[infectious-disease-ontology] r359 committed - BFO new PURLs in place. Need to review relations

1 view

Skip to first unread message

infectious-di...@googlecode.com

unread,

Nov 15, 2013, 2:55:09 AM11/15/13

to ido-t...@googlegroups.com

Revision: 359
Author: alanruttenberg
Date: Fri Nov 15 07:54:42 2013 UTC
Log: BFO new PURLs in place. Need to review relations
http://code.google.com/p/infectious-disease-ontology/source/detail?r=359

Modified:
/trunk/src/ontology/ido-core/ido-base.owl
/trunk/src/ontology/ido-core/ido-external-by-hand.owl
/trunk/src/ontology/ido-core/ido-external.owl
/trunk/src/ontology/ido-core/ido-main.owl

=======================================
--- /trunk/src/ontology/ido-core/ido-base.owl Fri Nov 15 06:37:40 2013 UTC
+++ /trunk/src/ontology/ido-core/ido-base.owl Fri Nov 15 07:54:42 2013 UTC
@@ -31,10 +31,10 @@

<rdfs:seeAlso>http://www.infectiousdiseaseontology.org/Home.html</rdfs:seeAlso>
<dc:creator>Alexander Diehl</dc:creator>
<owl:imports
rdf:resource="http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl"/>
- <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/ontology-metadata.owl"/>
+ <owl:imports
rdf:resource="https://information-artifact-ontology.googlecode.com/svn/releases/2012-07-11-BFO2/ontology-metadata.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/ido-external-derived.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/ido-external.owl"/>
- <owl:imports rdf:resource="http://www.ifomis.org/bfo/1.1"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
</owl:Ontology>

@@ -132,7 +132,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000400">
<rdfs:label xml:lang="en">symbiont role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<rdfs:comment>The role is realized in symbiosis.</rdfs:comment>
@@ -202,7 +202,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000405">
<rdfs:label xml:lang="en">pathogen role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -376,7 +376,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000417">
<rdfs:label xml:lang="en">infectious agent transporter
role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role borne by a material entity
in virtue of the fact that an infectious agent is located in or on the
entity and the entity has the capability to transfer (either actively or
passively) the infectious agent from one location to another.
</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -471,7 +471,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000424">
<rdfs:label xml:lang="en">reservoir of infectious agent
role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role borne by a material entity
in virtue of the fact that it is a habitat in which infectious agents can
persist and multiply and from which they can be transmitted in virtue of
prevailing practices of potential hosts.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -486,7 +486,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000425">
<rdfs:label xml:lang="en">virulence factor disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>The virulence factor disposition is typically
realized in processes that improve survival of the pathogen in a host,
increase the likelihood of transmission to a host, or cause pathological
processes in a host.</rdfs:comment>
@@ -500,7 +500,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000426">
<rdfs:label xml:lang="en">toxin disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A disposition to cause I)
malfunction of cells, ii) damage to extracellular matrix, or iii) damage of
cells to a degree that can result in cell death.</obo:IAO_0000115>
@@ -553,7 +553,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000430">
<rdfs:label xml:lang="en">infectious agent portal of entry
role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role borne by an anatomical
entity in virtue of the fact that it serves as the site through which an
infectious agent enters a host.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -567,7 +567,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000431">
<rdfs:label xml:lang="en">infectious agent portal of exit
role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:comment>The role is realized in a process by which an
infectious agent exists a host.</rdfs:comment>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -581,7 +581,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000432">
<rdfs:label xml:lang="en">disinfectant role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<rdfs:comment>The role is realized in the killing and/or growth
inhibition of microorganisms on the non-living entity.</rdfs:comment>
<obo:IAO_0000115 xml:lang="en">A role borne by a material entity
in virtue of the fact that it has an antimicrobial disposition and is
applied to a non-living entity. </obo:IAO_0000115>
@@ -595,7 +595,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000433">
<rdfs:label xml:lang="en">antiseptic role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:comment>The role is realized in the killing and/or growth
inhibition of microorganisms on the anatomical entity. </rdfs:comment>
<obo:IAO_0000115 xml:lang="en">A role borne by a material entity
in virtue of the fact that it has an antimicrobial disposition and is
applied to an anatomical entity of a living organism. </obo:IAO_0000115>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -609,7 +609,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000434">
<rdfs:label xml:lang="en">primary infection role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -623,7 +623,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000435">
<rdfs:label xml:lang="en">secondary infection role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:comment>The role is realized in a process by which the
infectious disorder is established in the host.</rdfs:comment>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A role borne by an infectious
disorder in virtue of the fact that (1) the host has at least two distinct
infectious disorders, where neither arose from the other through
metastasis, (2) at the time the infectious disorder was established in the
host, the host had a primary infectious disorder, and (3) establishment of
the infectious disorder occurs because of increased susceptibility to
infectious disorders conferred by the primary infectious
disorder.</obo:IAO_0000115>
@@ -652,7 +652,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000437">
<rdfs:label xml:lang="en">adhesion disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<rdfs:comment>The disposition is realized in an adherence to host
process.</rdfs:comment>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -666,7 +666,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000438">
<rdfs:label xml:lang="en">invasion disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A disposition borne by a biological
macromolecule that is the disposition to facilitate breach of host
epithelial barriers or entry into and survival in host
cells.</obo:IAO_0000115>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -680,7 +680,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000439">
<rdfs:label xml:lang="en">antimicrobial disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000115 xml:lang="en">A disposition to kill or inhibit
the development or reproduction of microorganisms.</obo:IAO_0000115>
<rdfs:comment>The disposition is realized in the killing or
inhibition of microorganisms.</rdfs:comment>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -695,7 +695,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000440">
<rdfs:label xml:lang="en">antiviral disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A disposition to kill or inhibit
the lifecycle of viruses.</obo:IAO_0000115>
@@ -708,7 +708,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000441">
<rdfs:label xml:lang="en">antifungal disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A disposition to kill or inhibit
the development or reproduction of fungal organisms.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -721,7 +721,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000442">
<rdfs:label xml:lang="en">antibacterial disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -735,7 +735,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000443">
<rdfs:label xml:lang="en">antiparasitic disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -749,7 +749,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000444">
<rdfs:label xml:lang="en">protective resistance</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A disposition that inheres in a
material entity in virtue of the fact that the entity has a part (e.g. a
gene product), which itself has a disposition to mitigate damage to the
entity.</obo:IAO_0000115>
@@ -833,7 +833,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000450">
<rdfs:label xml:lang="en">pathogenic disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<rdfs:comment>The use of 'initiates' is intended to convey
that a pathogenic disposition is realized when processes resulting in a
disorder begin because of some action on the part of the bearer of the
disposition. By this interpretation of 'initiates',
disorder-causing entities such as glass, UV light, and toxins do not have a
pathogenic disposition.</rdfs:comment>
<obo:IAO_0000115 xml:lang="en">A disposition to initiate processes
that result in a disorder.</obo:IAO_0000115>
@@ -849,7 +849,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000451">
<rdfs:label xml:lang="en">invasive disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A disposition borne by an
infectious agent that is the disposition to penetrate the epithelial
barriers of an organism of another Species.</obo:IAO_0000115>
@@ -904,7 +904,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000455">
<rdfs:label xml:lang="en">collective disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A disposition that inheres in a
collection of entities in virtue of the individual dispositions of the
constituents of that collection. </obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -945,7 +945,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000458">
<rdfs:label xml:lang="en">contagiousness</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<rdfs:comment>Highly contagious infections, those with a
relatively high likelihood of spread, are referred to as contagious and are
those for which spread is likely as a result of day-to-day activities of
the host.</rdfs:comment>
@@ -999,7 +999,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000463">
<rdfs:label xml:lang="en">infectious agent
transmissibility</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<rdfs:comment>The transmissibility quality varies with both the
type of organism being transmitted and the type of organism to which
transmission is happening.</rdfs:comment>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -1013,7 +1013,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000464">
<rdfs:label xml:lang="en">infectivity</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<rdfs:comment>This quality is measured by the proportion of
exposed who become infected.</rdfs:comment>
@@ -1027,7 +1027,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000466">
<rdfs:label xml:lang="en">virulence</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<rdfs:comment>This quality is measured by the proportion of
clinically apparent cases that are severe or fatal.</rdfs:comment>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in an
infectious agent and is the degree to which realizations of the infectious
disease caused by the infectious agent become severe or fatal.
</obo:IAO_0000115>
@@ -1041,7 +1041,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000467">
<rdfs:label xml:lang="en">susceptibility</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<rdfs:comment>Low susceptibility is often referred to as
resistance. In this sense, resistance is a quality.</rdfs:comment>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in an entity
and is the degree to which it can be harmed by another
entity.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -1187,7 +1187,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000479">
<rdfs:label xml:lang="en">infectious disease incidence</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<rdfs:comment>A particular instance of infectious disease
incidence will depend on a type of infectious disease, a population, and a
period of time. Incidence is used as a measure of risk. Actual measures
of incidence are based only on reported cases and usually specify a time
interval and geographic location. Other constraints may include population
demographics. These constraints will vary with the context of the
incidence measure.</rdfs:comment>
@@ -1201,7 +1201,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000480">
<rdfs:label xml:lang="en">infection incidence</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<rdfs:comment>A particular instance of infection incidence will
depend on a type of infectious agent, a population, and a period of time.
Incidence is used as a measure of risk. Actual measures of incidence are
based only on reported cases and usually specify a time interval and
geographic location. Other constraints may include population
demographics. These constraints will vary with the context of the
incidence measure.</rdfs:comment>
@@ -1215,7 +1215,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000481">
<rdfs:label xml:lang="en">infectious disease incidence
proportion</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<rdfs:comment>An instance of infectious disease incidence
proportion is measured by dividing a measure of an instance of infectious
disease incidence by the number of members of the population in which the
infectious disease course had not begun at the beginning of the specified
period of time over which the incidence was measured.</rdfs:comment>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -1230,7 +1230,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000482">
<rdfs:label xml:lang="en">infection incidence
proportion</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<rdfs:comment>An instance of infection incidence proportion is
measured by dividing a measure of an instance of infection incidence by the
number of members of the population not infected at the beginning of the
specified period of time over which the incidence was
measured.</rdfs:comment>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in an
organism population and is the proportion of members of the population not
infected at the beginning of a specified period of time who become infected
during the specified period of time. </obo:IAO_0000115>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -1245,7 +1245,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000483">
<rdfs:label xml:lang="en">infectious disease incidence
rate</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in an
organism population and is the infectious disease incidence proportion per
unit time.</obo:IAO_0000115>
<rdfs:comment>An instance of infectious disease incidence rate is
measured by dividing a measure of an instance of the infectious disease
incidence proportion by the length of the period of time over which the
incidence was measured.</rdfs:comment>
@@ -1259,7 +1259,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000484">
<rdfs:label xml:lang="en">infection incidence rate</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>An instance of infection incidence rate is measured
by dividing a measure of an instance of infection incidence proportion by
the length of the period of time over which the incidence was
measured.</rdfs:comment>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in an
organism population and is the infection incidence proportion per unit
time.</obo:IAO_0000115>
@@ -1273,7 +1273,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000485">
<rdfs:label xml:lang="en">infectious disease
prevalence</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<rdfs:comment>Prevalence is sometimes defined as a proportion with
total population size in the denominator. A particular instance of
infectious disease prevalence will depend on a type of infectious disease,
a population, and a period of time. Actual measures of prevalence are
based only on reported cases and usually specify a time interval and
geographic location. Other constraints may include population
demographics.</rdfs:comment>
@@ -1287,7 +1287,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000486">
<rdfs:label xml:lang="en">infection prevalence</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in an
organism population and is the number of organisms in the population
infected with an infectious agent at a specified time.</obo:IAO_0000115>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -1301,7 +1301,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000487">
<rdfs:label xml:lang="en">infectious disease lifetime
prevalence</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in an
organism population and is the number of organisms in the population who
have, at any point during their lives, been bearers of an infectious
disease and experienced realization of the disease.</obo:IAO_0000115>
@@ -1315,7 +1315,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000488">
<rdfs:label xml:lang="en">infectious agent
seroprevalence</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<rdfs:comment>Prevalence is sometimes defined as a proportion with
total population size in the denominator. A particular instance of
infectious agent seroprevalence will depend on a type of infectious agent
and a population. Actual measures of seroprevalence are based only on
tested individuals and usually specify a geographic location. Other
constraints may include population demographics.</rdfs:comment>
@@ -1329,7 +1329,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000489">
<rdfs:label xml:lang="en">infectious disease mortality
rate</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -1343,7 +1343,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000490">
<rdfs:label xml:lang="en">infectious disease
endemicity</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in an
organism population in virtue of the fact that infections of the type that
causes an infectious disease are maintained in the population via
intra-population transmission or by transmission from a local
reservoir.</obo:IAO_0000115>
@@ -1399,7 +1399,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000494">
<rdfs:label xml:lang="en">infectious disease
sporadicity</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in an
organism population by virtue of the fact that realizations of an
infectious disease occur in the population with a fluctuating
prevalence.</obo:IAO_0000115>
@@ -1439,7 +1439,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000497">
<rdfs:label xml:lang="en">immunization against infectious
agent</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -1506,7 +1506,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000502">
<rdfs:label xml:lang="en">infectious disease epidemic</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A process of infectious disease
realizations and for which there is a statistically significant increase in
the infectious disease incidence of a population.</obo:IAO_0000115>
@@ -1521,7 +1521,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000503">
<rdfs:label xml:lang="en">infectious disease pandemic</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A process in which multiple
infectious disease epidemics of the same type of infectious disease unfold
over overlapping periods of time and affect organism populations located in
different geographic regions, including different countries and
continents.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -1586,7 +1586,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000509">
<rdfs:label xml:lang="en">organism population</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<rdfs:comment>The organism population may be delineated by
spatio-temporal proximity or by demographic criteria such as
age.</rdfs:comment>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -1667,7 +1667,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000519">
<rdfs:label xml:lang="en">incubation period</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#TemporalInterval"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000038"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -1680,7 +1680,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000520">
<rdfs:label xml:lang="en">communicability period</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#TemporalInterval"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000038"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -1758,7 +1758,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000528">
<rdfs:label xml:lang="en">pathogen</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A material entity with a pathogenic
disposition.</obo:IAO_0000115>
@@ -1944,7 +1944,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000543">
<rdfs:label xml:lang="en">vehicle of infectious agent</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A material entity bearing an
infectious agent vehicle role.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -1957,7 +1957,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000544">
<rdfs:label xml:lang="en">fomite</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A material entity bearing a fomite
role.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -1970,7 +1970,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000545">
<rdfs:label xml:lang="en">infectious agent reservoir</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A material entity bearing an
infectious agent reservoir role.</obo:IAO_0000115>
@@ -2088,7 +2088,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000555">
<rdfs:label xml:lang="en">disinfectant</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -2101,7 +2101,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000556">
<rdfs:label xml:lang="en">antiseptic</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115 xml:lang="en">A material entity bearing an
antiseptic role.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -2129,7 +2129,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000558">
<rdfs:label xml:lang="en">antimicrobial</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A material entity with an
antimicrobial disposition.</obo:IAO_0000115>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -2142,7 +2142,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000559">
<rdfs:label xml:lang="en">antiviral</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -2155,7 +2155,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000560">
<rdfs:label xml:lang="en">antifungal</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A material entity bearing an
antifungal disposition.</obo:IAO_0000115>
@@ -2168,7 +2168,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000561">
<rdfs:label xml:lang="en">antiparasitic</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -2181,7 +2181,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000562">
<rdfs:label xml:lang="en">antibacterial</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000118>antibiotic</obo:IAO_0000118>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -2195,7 +2195,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000563">
<rdfs:label xml:lang="en">microbicide</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115 xml:lang="en">A material entity with an
antimicrobial disposition that is realized in a process of killing
microorganisms.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -2209,7 +2209,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000564">
<rdfs:label xml:lang="en">viricide</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115 xml:lang="en">A material entity with an antiviral
disposition that is realized in a process of killing
viruses.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -2222,7 +2222,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000565">
<rdfs:label xml:lang="en">microbistatic</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -2300,7 +2300,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000571">
<rdfs:label xml:lang="en">resistant entity</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A material entity that has a
resistance disposition.</obo:IAO_0000115>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -2465,7 +2465,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000586">
<rdfs:label xml:lang="en">infection</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<rdfs:comment>The organism corresponding to the extended organism
is host to the infectious agents. By this definition, parts of the host
can be considered part of the infection.</rdfs:comment>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -2547,7 +2547,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000593">
<rdfs:label xml:lang="en">transmission period</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#TemporalInterval"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000038"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -2663,7 +2663,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000603">
<rdfs:label xml:lang="en">process of establishing an
infection</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115 xml:lang="en">A process by which an infectious
agent, established in a host, becomes part of an infection in the
host.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -2703,7 +2703,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000607">
<rdfs:label xml:lang="en">production</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#Process"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115 xml:lang="en">A process in which an entity comes
into being as a result of the process.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -2742,7 +2742,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000610">
<rdfs:label xml:lang="en">immunosuppression</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A process that attenuates an immune
response.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -2821,7 +2821,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000618">
<rdfs:label xml:lang="en">immunocompetence</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A disposition that is the ability
to mount a normal immune response.</obo:IAO_0000115>
@@ -2835,7 +2835,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000619">
<rdfs:label xml:lang="en">immunosuppressive
disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -2864,7 +2864,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000622">
<rdfs:label xml:lang="en">disposition to form a non-parasitic
colony</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A disposition to colonize an
organism and participate in mutualism or commensalism with that
organism.</obo:IAO_0000115>
@@ -2906,7 +2906,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000626">
<rdfs:label xml:lang="en">appearance of disorder</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -2946,7 +2946,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000629">
<rdfs:label xml:lang="en">host role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A role borne by an organism in
virtue of the fact that it's extended organism contains a material
entity other than the organism.</obo:IAO_0000115>
@@ -3012,7 +3012,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000635">
<rdfs:label xml:lang="en">source of infection role</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role borne by a material entity
in virtue of the fact that it contains a site from which an infectious
agent is transmitted.</obo:IAO_0000115>
<rdfs:comment>The role is realized in a process that has as part a
transmission process and a process by which the infectious agent or one of
its offspring becomes part of a disorder in the host.</rdfs:comment>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -3026,7 +3026,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000636">
<rdfs:label xml:lang="en">sepsis</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115 xml:lang="en">A process that is a systemic
inflammatory response to infection.</obo:IAO_0000115>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
@@ -3263,7 +3263,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000655">
<rdfs:label>transmissibility disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>The disposition is realized in a transmission
process.</rdfs:comment>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -3288,7 +3288,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000657">
<rdfs:label>process that results in death</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115>A process that results in death.</obo:IAO_0000115>
<obo:IAO_0000117>Alex Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
@@ -3300,7 +3300,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000658">
<rdfs:label>host exposure to infectious agent</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000115>A process in which a potential host of an
infectious agent is exposed to an infectious agent.</obo:IAO_0000115>
</owl:Class>
@@ -3347,7 +3347,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000665">
<rdfs:label>source of infection</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115>A material entity bearing a source of infection
role.</obo:IAO_0000115>
<obo:IAO_0000117>Alex Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
@@ -3370,7 +3370,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000667">
<rdfs:label xml:lang="en">parasitic disposition</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000115>A disposition to participate in a process of
symbiosis in which the bearer derives a growth, survival, or fitness
advantage from symbiosis while the other symbiont's growth, survival,
or fitness is reduced.</obo:IAO_0000115>
</owl:Class>

@@ -3380,7 +3380,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0001002">
<rdfs:label>transition to clinical abnormality</rdfs:label>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115>A process by which a part of an organism or
something contained in an organism becomes clinically
abnormal.</obo:IAO_0000115>
</owl:Class>

@@ -3496,51 +3496,38 @@

- 
-
- <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
-
-
-
- 
-
- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
-
-
-
- 
+ 

- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000016"/>

- 
+ 

- <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>

- 
+ 

- <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000019"/>

- 
+ 

- <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/span#Process"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000023"/>

-
- 
+ 

- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>

- 
+ 

- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/span#TemporalInterval"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000038"/>

=======================================
--- /trunk/src/ontology/ido-core/ido-external-by-hand.owl Fri Nov 15
06:37:40 2013 UTC
+++ /trunk/src/ontology/ido-core/ido-external-by-hand.owl Fri Nov 15
07:54:42 2013 UTC
@@ -1,33 +1,5 @@
<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.org/obo/owl/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:oboContent="http://purl.org/obo/owl/"
xmlns:oban="http://purl.org/obo/oban/"
xmlns:owl11="http://www.w3.org/2006/12/owl11#onClass"
xmlns:owl2="http://www.w3.org/2006/12/owl2#onClass"
xmlns:obo="http://purl.org/obo/owl/obo#"
xml:base="http://purl.org/obo/owl/ro_proposed">
- 
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasAlternativeId"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDate"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasVersion"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDefaultNamespace"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDefinition"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasSynonym"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasSynonymType"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasSubset"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#hasURI"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#isCyclic"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#savedBy"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#replacedBy"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#consider"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#expandAssertionTo"/>
- <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#expandExpressionTo"/>
- <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#DbXref"/>
- <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#Definition"/>
- <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#Subset"/>
- <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#Synonym"/>
- <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
<owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<owl:ObjectProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/ido-external-by-hand.owl">
=======================================
--- /trunk/src/ontology/ido-core/ido-external.owl Fri Nov 15 06:37:40 2013
UTC
+++ /trunk/src/ontology/ido-core/ido-external.owl Fri Nov 15 07:54:42 2013
UTC
@@ -43,7 +43,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100026">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</owl:Class>

@@ -52,7 +52,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000020">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1#Entity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
</owl:Class>

@@ -61,7 +61,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000031">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
</owl:Class>

@@ -70,7 +70,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000045">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
</owl:Class>

@@ -79,7 +79,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000063">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
</owl:Class>

@@ -88,7 +88,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000087">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
</owl:Class>

@@ -97,7 +97,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0000000">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/caro.owl"/>
</owl:Class>

@@ -106,7 +106,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/chebi.owl"/>
</owl:Class>

@@ -133,7 +133,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_00002036">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Site"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
<IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/envo.owl"/>
</owl:Class>

@@ -187,7 +187,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>

@@ -349,7 +349,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0065007">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>

@@ -412,7 +412,7 @@


<owl:Class rdf:about="http://purl.obolibrary.org/obo/TRANS_0000000">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/trans.owl"/>
</owl:Class>

@@ -427,41 +427,34 @@

- 
+ 

- <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
-
-
-
- 
-
- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000016"/>

- 
+ 

- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>

-
- 
+ 

- <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000019"/>

- 
+ 

- <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Site"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000029"/>

- 
+ 

- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032991">
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
</owl:Class>

=======================================
--- /trunk/src/ontology/ido-core/ido-main.owl Fri Nov 15 06:37:40 2013 UTC
+++ /trunk/src/ontology/ido-core/ido-main.owl Fri Nov 15 07:54:42 2013 UTC
@@ -21,7 +21,6 @@
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/ido-base.owl"/>
<owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ido/ido-external-by-hand.owl"/>
<owl:imports rdf:resource="http://www.obofoundry.org/ro/ro.owl"/>
- <owl:imports
rdf:resource="http://www.obofoundry.org/ro/ro_bfo_bridge.owl"/>
</owl:Ontology>

@@ -62,8 +61,8 @@

<owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IDO_0000661">
<rdfs:label xml:lang="en">capable_of</rdfs:label>
- <rdfs:domain
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#IndependentContinuant"/>
- <rdfs:range
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
</owl:ObjectProperty>

@@ -71,7 +70,7 @@


<owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IDO_0000664">
- <rdfs:range
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:ObjectProperty>

@@ -80,8 +79,8 @@

<owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#bearer_of">
<owl:inverseOf
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <rdfs:range
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#DependentContinuant"/>
- <rdfs:domain
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#IndependentContinuant"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
</owl:ObjectProperty>

@@ -90,7 +89,7 @@

<owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_disposition">
<rdfs:subPropertyOf
rdf:resource="http://purl.org/obo/owl/OBO_REL#bearer_of"/>
- <rdfs:range
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
</owl:ObjectProperty>

@@ -99,7 +98,7 @@

<owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_function">
<rdfs:subPropertyOf
rdf:resource="http://purl.org/obo/owl/OBO_REL#bearer_of"/>
- <rdfs:range
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Function"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
</owl:ObjectProperty>

@@ -113,7 +112,7 @@


<owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_role">
- <rdfs:range
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
</owl:ObjectProperty>

@@ -140,8 +139,8 @@

<owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realized_by">
<owl:inverseOf
rdf:resource="http://purl.org/obo/owl/OBO_REL#realizes"/>
- <rdfs:domain
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#RealizableEntity"/>
- <rdfs:range
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
</owl:ObjectProperty>

@@ -163,12 +162,12 @@


<owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#unfolds_in">
- <rdfs:domain
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<rdfs:range>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#Site"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000029"/>
</owl:unionOf>
</owl:Class>
</rdfs:range>
@@ -414,7 +413,7 @@
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_part"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000625"/>
@@ -464,7 +463,7 @@
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_part"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000625"/>
@@ -672,7 +671,7 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#location_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000596"/>
@@ -853,7 +852,7 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Class>
<owl:complementOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
</owl:Class>
@@ -891,7 +890,7 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#location_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000596"/>
@@ -995,7 +994,7 @@
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
@@ -1033,7 +1032,7 @@
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
@@ -1066,7 +1065,7 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000439"/>
@@ -1080,7 +1079,7 @@
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Class>
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
@@ -1124,7 +1123,7 @@
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000439"/>
@@ -1138,7 +1137,7 @@
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Class>
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
@@ -1361,14 +1360,14 @@
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Class>
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
@@ -1414,14 +1413,14 @@
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Class>
<owl:unionOf
rdf:parseType="Collection">
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/GO_0048525"/>
@@ -1463,14 +1462,14 @@
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Class>
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
@@ -1518,14 +1517,14 @@
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Class>
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
@@ -1568,14 +1567,14 @@
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Class>
<owl:unionOf
rdf:parseType="Collection">
<owl:Restriction>
@@ -1619,7 +1618,7 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000450"/>
@@ -1703,14 +1702,14 @@
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#results_in_formation_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000045"/>
@@ -1777,7 +1776,7 @@
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_part"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000625"/>
@@ -1819,7 +1818,7 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000458"/>
@@ -2004,7 +2003,7 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
@@ -2328,7 +2327,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_output"/>
<owl:someValuesFrom>
@@ -2605,7 +2604,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000450"/>
@@ -2862,7 +2861,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_role"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000421"/>
@@ -2881,7 +2880,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_role"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000423"/>
@@ -2902,7 +2901,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_role"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000424"/>
@@ -3055,7 +3054,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_role"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000432"/>
@@ -3077,7 +3076,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_role"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000433"/>
@@ -3117,7 +3116,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000439"/>
@@ -3138,7 +3137,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000440"/>
@@ -3159,7 +3158,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000441"/>
@@ -3180,7 +3179,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000443"/>
@@ -3201,7 +3200,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000442"/>
@@ -3222,7 +3221,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom>
@@ -3245,7 +3244,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Class>

@@ -3256,7 +3255,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom>
@@ -3284,7 +3283,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom>
@@ -3315,7 +3314,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Class>

@@ -3527,7 +3526,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000444"/>
@@ -3689,14 +3688,14 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000455"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#results_in_formation_of"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000045"/>
@@ -3871,7 +3870,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/GO_0006955"/>
@@ -3959,7 +3958,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#realized_by"/>
@@ -4038,7 +4037,7 @@
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf
rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_part"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000625"/>
@@ -4133,7 +4132,7 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/OGMS_0000087"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#has_part"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
@@ -4184,7 +4183,7 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
- <owl:someValuesFrom
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
@@ -4439,7 +4438,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty
rdf:resource="http://purl.org/obo/owl/OBO_REL#has_role"/>
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000635"/>
@@ -4647,63 +4646,56 @@

- 
-
- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#DependentContinuant"/>

- 
+ 

- <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000016"/>

- 
+ 

- <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Function"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000034"/>

- 
+ 

- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#IndependentContinuant"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000004"/>

- 
+ 

- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>

-
- 

- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate"/>
-

- 
+ 

- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#RealizableEntity"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000017"/>

- 
+ 

- <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000023"/>

- 
+ 

- <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Site"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000029"/>

- 
+ 

- <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>

Reply all

Reply to author

Forward

0 new messages