>
+ <rdfs:label xml:lang="en">enzyme binding</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">cellular protein complex
assembly</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of a set of components to form a protein complex,
occurring at the level of an individual cell.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">cellular protein complex
assembly</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022618">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071822">
+ <obi:IAO_0000111 xml:lang="en">protein complex subunit
organization</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Any process by which macromolecules
aggregate, disaggregate, or are modified, resulting in the formation,
disassembly, or alteration of a protein complex.</obi:IAO_0000115>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">protein complex subunit
organization</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034622"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043933"/>
</rdfs:subClassOf>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022411">
+ <rdfs:label xml:lang="en">cellular component disassembly</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016043"/>
+ </rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of proteins and RNA molecules to form a ribonucleoprotein
complex.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">ribonucleoprotein complex
assembly</obi:IAO_0000111>
- <rdfs:label xml:lang="en">ribonucleoprotein complex
assembly</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">cellular component
disassembly</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">A cellular process that results in the
breakdown of a cellular component.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0000060">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071841">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006886"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071840"/>
</rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009987"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000111 xml:lang="en">cellular component organization or
biogenesis at cellular level</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">A process that is carried out at the
cellular level, and results in the biosynthesis of constituent
macromolecules, assembly, arrangement of constituent parts, or disassembly
of a cellular component.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">cellular component organization or
biogenesis at cellular level</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">protein import into nucleus,
translocation</obi:IAO_0000111>
- <rdfs:label xml:lang="en">protein import into nucleus,
translocation</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The vectorial transfer of a protein
from the cytoplasm into the nucleus, through the nuclear pore and across
the nuclear envelope.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051649">
- <obi:IAO_0000115 xml:lang="en">The directed movement of a substance or
cellular entity, such as a protein complex or organelle, to a specific
location within, or in the membrane of, a cell.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">establishment of localization in
cell</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016740">
+ <obi:IAO_0000111 xml:lang="en">transferase activity</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">transferase activity</rdfs:label>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051234"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003824"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">establishment of localization in
cell</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Catalysis of the transfer of a group,
e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or
other groups, from one compound (generally regarded as the donor) to
another compound (generally regarded as the acceptor). Transferase is the
systematic name for any enzyme of EC class 2.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071826">
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043933"/>
+ </rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">ribonucleoprotein complex subunit
organization</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">ribonucleoprotein complex subunit
organization</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Any process by which macromolecules
aggregate, disaggregate, or are modified, resulting in the formation,
disassembly, or alteration of a ribonucleoprotein complex.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006605">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045184">
+ <rdfs:label xml:lang="en">establishment of protein
localization</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">establishment of protein
localization</obi:IAO_0000111>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006886"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051234"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">protein targeting</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">The directed movement of a protein to a
specific location.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034621">
+ <rdfs:label xml:lang="en">cellular macromolecular complex subunit
organization</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">protein targeting</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The process of targeting specific
proteins to particular membrane-bounded subcellular organelles. Usually
requires an organelle specific protein sequence motif.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">cellular macromolecular complex subunit
organization</obi:IAO_0000111>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071842"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">Any process carried out at the cellular
level by which macromolecules aggregate, disaggregate, or are modified,
resulting in the formation, disassembly, or alteration of a macromolecular
complex.</obi:IAO_0000115>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043933"/>
+ </rdfs:subClassOf>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046907">
- <obi:IAO_0000111 xml:lang="en">intracellular
transport</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">The directed movement of substances
within a cell.</obi:IAO_0000115>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0051649"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022618">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006810"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034622"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">intracellular transport</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0071826"/>
+ <obi:IAO_0000111 xml:lang="en">ribonucleoprotein complex
assembly</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of proteins and RNA molecules to form a ribonucleoprotein
complex.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">ribonucleoprotein complex
assembly</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006886">
- <obi:IAO_0000115 xml:lang="en">The directed movement of proteins in a
cell, including the movement of proteins between specific compartments or
structures within a cell, such as organelles of a eukaryotic
cell.</obi:IAO_0000115>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0046907"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003676">
+ <rdfs:label xml:lang="en">nucleic acid binding</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any nucleic acid.</obi:IAO_0000115>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0015031"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005488"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">intracellular protein transport</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">intracellular protein
transport</obi:IAO_0000111>
+ <obi:IAO_0000111 xml:lang="en">nucleic acid binding</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045184">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043130">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The directed movement of a protein to a
specific location.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">establishment of protein
localization</obi:IAO_0000111>
- <rdfs:label xml:lang="en">establishment of protein
localization</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051234"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032182"/>
</rdfs:subClassOf>
+ <rdfs:label xml:lang="en">ubiquitin binding</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently and non-covalently with ubiquitin, a protein that when
covalently bound to other cellular proteins marks them for proteolytic
degradation.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">ubiquitin binding</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005488">
- <rdfs:label xml:lang="en">binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">binding</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046982">
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046983"/>
+ </rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a nonidentical protein to form a
heterodimer.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">protein heterodimerization
activity</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">protein heterodimerization
activity</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046907">
+ <obi:IAO_0000115 xml:lang="en">The directed movement of substances
within a cell.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">intracellular transport</rdfs:label>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">intracellular
transport</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0051649"/>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003674"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006810"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">The selective, non-covalent, often
stoichiometric, interaction of a molecule with one or more specific sites
on another molecule.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065007">
- <obi:IAO_0000111 xml:lang="en">biological regulation</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of any biological process, quality or
function.</obi:IAO_0000115>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032984">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043933"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">biological regulation</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">macromolecular complex
disassembly</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0022411"/>
+ <rdfs:label xml:lang="en">macromolecular complex
disassembly</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">The disaggregation of a macromolecular
complex into its constituent components.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043393">
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of protein binding.</obi:IAO_0000115>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">regulation of protein binding</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">regulation of protein
binding</obi:IAO_0000111>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051098"/>
+ </rdfs:subClassOf>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150">
+ <obi:IAO_0000111 xml:lang="en">biological_process</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Any process specifically pertinent to
the functioning of integrated living units: cells, tissues, organs, and
organisms. A process is a collection of molecular events with a defined
beginning and end.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">biological_process</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006461">
<obi:IAO_0000111 xml:lang="en">protein complex
assembly</obi:IAO_0000111>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of a set of components to form a protein
complex.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">protein complex assembly</rdfs:label>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0071822"/>
<rdfs:subClassOf>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065003"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">protein complex assembly</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of a set of components to form a protein
complex.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046983">
- <obi:IAO_0000111 xml:lang="en">protein dimerization
activity</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032182">
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a small conjugating protein such as ubiquitin or a
ubiquitin-like protein.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">small conjugating protein
binding</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">small conjugating protein
binding</rdfs:label>
<rdfs:subClassOf>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005515"/>
</rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">The formation of a protein dimer, a
macromolecular structure consists of two noncovalently associated identical
or nonidentical subunits.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">protein dimerization activity</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043241">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006913">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032984"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051169"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">protein complex disassembly</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The disaggregation of a protein complex
into its constituent components. Protein complexes may have other
associated non-protein prosthetic groups, such as nucleic acids, metal ions
or carbohydrate groups.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">protein complex
disassembly</obi:IAO_0000111>
+ <obi:IAO_0000111 xml:lang="en">nucleocytoplasmic
transport</obi:IAO_0000111>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">The directed movement of molecules
between the nucleus and the cytoplasm.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">nucleocytoplasmic transport</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005048">
- <rdfs:label xml:lang="en">signal sequence binding</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071842">
+ <obi:IAO_0000111 xml:lang="en">cellular component organization at
cellular level</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042277"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016043"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">signal sequence
binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a signal sequence, a specific peptide sequence found on
protein precursors or mature proteins that dictates where the mature
protein is localized.</obi:IAO_0000115>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0071841"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">A process that is carried out at the
cellular level and results in the assembly, arrangement of constituent
parts, or disassembly of a cellular component.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">cellular component organization at cellular
level</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043497">
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051098">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043393"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065009"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">regulation of protein
heterodimerization activity</obi:IAO_0000111>
- <rdfs:label xml:lang="en">regulation of protein heterodimerization
activity</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of protein heterodimerization, interacting
selectively with a nonidentical protein to form a
heterodimer.</obi:IAO_0000115>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">regulation of binding</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">regulation of binding</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of binding, the selective interaction of a
molecule with one or more specific sites on another
molecule.</obi:IAO_0000115>
</owl:Class>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043933">
- <obi:IAO_0000115 xml:lang="en">Any process by which macromolecules
aggregate, disaggregate, or are modified, resulting in the formation,
disassembly, or alteration of a macromolecular complex.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">macromolecular complex subunit
organization</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">macromolecular complex subunit
organization</obi:IAO_0000111>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016043"/>
</rdfs:subClassOf>
+ <obi:IAO_0000115 xml:lang="en">Any process in which macromolecules
aggregate, disaggregate, or are modified, resulting in the formation,
disassembly, or alteration of a macromolecular complex.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">macromolecular complex subunit
organization</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042277">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">macromolecular complex subunit
organization</obi:IAO_0000111>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005488"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000111 xml:lang="en">peptide binding</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">peptide binding</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with peptides, any of a group of organic compounds
comprising two or more amino acids linked by peptide
bonds.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042803">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065009">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042802"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065007"/>
</rdfs:subClassOf>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0046983"/>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of a molecular function, an elemental biological
activity occurring at the molecular level, such as catalysis or
binding.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">protein homodimerization
activity</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with an identical protein to form a
homodimer.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">protein homodimerization
activity</rdfs:label>
+ <rdfs:label xml:lang="en">regulation of molecular function</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">regulation of molecular
function</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071523">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0006461"/>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">TIR domain-mediated complex
assembly</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">A process of protein complex assembly
in which the arrangement and bonding together of the set of components that
form the protein complex is mediated by a TIR domain
interaction.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">TIR domain-mediated complex
assembly</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034622">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034621"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071844"/>
</rdfs:subClassOf>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0034621"/>
+ <obi:IAO_0000111 xml:lang="en">cellular macromolecular complex
assembly</obi:IAO_0000111>
<rdfs:subClassOf>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065003"/>
</rdfs:subClassOf>
+ <rdfs:label xml:lang="en">cellular macromolecular complex
assembly</rdfs:label>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of a set of macromolecules to form a complex, carried out
at the cellular level.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">cellular macromolecular complex
assembly</obi:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051234">
+ <rdfs:label xml:lang="en">establishment of localization</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">establishment of
localization</obi:IAO_0000111>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">cellular macromolecular complex
assembly</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">The directed movement of a cell,
substance or cellular entity, such as a protein complex or organelle, to a
specific location.</obi:IAO_0000115>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003725">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0015031">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0045184"/>
+ <obi:IAO_0000115 xml:lang="en">The directed movement of proteins into,
out of or within a cell, or between cells, by means of some agent such as a
transporter or pore.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">protein transport</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003723"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006810"/>
</rdfs:subClassOf>
+ <obi:IAO_0000111 xml:lang="en">protein transport</obi:IAO_0000111>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">double-stranded RNA binding</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with double-stranded RNA.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">double-stranded RNA
binding</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042277">
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with peptides, any of a group of organic compounds
comprising two or more amino acids linked by peptide
bonds.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">peptide binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">peptide binding</obi:IAO_0000111>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0005488"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008139">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0017038">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0015031"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005048"/>
</rdfs:subClassOf>
- <rdfs:label xml:lang="en">protein import</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The directed movement of proteins into
a cell or organelle.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">protein import</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a nuclear localization sequence, a specific peptide
sequence that acts as a signal to localize the protein within the
nucleus.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">nuclear localization sequence
binding</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">nuclear localization sequence
binding</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051170">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006605">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0006913"/>
- <rdfs:label xml:lang="en">nuclear import</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The directed movement of substances
into the nucleus.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">nuclear import</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016043">
- <rdfs:label xml:lang="en">cellular component organization</rdfs:label>
+ <rdfs:label xml:lang="en">protein targeting</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">protein targeting</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006886"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">cellular component
organization</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">A process that is carried out at the
cellular level which results in the assembly, arrangement of constituent
parts, or disassembly of a cellular component.</obi:IAO_0000115>
+ <obi:IAO_0000115 xml:lang="en">The process of targeting specific
proteins to particular membrane-bounded subcellular organelles. Usually
requires an organelle specific protein sequence motif.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032991">
+ <rdfs:label xml:lang="en">macromolecular complex</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">macromolecular complex</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">A stable assembly of two or more
macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in
which the constituent parts function together.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005575"/>
+ </rdfs:subClassOf>
</owl:Class>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016301">
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:subClassOf>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016772"/>
</rdfs:subClassOf>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
<rdfs:label xml:lang="en">kinase activity</rdfs:label>
<obi:IAO_0000115 xml:lang="en">Catalysis of the transfer of a
phosphate group, usually from ATP, to a substrate
molecule.</obi:IAO_0000115>
<obi:IAO_0000111 xml:lang="en">kinase activity</obi:IAO_0000111>
</owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003725">
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003723"/>
+ </rdfs:subClassOf>
+ <obi:IAO_0000111 xml:lang="en">double-stranded RNA
binding</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">double-stranded RNA binding</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with double-stranded RNA.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005048">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0042277"/>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">signal sequence binding</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">signal sequence
binding</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a signal sequence, a specific peptide sequence found on
protein precursors or mature proteins that dictates where the mature
protein is localized.</obi:IAO_0000115>
+ </owl:Class>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005575">
<obi:IAO_0000111 xml:lang="en">cellular_component</obi:IAO_0000111>
<obi:IAO_0000115 xml:lang="en">The part of a cell or its extracellular
environment in which a gene product is located. A gene product may be
located in one or more parts of a cell and its location may be as specific
as a particular macromolecular complex, that is, a stable, persistent
association of macromolecules that function together.</obi:IAO_0000115>
<rdfs:label xml:lang="en">cellular_component</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003674">
- <obi:IAO_0000111 xml:lang="en">molecular_function</obi:IAO_0000111>
- <rdfs:label xml:lang="en">molecular_function</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Elemental activities, such as catalysis
or binding, describing the actions of a gene product at the molecular
level. A given gene product may exhibit one or more molecular
functions.</obi:IAO_0000115>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0070976">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904"/>
- </rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019900">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">TIR domain binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">TIR domain binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a Toll-Interleukin receptor (TIR) domain of a protein.
The TIR domain is an intracellular 200 residue domain that is found in the
Toll protein, the interleukin-1 receptor (IL-1R), and MyD88; it contains
three highly-conserved regions, and mediates protein-protein interactions
between the Toll-like receptors (TLRs) and signal-transduction
components.</obi:IAO_0000115>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0019899"/>
+ <rdfs:label xml:lang="en">kinase binding</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">kinase binding</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a kinase, any enzyme that catalyzes the transfer of a
phosphate group.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006810">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043623">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051234"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">transport</obi:IAO_0000111>
- <rdfs:label xml:lang="en">transport</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The directed movement of substances
(such as macromolecules, small molecules, ions) into, out of, within or
between cells, or within a multicellular organism by means of some external
agent such as a transporter or pore.</obi:IAO_0000115>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0034622"/>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0006461"/>
+ <obi:IAO_0000111 xml:lang="en">cellular protein complex
assembly</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">cellular protein complex
assembly</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of a set of components to form a protein complex,
occurring at the level of an individual cell.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006607">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071824">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0043933"/>
+ <rdfs:label xml:lang="en">protein-DNA complex subunit
organization</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006606"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">NLS-bearing substrate import into
nucleus</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">The directed movement of a protein
bearing a nuclear localization signal (NLS) from the cytoplasm into the
nucleus, across the nuclear membrane.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">NLS-bearing substrate import into
nucleus</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">protein-DNA complex subunit
organization</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Any process by which macromolecules
aggregate, disaggregate, or are modified, resulting in the formation,
disassembly, or alteration of a protein-DNA complex.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051234">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005515">
+ <obi:IAO_0000111 xml:lang="en">protein binding</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005488"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">establishment of
localization</obi:IAO_0000111>
- <rdfs:label xml:lang="en">establishment of localization</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The directed movement of a cell,
substance or cellular entity, such as a protein complex or organelle, to a
specific location.</obi:IAO_0000115>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any protein or protein complex (a complex of two or
more proteins that may include other nonprotein
molecules).</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">protein binding</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022411">
- <obi:IAO_0000115 xml:lang="en">A cellular process that results in the
breakdown of a part of the cell.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">cellular component
disassembly</obi:IAO_0000111>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0016043"/>
- <rdfs:label xml:lang="en">cellular component disassembly</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043496">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0043393"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of protein homodimerization, interacting
selectively with an identical protein to form a homodimer.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">regulation of protein homodimerization
activity</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">regulation of protein homodimerization
activity</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042802">
- <rdfs:label xml:lang="en">identical protein binding</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with an identical protein or proteins.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">identical protein
binding</obi:IAO_0000111>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005515"/>
- </rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0017038">
+ <rdfs:label xml:lang="en">protein import</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">The directed movement of proteins into
a cell or organelle.</obi:IAO_0000115>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0015031"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000111 xml:lang="en">protein import</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065003">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003674">
+ <obi:IAO_0000111 xml:lang="en">molecular_function</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Elemental activities, such as catalysis
or binding, describing the actions of a gene product at the molecular
level. A given gene product may exhibit one or more molecular
functions.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">molecular_function</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003824">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0043933"/>
- <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of a set of macromolecules to form a
complex.</obi:IAO_0000115>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022607"/>
- </rdfs:subClassOf>
- <rdfs:label xml:lang="en">macromolecular complex assembly</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">macromolecular complex
assembly</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">catalytic activity</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">catalytic activity</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Catalysis of a biochemical reaction at
physiological temperatures. In biologically catalyzed reactions, the
reactants are known as substrates, and the catalysts are naturally
occurring macromolecular substances known as enzymes. Enzymes possess
specific binding sites for substrates, and are usually composed wholly or
largely of protein, but RNA that has catalytic activity (ribozyme) is often
also regarded as enzymatic.</obi:IAO_0000115>
</owl:Class>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006606">
- <rdfs:label xml:lang="en">protein import into nucleus</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The directed movement of a protein from
the cytoplasm to the nucleus.</obi:IAO_0000115>
<rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0017038"/>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">protein import into
nucleus</obi:IAO_0000111>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0051170"/>
<rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0006605"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043130">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">The directed movement of a protein from
the cytoplasm to the nucleus.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">protein import into
nucleus</obi:IAO_0000111>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032182"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051170"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">ubiquitin binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently and non-covalently with ubiquitin, a protein that when
covalently bound to other cellular proteins marks them for proteolytic
degradation.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">ubiquitin binding</rdfs:label>
+ <rdfs:label xml:lang="en">protein import into nucleus</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065004">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006886">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0034622"/>
- <obi:IAO_0000111 xml:lang="en">protein-DNA complex
assembly</obi:IAO_0000111>
- <rdfs:label xml:lang="en">protein-DNA complex assembly</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of proteins and DNA molecules to form a protein-DNA
complex.</obi:IAO_0000115>
+ <obi:IAO_0000115 xml:lang="en">The directed movement of proteins in a
cell, including the movement of proteins between specific compartments or
structures within a cell, such as organelles of a eukaryotic
cell.</obi:IAO_0000115>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0046907"/>
+ <rdfs:label xml:lang="en">intracellular protein transport</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">intracellular protein
transport</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0015031"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150">
- <obi:IAO_0000111 xml:lang="en">biological_process</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Any process specifically pertinent to
the functioning of integrated living units: cells, tissues, organs, and
organisms. A process is a collection of molecular events with a defined
beginning and end.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">biological_process</rdfs:label>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009987">
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
- <rdfs:label xml:lang="en">cellular process</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">cellular process</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904">
+ <rdfs:label xml:lang="en">protein domain specific binding</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a specific domain of a protein.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Any process that is carried out at the
cellular level, but not necessarily restricted to a single cell. For
example, cell communication occurs among more than one cell, but occurs at
the cellular level.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">protein domain specific
binding</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0005515"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051169">
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0046907"/>
- <obi:IAO_0000115 xml:lang="en">The directed movement of substances
into, out of, or within the nucleus.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">nuclear transport</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">nuclear transport</obi:IAO_0000111>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043393">
- <obi:IAO_0000111 xml:lang="en">regulation of protein
binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of protein binding.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">regulation of protein binding</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042803">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051098"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046983"/>
</rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051098">
- <obi:IAO_0000111 xml:lang="en">regulation of binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of binding, the selective interaction of a
molecule with one or more specific sites on another
molecule.</obi:IAO_0000115>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">regulation of binding</rdfs:label>
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065009"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042802"/>
</rdfs:subClassOf>
+ <rdfs:label xml:lang="en">protein homodimerization
activity</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">protein homodimerization
activity</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with an identical protein to form a
homodimer.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019900">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043234">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0032991"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019899"/>
- </rdfs:subClassOf>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a kinase, any enzyme that catalyzes the transfer of a
phosphate group.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">kinase binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">kinase binding</obi:IAO_0000111>
+ <obi:IAO_0000111 xml:lang="en">protein complex</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Any macromolecular complex composed of
two or more polypeptide subunits, which may or may not be identical.
Protein complexes may have other associated non-protein prosthetic groups,
such as nucleotides, metal ions or other small molecules.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">protein complex</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046982">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006810">
+ <obi:IAO_0000115 xml:lang="en">The directed movement of substances
(such as macromolecules, small molecules, ions) into, out of or within a
cell, or between cells, or within a multicellular organism by means of some
agent such as a transporter or pore.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">transport</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0046983"/>
- <rdfs:label xml:lang="en">protein heterodimerization
activity</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a nonidentical protein to form a
heterodimer.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">protein heterodimerization
activity</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0051234"/>
+ <obi:IAO_0000111 xml:lang="en">transport</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003676">
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any nucleic acid.</obi:IAO_0000115>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065003">
+ <obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of a set of macromolecules to form a
complex.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">macromolecular complex assembly</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022607"/>
+ </rdfs:subClassOf>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0005488"/>
- <rdfs:label xml:lang="en">nucleic acid binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">nucleic acid binding</obi:IAO_0000111>
+ <obi:IAO_0000111 xml:lang="en">macromolecular complex
assembly</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0043933"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032991">
- <obi:IAO_0000115 xml:lang="en">A stable assembly of two or more
macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in
which the constituent parts function together.</obi:IAO_0000115>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0005575"/>
- <obi:IAO_0000111 xml:lang="en">macromolecular complex</obi:IAO_0000111>
- <rdfs:label xml:lang="en">macromolecular complex</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043241">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0032984"/>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0071822"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obi:IAO_0000115 xml:lang="en">The disaggregation of a protein complex
into its constituent components. Protein complexes may have other
associated non-protein prosthetic groups, such as nucleic acids, metal ions
or carbohydrate groups.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">protein complex
disassembly</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">protein complex disassembly</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065009">
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0065007"/>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of a molecular function, an elemental biological
activity occurring at the molecular level, such as catalysis or
binding.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">regulation of molecular
function</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071840">
+ <rdfs:label xml:lang="en">cellular component organization or
biogenesis</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">A process that results in the
biosynthesis of constituent macromolecules, assembly, arrangement of
constituent parts, or disassembly of a cellular component.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">regulation of molecular function</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">cellular component organization or
biogenesis</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032984">
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0043933"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0022411"/>
- <obi:IAO_0000115 xml:lang="en">The disaggregation of a macromolecular
complex into its constituent components.</obi:IAO_0000115>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0065007">
+ <obi:IAO_0000111 xml:lang="en">biological regulation</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">macromolecular complex
disassembly</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">macromolecular complex
disassembly</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of any biological process, quality or
function.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">biological regulation</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003723">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016043">
+ <obi:IAO_0000111 xml:lang="en">cellular component
organization</obi:IAO_0000111>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0003676"/>
- <rdfs:label xml:lang="en">RNA binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">RNA binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with an RNA molecule or a portion thereof.</obi:IAO_0000115>
+ <obi:IAO_0000115 xml:lang="en">A process that results in the assembly,
arrangement of constituent parts, or disassembly of a cellular
component.</obi:IAO_0000115>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0071840"/>
+ <rdfs:label xml:lang="en">cellular component organization</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019904">
- <rdfs:label xml:lang="en">protein domain specific binding</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0009987">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0008150"/>
+ <obi:IAO_0000111 xml:lang="en">cellular process</obi:IAO_0000111>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a specific domain of a protein.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">cellular process</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Any process that is carried out at the
cellular level, but not necessarily restricted to a single cell. For
example, cell communication occurs among more than one cell, but occurs at
the cellular level.</obi:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0071844">
<rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005515"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022607"/>
</rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">protein domain specific
binding</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0071842"/>
+ <obi:IAO_0000115 xml:lang="en">A process that is carried out at the
cellular level and results in the aggregation, arrangement and bonding
together of a cellular component.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">cellular component assembly at cellular
level</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">cellular component assembly at cellular
level</obi:IAO_0000111>
+ <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043496">
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0043393"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005488">
+ <obi:IAO_0000111 xml:lang="en">binding</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
+ <obi:IAO_0000115 xml:lang="en">The selective, non-covalent, often
stoichiometric, interaction of a molecule with one or more specific sites
on another molecule.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">binding</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">regulation of protein homodimerization
activity</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of protein homodimerization, interacting
selectively with an identical protein to form a homodimer.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">regulation of protein homodimerization
activity</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0005515">
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any protein or protein complex (a complex of two or
more proteins that may include other nonprotein
molecules).</obi:IAO_0000115>
- <rdfs:label xml:lang="en">protein binding</rdfs:label>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0005488"/>
- <obi:IAO_0000111 xml:lang="en">protein binding</obi:IAO_0000111>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043497">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0043393"/>
+ <obi:IAO_0000115 xml:lang="en">Any process that modulates the
frequency, rate or extent of protein heterodimerization, interacting
selectively with a nonidentical protein to form a
heterodimer.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">regulation of protein
heterodimerization activity</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">regulation of protein heterodimerization
activity</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0034621">
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0043933"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0009987"/>
- <obi:IAO_0000115 xml:lang="en">Any process carried out at the cellular
level by which macromolecules aggregate, disaggregate, or are modified,
resulting in the formation, disassembly, or alteration of a macromolecular
complex.</obi:IAO_0000115>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051170">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">cellular macromolecular complex subunit
organization</obi:IAO_0000111>
- <rdfs:label xml:lang="en">cellular macromolecular complex subunit
organization</rdfs:label>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0006913"/>
+ <rdfs:label xml:lang="en">nuclear import</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">nuclear import</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">The directed movement of substances
into the nucleus.</obi:IAO_0000115>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016740">
- <rdfs:subClassOf>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003824"/>
- </rdfs:subClassOf>
- <obi:IAO_0000111 xml:lang="en">transferase activity</obi:IAO_0000111>
- <rdfs:label xml:lang="en">transferase activity</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006607">
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0006606"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Catalysis of the transfer of a group,
e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or
other groups, from one compound (generally regarded as the donor) to
another compound (generally regarded as the acceptor). Transferase is the
systematic name for any enzyme of EC class 2.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">NLS-bearing substrate import into
nucleus</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">The directed movement of a protein
bearing a nuclear localization signal (NLS) from the cytoplasm into the
nucleus, across the nuclear membrane.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">NLS-bearing substrate import into
nucleus</rdfs:label>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032182">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042802">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">small conjugating protein
binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently and non-covalently with a small conjugating protein such as
ubiquitin or a ubiquitin-like protein.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">small conjugating protein
binding</rdfs:label>
+ <rdfs:label xml:lang="en">identical protein binding</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">identical protein
binding</obi:IAO_0000111>
<rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0005515"/>
- </owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016772">
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0016740"/>
- <rdfs:label xml:lang="en">transferase activity, transferring
phosphorus-containing groups</rdfs:label>
- <obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000111 xml:lang="en">transferase activity, transferring
phosphorus-containing groups</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Catalysis of the transfer of a
phosphorus-containing group from one compound (donor) to another
(acceptor).</obi:IAO_0000115>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with an identical protein or proteins.</obi:IAO_0000115>
</owl:Class>
<owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0022607">
- <obi:IAO_0000111 xml:lang="en">cellular component
assembly</obi:IAO_0000111>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">cellular component assembly</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0016043"/>
<obi:IAO_0000115 xml:lang="en">The aggregation, arrangement and
bonding together of a cellular component.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">cellular component assembly</rdfs:label>
+ <obi:IAO_0000111 xml:lang="en">cellular component
assembly</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019899">
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0005515"/>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016772">
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:label xml:lang="en">enzyme binding</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">enzyme binding</obi:IAO_0000111>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with any enzyme.</obi:IAO_0000115>
+ <rdfs:label xml:lang="en">transferase activity, transferring
phosphorus-containing groups</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">Catalysis of the transfer of a
phosphorus-containing group from one compound (donor) to another
(acceptor).</obi:IAO_0000115>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0016740"/>
+ <obi:IAO_0000111 xml:lang="en">transferase activity, transferring
phosphorus-containing groups</obi:IAO_0000111>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008139">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0046983">
+ <rdfs:label xml:lang="en">protein dimerization activity</rdfs:label>
+ <obi:IAO_0000115 xml:lang="en">The formation of a protein dimer, a
macromolecular structure consists of two noncovalently associated identical
or nonidentical subunits.</obi:IAO_0000115>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0005048"/>
- <rdfs:label xml:lang="en">nuclear localization sequence
binding</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with a nuclear localization sequence, a specific peptide
sequence that acts as a signal to localize the protein within the
nucleus.</obi:IAO_0000115>
- <obi:IAO_0000111 xml:lang="en">nuclear localization sequence
binding</obi:IAO_0000111>
+ <obi:IAO_0000111 xml:lang="en">protein dimerization
activity</obi:IAO_0000111>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0005515"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0015031">
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0006810"/>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0045184"/>
- <obi:IAO_0000111 xml:lang="en">protein transport</obi:IAO_0000111>
- <rdfs:label xml:lang="en">protein transport</rdfs:label>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003723">
+ <rdfs:label xml:lang="en">RNA binding</rdfs:label>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">The directed movement of proteins into,
out of, within or between cells by means of some external agent such as a
transporter or pore.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">RNA binding</obi:IAO_0000111>
+ <obi:IAO_0000115 xml:lang="en">Interacting selectively and
non-covalently with an RNA molecule or a portion thereof.</obi:IAO_0000115>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0003676"/>
</owl:Class>
- <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0003824">
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0051169">
+ <obi:IAO_0000115 xml:lang="en">The directed movement of substances
into, out of, or within the nucleus.</obi:IAO_0000115>
+ <obi:IAO_0000111 xml:lang="en">nuclear transport</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">nuclear transport</rdfs:label>
+ <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0046907"/>
<obi:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
- <obi:IAO_0000115 xml:lang="en">Catalysis of a biochemical reaction at
physiological temperatures. In biologically catalyzed reactions, the
reactants are known as substrates, and the catalysts are naturally
occurring macromolecular substances known as enzymes. Enzymes possess
specific binding sites for substrates, and are usually composed wholly or
largely of protein, but RNA that has catalytic activity (ribozyme) is often
also regarded as enzymatic.</obi:IAO_0000115>
- <rdfs:label xml:lang="en">catalytic activity</rdfs:label>
- <obi:IAO_0000111 xml:lang="en">catalytic activity</obi:IAO_0000111>
- <rdfs:subClassOf rdf:resource="http://purl.org/obo/owl/GO#GO_0003674"/>
</owl:Class>
- <rdf:Description rdf:about="http://purl.org/obo/owl/PRO#PRO_000001778">
- <obi:IAO_0000111 xml:lang="en">inhibitor of nuclear factor kappa-b
kinase subunit epsilon</obi:IAO_0000111>
- <rdfs:label xml:lang="en">inhibitor of nuclear factor kappa-b kinase
subunit epsilon</rdfs:label>
- <obi:IAO_0000115 xml:lang="en">An IKK-related kinase that is a
translation product of the IKBKE gene or a 1:1 ortholog thereof. Members of
this class are part of the PMA-inducible IkappaB kinase
complex.</obi:IAO_0000115>
+ <rdf:Description rdf:about="http://purl.org/obo/owl/PRO#PRO_000001154">
+ <obi:IAO_0000111 xml:lang="en">toll-like receptor 3</obi:IAO_0000111>
+ <rdfs:label xml:lang="en">toll-like receptor 3</rdfs:label>
***The diff for this file has been truncated for email.***

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