[infectious-disease-ontology] r353 committed - use dated ontology-metadata import in this one, while protege fixes bu...

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Revision: 353
Author: alanruttenberg
Date: Sat Sep 3 00:53:38 2011
Log: use dated ontology-metadata import in this one, while protege
fixes bug

http://code.google.com/p/infectious-disease-ontology/source/detail?r=353

Added:
/releases/2010-12-02/ido-main-workaround.owl

=======================================
--- /dev/null
+++ /releases/2010-12-02/ido-main-workaround.owl Sat Sep 3 00:53:38 2011
@@ -0,0 +1,7228 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<rdf:RDF
+ xmlns:j.0="http://www.geneontology.org/formats/oboInOwl#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:j.1="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/ido/ido-main-workaround.owl">
+ <owl:versionIRI
rdf:resource="http://purl.obolibrary.org/obo/ido/2010-12-02/ido-main-workaround.owl"/>
+ <owl:imports rdf:resource="http://www.obofoundry.org/ro/ro.owl"/>
+ <dc:creator>Albert Goldfain</dc:creator>
+ <dc:creator>Barry Smith</dc:creator>
+ <dc:creator>Bjoern Peters</dc:creator>
+ <owl:imports rdf:resource="http://www.ifomis.org/bfo/1.1"/>
+ <j.1:defaultLanguage>en</j.1:defaultLanguage>
+ <owl:imports
rdf:resource="http://www.obofoundry.org/ro/ro_bfo_bridge.owl"/>
+ <dc:creator>Alan Ruttenberg</dc:creator>
+ <rdfs:comment xml:lang="en">The core Infectious Disease Ontology is an
ontology of entities generally relevant to both the biomedical and clinical
aspects of infectious diseases, including terms such
as 'pathogen', 'host', 'vector', and 'vaccine'. The structure of IDO
adheres to the Basic Formal Ontology. Terms in IDO that are within the
scope of other OBO Foundry ontologies, such as the Gene Ontology, are
derived from those ontologies. Other terms are defined as cross-products
of terms from Foundry ontologies to the extent possible. For more
information, see http://www.infectiousdiseaseontology.org/Home.html.
</rdfs:comment>
+ <dc:creator>Lindsay Cowell</dc:creator>
+ <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#date"
+ >2010-12-02</dc:date>
+
<rdfs:seeAlso>http://www.infectiousdiseaseontology.org/Home.html</rdfs:seeAlso>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/2009-11-06/ontology-metadata.owl"/>
+ <dc:creator>Alexander Diehl</dc:creator>
+ <owl:imports
rdf:resource="http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl"/>
+ </owl:Ontology>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000640">
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000651"/>
+ </owl:disjointWith>
+ <rdfs:label xml:lang="en">acquired immunodeficiency</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000617"/>
+ </rdfs:subClassOf>
+ <rdfs:comment>Causes of acquired immunodeficiences include infection
and drug treatments (e.g. chemotherapy).</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An immunodeficiency that is not caused
by a genetic predisposition.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006955">
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <obo:IAO_0000111 xml:lang="en">immune response</obo:IAO_0000111>
+ <rdfs:label xml:lang="en">immune response</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Any immune system process that
functions in the calibrated response of an organism to a potential internal
or invasive threat.</obo:IAO_0000115>
+ </owl:Class>
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate">
+ <rdfs:subClassOf>
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ </rdfs:subClassOf>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000550">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000427"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:label xml:lang="en">exotoxin</rdfs:label>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A molecular entity bearing an exotoxin
disposition.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000549"/>
+ </rdfs:subClassOf>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000545">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_role"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000424"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000617"/>
+ </owl:disjointWith>
+ <rdfs:label xml:lang="en">infectious agent reservoir</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A material entity bearing an infectious
agent reservoir role.</obo:IAO_0000115>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ </owl:Class>
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass">
+ <rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000425">
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000438"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000443"/>
+ </owl:disjointWith>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000031"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000458"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000444"/>
+ </owl:disjointWith>
+ <obo:IAO_0000115 xml:lang="en">A disposition borne by a biological
macromolecule produced by a pathogen that is a disposition to undergo
processes that increase the pathogen's virulence.</obo:IAO_0000115>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000455"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000441"/>
+ </owl:disjointWith>
+ <rdfs:label xml:lang="en">virulence factor disposition</rdfs:label>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000622"/>
+ </owl:disjointWith>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000442"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000655"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000451"/>
+ </owl:disjointWith>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000618"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000440"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000619"/>
+ </owl:disjointWith>
+ <rdfs:comment>The virulence factor disposition is typically realized
in processes that improve survival of the pathogen in a host, increase the
likelihood of transmission to a host, or cause pathological processes in a
host.</rdfs:comment>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000439"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000450"/>
+ </owl:disjointWith>
+ <rdfs:subClassOf>
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000426"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000437"/>
+ </owl:disjointWith>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000621">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000448"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IDO_0000664"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0019814"/>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0019815"/>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0042101"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IDO_0000664"/>
+ </owl:onProperty>
+ <owl:allValuesFrom>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0019814"/>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0019815"/>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0042101"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realized_by"/>
+ </owl:onProperty>
+ <owl:allValuesFrom>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0002250"/>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:comment>The disposition is realized in an immune response in
which such antigen receptors participate.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An immunity to infectious agent that
inheres in an organism in virtue of antigen receptors encoded by
somatically diversified genes in the organism's genome and expressed by
cells that have undergone selection during a primary immune response in
that organism.</obo:IAO_0000115>
+ <obo:IAO_0000118 xml:lang="en">immune memory</obo:IAO_0000118>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000118 xml:lang="en">adaptive immunity to infectious
agent</obo:IAO_0000118>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000448"/>
+ </rdfs:subClassOf>
+ <rdfs:label xml:lang="en">acquired immunity to infectious
agent</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000631">
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000638"/>
+ </owl:disjointWith>
+ <rdfs:comment>DL needs 'health care facility'</rdfs:comment>
+ <rdfs:label xml:lang="en">community-acquired infection</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000586"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infection resulting from a
transmission process that did not unfold in a health care
facility.</obo:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000564">
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000559"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 xml:lang="en">A material entity with an antiviral
disposition that is realized in a process of killing
viruses.</obo:IAO_0000115>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000440"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realized_by"/>
+ </owl:onProperty>
+ <owl:allValuesFrom>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0016265"/>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:label xml:lang="en">viricide</rdfs:label>
+ <rdfs:comment>DL needs 'process of killing viruses'</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000535">
+ <rdfs:label xml:lang="en">dead-end host</rdfs:label>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_role"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000412"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000118 xml:lang="en">incidental host</obo:IAO_0000118>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000531"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 xml:lang="en">An organism bearing a dead-end host
role.</obo:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000650">
+ <rdfs:label xml:lang="en">colonization of human</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000604"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A colonization of host process in which
the host is of Species Homo sapiens.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000439">
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000619"/>
+ </owl:disjointWith>
+ <rdfs:subClassOf>
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>Some instances might be functions, depending on whether
the bearer is something that exists and is used for the purpose (alcohol)
or something that was designed for the purpose (pine sol). Entities that
kill microorganisms are referred to as microbicidal; entities that inhibit
the growth of microorganisms are referred to as
microbistatic.</rdfs:comment>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000450"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000618"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000031"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000622"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000444"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000455"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000655"/>
+ </owl:disjointWith>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000451"/>
+ </owl:disjointWith>
+ <rdfs:comment>The disposition is realized in the killing or growth
inhibition of microorganisms.</rdfs:comment>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:subClassOf>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realized_by"/>
+ </owl:onProperty>
+ <owl:allValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IDO_0000660"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0016265"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0000003"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0032502"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 xml:lang="en">A disposition to kill or inhibit the
development or reproduction of microorganisms.</obo:IAO_0000115>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000458"/>
+ </owl:disjointWith>
+ <rdfs:label xml:lang="en">antimicrobial disposition</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000505">
+ <obo:IAO_0000115 xml:lang="en">An infection that has as part virus
particles located in the blood.</obo:IAO_0000115>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000506"/>
+ </owl:disjointWith>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>DL needs FMA term.</rdfs:comment>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000472"/>
+ </rdfs:subClassOf>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000586"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#has_part"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000596"/>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239"/>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:label xml:lang="en">viremia</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000515">
+ <rdfs:label xml:lang="en">normal resident microbiota
population</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000509"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An organism population whose members
are particpating in non-parasitic symbiosis with a particular
host.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000118 xml:lang="en">normal resident microflora
population</obo:IAO_0000118>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000611">
+ <rdfs:label xml:lang="en">physiologic immunosuppression</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000610"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An immunosuppression which unfolds as
part of the natural self-regulation of an immune response.</obo:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000578">
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000448"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:subClassOf>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realized_by"/>
+ </owl:onProperty>
+ <owl:allValuesFrom>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0006959"/>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 xml:lang="en">An immunity to infectious agent that
inheres in an organism in virtue of components of its circulating body
fluid.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:label xml:lang="en">humoral immunity to infectious
agent</rdfs:label>
+ <rdfs:comment>"Circulating body fluid" refers to blood, lymph, and
hemolymph.</rdfs:comment>
+ <rdfs:comment>The disposition is realized in a humoral immune
response.</rdfs:comment>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000464">
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000509"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:label xml:lang="en">infectivity</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>This quality is measured by the proportion of exposed
who become infected.</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">A quality that inheres in an infectious
agent and is the liklihood that the infectious disposition will be realized
upon exposure of a susceptible organism.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000525">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_role"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000402"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:label xml:lang="en">commensal</rdfs:label>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An organism bearing a commensal
role.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000522"/>
+ </rdfs:subClassOf>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000601">
+ <rdfs:label xml:lang="en">host coming into contact with vector of
infectious agent</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000597"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A host exposure to environment with
infectious agent where the environment contains an infectious agent
vector.</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">Alan Ruttenberg 2010/05/20- Tentative
definition. Needs review by Bjoern</obo:IAO_0000116>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044406">
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0008150"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/GO"/>
+ <rdfs:label xml:lang="en">adhesion to host</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">The attachment of an organism to its
host via adhesion molecules, general stickiness etc., either directly or
indirectly. The host is defined as the larger of the organisms involved in
a symbiotic interaction.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">adhesion to host</obo:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239">
+ <rdfs:label>Viruses</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/NCBITaxon"/>
+ <rdfs:label xml:lang="en">Viruses</rdfs:label>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000424">
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000434"/>
+ </owl:disjointWith>
+ <obo:IAO_0000115 xml:lang="en">A role borne by a material entity in
virtue of the fact that it is a habitat in which infectious agents can
persist and multiply and from which they can be transmitted in virtue of
prevailing practices of potential hosts.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:label xml:lang="en">reservoir of infectious agent
role</rdfs:label>
+ <rdfs:comment>The role is realized in a process that has as part life
and multiplication processes of an infectious agent and a transmission
process. </rdfs:comment>
+ <rdfs:subClassOf>
+ <rdf:Description rdf:about="http://www.ifomis.org/bfo/1.1/snap#Role">
+ <rdfs:subClassOf>
+ <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#RealizableEntity">
+ <rdfs:subClassOf>
+ <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#SpecificallyDependentContinuant">
+ <rdfs:subClassOf>
+ <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#DependentContinuant">
+ <rdfs:subClassOf>
+ <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1/snap#Continuant">
+ <rdfs:subClassOf>
+ <rdf:Description
rdf:about="http://www.ifomis.org/bfo/1.1#Entity">
+ <rdfs:subClassOf
rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
+ </rdf:Description>
+ </rdfs:subClassOf>
+ </rdf:Description>
+ </rdfs:subClassOf>
+ </rdf:Description>
+ </rdfs:subClassOf>
+ </rdf:Description>
+ </rdfs:subClassOf>
+ </rdf:Description>
+ </rdfs:subClassOf>
+ </rdf:Description>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#location_of"/>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000596"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000431"/>
+ </owl:disjointWith>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000435"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000432"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000433"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000629"/>
+ </owl:disjointWith>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000635"/>
+ </owl:disjointWith>
+ <rdfs:comment>If the material entity bearing the reservoir role is an
organism, then this organism also bears the host role. The organism may
also bear the vector role.</rdfs:comment>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000430"/>
+ </owl:disjointWith>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000630">
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>DL needs 'hospital' (OGMS?)</rdfs:comment>
+ <rdfs:label xml:lang="en">hospital-acquired infection</rdfs:label>
+ <obo:IAO_0000118 xml:lang="en">nosocomial infection</obo:IAO_0000118>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000586"/>
+ </rdfs:subClassOf>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000631"/>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An infection resulting from a
transmission process that unfolds in a hospital.</obo:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000536">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_role"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000413"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:label xml:lang="en">parasite host</rdfs:label>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">An organism bearing a parasite host
role.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000531"/>
+ </rdfs:subClassOf>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000563">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000439"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realized_by"/>
+ </owl:onProperty>
+ <owl:allValuesFrom>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IDO_0000660"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0016265"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <obo:IAO_0000118 xml:lang="en">microbicidal [entity]</obo:IAO_0000118>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000558"/>
+ </rdfs:subClassOf>
+ <rdfs:comment>DL needs 'process of killing
microorganisms'</rdfs:comment>
+ <rdfs:label xml:lang="en">microbicide</rdfs:label>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A material entity with an antimicrobial
disposition that is realized in a process of killing
microorganisms.</obo:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000651">
+ <rdfs:label>primary immunodeficiency</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000617"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115>An immunodeficiency that exists in an organism
because of a genetic predisposition.</obo:IAO_0000115>
+ <obo:IAO_0000118>congenital immunodeficiency</obo:IAO_0000118>
+ <obo:IAO_0000117>Alex Diehl</obo:IAO_0000117>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000438">
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000619"/>
+ </owl:disjointWith>
+ <rdfs:comment>A molecule with the invasion disposition is referred to
as an invasion factor or invasin.</rdfs:comment>
+ <owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000439"/>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000458"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000450"/>
+ </owl:disjointWith>
+ <obo:IAO_0000115 xml:lang="en">A disposition borne by a biological
macromolecule that is the disposition to facilitate breach of host
epithelial barriers or entry into and survival in host
cells.</obo:IAO_0000115>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000618"/>
+ </owl:disjointWith>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000451"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000442"/>
+ </owl:disjointWith>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000443"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000031"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000440"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000622"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000444"/>
+ </owl:disjointWith>
+ <rdfs:subClassOf>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realized_by"/>
+ </owl:onProperty>
+ <owl:allValuesFrom>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#positively_regulates"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/GO#GO_0044411"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:allValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </rdfs:subClassOf>
+ <rdfs:label xml:lang="en">invasion disposition</rdfs:label>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000455"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000655"/>
+ </owl:disjointWith>
+ <owl:disjointWith>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000441"/>
+ </owl:disjointWith>
+ <rdfs:subClassOf>
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000610">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
+ </owl:onProperty>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/GO#GO_0006955"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:label xml:lang="en">immunosuppression</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A process that attenuates an immune
response.</obo:IAO_0000115>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000506">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000586"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#has_part"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000596"/>
+ <owl:Class
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2"/>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000472"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>DL needs FMA term.</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">An infection that has as part bacteria
located in the blood.</obo:IAO_0000115>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:label xml:lang="en">bacteremia</rdfs:label>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000479">
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000509"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:label xml:lang="en">infectious disease incidence</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <rdfs:comment>A particular instance of infectious disease incidence
will depend on a type of infectious disease, a population, and a period of
time. Incidence is used as a measure of risk. Actual measures of
incidence are based only on reported cases and usually specify a time
interval and geographic location. Other constraints may include population
demographics. These constraints will vary with the context of the
incidence measure.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A quality that inheres in an organism
population and is the number of realizations of an infectious disease for
which the infectious disease course begins during a specified period of
time.</obo:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000463">
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000596"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:label xml:lang="en">infectious agent
transmissibility</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Quality"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:comment>The transmissibility quality varies with both the type
of organism being transmitted and the type of organism to which
transmission is happening.</rdfs:comment>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A quality that inheres in an infectious
agent and is the likelihood that the infectious agent will undergo a
horizontal transmission process.</obo:IAO_0000115>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000526">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_role"/>
+ </owl:onProperty>
+ <owl:someValuesFrom>
+ <owl:Class
rdf:about="http://purl.obolibrary.org/obo/IDO_0000403"/>
+ </owl:someValuesFrom>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:label xml:lang="en">parasite</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A organism bearing a parasite
role.</obo:IAO_0000115>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000522"/>
+ </rdfs:subClassOf>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000600">
+ <rdfs:label xml:lang="en">release of infectious human pathogen in
laboratory</rdfs:label>
+ <rdfs:subClassOf>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000597"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
+ <obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
+ <obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A host exposure to environment with
infectious agent where the exposure is accidental; the environment is a
laboratory, and the infectious agent is infectious in
humans.</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">Alan Ruttenberg 2010/05/20- Tentative
definition. Needs review by Bjoern</obo:IAO_0000116>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.org/obo/owl/CARO#CARO_0000000">
+ <rdfs:subClassOf>
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+ </rdfs:subClassOf>
+ <obo:IAO_0000412 rdf:resource="http://purl.org/obo/owl/CARO"/>
+ <rdfs:label xml:lang="en">anatomical entity</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Biological entity that is either an
individual member of a biological species or constitutes the structural
organization of an individual member of a biological
species.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">anatomical entity</obo:IAO_0000111>
+ </owl:Class>
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000547">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <owl:Class
rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+ <owl:Restriction>
+ <owl:onProperty>
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_disposition"/>
***The diff for this file has been truncated for email.***

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