[infectious-disease-ontology] r344 committed - revised definition of infectious disposition and infection to reflects...

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Revision: 344
Author: lindsay...@utsouthwestern.edu
Date: Mon Dec 20 16:51:31 2010
Log: revised definition of infectious disposition and infection to reflects
comments from workshop.

http://code.google.com/p/infectious-disease-ontology/source/detail?r=344

Modified:
/trunk/src/ontology/ido-core/ido-base.owl
/trunk/src/ontology/ido-core/ido-main.owl

=======================================
--- /trunk/src/ontology/ido-core/ido-base.owl Sun Dec 5 14:07:09 2010
+++ /trunk/src/ontology/ido-core/ido-base.owl Mon Dec 20 16:51:31 2010
@@ -51,12 +51,12 @@
<owl:AnnotationProperty
rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
<owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
<owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
- <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
<owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
<owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
- <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
<owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/OBI_0000283"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
<owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
<owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
<owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
@@ -826,11 +826,11 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000452">
<rdfs:label xml:lang="en">infectious disposition</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000450"/>
- <rdfs:comment>The disposition is realized in a process that has as
part a transmission process, an establishment in host process, and a
process in which an organism becomes part of a disorder. The infectious
disposition has a complementary disposition that inheres in an organism and
is the capability to be host to an organism with an infectious disposition
and to undergo processes intiated by that infectious organism that result
in a disorder.</rdfs:comment>
- <obo:IAO_0000115 xml:lang="en">A pathogenic disposition that
inheres in an organism and is the disposition for that organism (1) to be
transmitted to a host, (2) to establish itself in the host, and (3) to
become part of a disorder in the host.</obo:IAO_0000115>
+ <rdfs:comment>The disposition is realized in a process that has as
part a transmission process, an establishment in host process, a process
that results in a disorder, and a process in which the bearer of the
disposition becomes part of that disorder. The infectious disposition has
a complementary disposition that inheres in an organism and is the
capability to be host to an organism with an infectious disposition and to
undergo processes intiated by that infectious organism that result in a
disorder.</rdfs:comment>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A pathogenic disposition that
inheres in an organism and is the disposition for that organism (1) to be
transmitted to a host, (2) to establish itself in the host, (3) to initiate
processes that result in a disorder in the host, and (4) to become part of
that disorder.</obo:IAO_0000115>
</owl:Class>


@@ -2432,7 +2432,7 @@
<rdfs:comment>The organism corresponding to the extended organism
is host to the infectious agents. By this definition, parts of the host
can be considered part of the infection.</rdfs:comment>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">A part of an extended organism that
itself has as part a population of one or more infectious agents and that
is (1) clinically abnormal in virtue of the presence of this infectious
agent population, or (2) has a disposition to bring clinical abnormality to
immunocompetent organisms of the same Species as the host (the organism
corresponding to the extended organism) through transmission of a member or
offspring of a member of the infectious agent population.</obo:IAO_0000115>
+ <obo:IAO_0000115 xml:lang="en">A part of an extended organism that
itself has as part a population of one or more infectious agents and that
(1) exists as a result of processes initiated by members of the infectious
agent population and is (2) clinically abnormal in virtue of the presence
of this infectious agent population, or (3) has a disposition to bring
clinical abnormality to immunocompetent organisms of the same Species as
the host (the organism corresponding to the extended organism) through
transmission of a member or offspring of a member of the infectious agent
population.</obo:IAO_0000115>
</owl:Class>


=======================================
--- /trunk/src/ontology/ido-core/ido-main.owl Fri Dec 3 19:54:11 2010
+++ /trunk/src/ontology/ido-core/ido-main.owl Mon Dec 20 16:51:31 2010
@@ -7,6 +7,7 @@
xmlns:NCBITaxon="http://purl.org/obo/owl/NCBITaxon#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:UBERON="http://purl.org/obo/owl/UBERON#"
xmlns:GO="http://purl.org/obo/owl/GO#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
@@ -103,11 +104,36 @@

+ <!-- http://purl.org/obo/owl/OBO_REL#has_output -->
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_output"/>
+
+
+
<!-- http://purl.org/obo/owl/OBO_REL#has_role -->

<owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#has_role">
<rdfs:range
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#Role"/>
</owl:ObjectProperty>
+
+
+
+ <!-- http://purl.org/obo/owl/OBO_REL#inheres_in -->
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#inheres_in"/>
+
+
+
+ <!-- http://purl.org/obo/owl/OBO_REL#negatively_regulates -->
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#negatively_regulates"/>
+
+
+
+ <!-- http://purl.org/obo/owl/OBO_REL#positively_regulates -->
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#positively_regulates"/>
+


<!-- http://purl.org/obo/owl/OBO_REL#realized_by -->
@@ -118,12 +144,22 @@
<rdfs:range
rdf:resource="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
</owl:ObjectProperty>

+
+
+ <!-- http://purl.org/obo/owl/OBO_REL#realizes -->
+
+ <owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#realizes"/>
+
+
+
<!-- http://purl.org/obo/owl/OBO_REL#results_in_formation_of -->

<owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#results_in_formation_of">
<rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000660"/>
</owl:ObjectProperty>

+
+
<!-- http://purl.org/obo/owl/OBO_REL#unfolds_in -->

<owl:ObjectProperty
rdf:about="http://purl.org/obo/owl/OBO_REL#unfolds_in">
@@ -145,6 +181,13 @@
<owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#contained_in">
<owl:inverseOf
rdf:resource="http://www.obofoundry.org/ro/ro.owl#contains"/>
</owl:ObjectProperty>
+
+
+
+ <!-- http://www.obofoundry.org/ro/ro.owl#contains -->
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#contains"/>
+


<!-- http://www.obofoundry.org/ro/ro.owl#derived_into -->
@@ -154,6 +197,19 @@
</owl:ObjectProperty>


+
+ <!-- http://www.obofoundry.org/ro/ro.owl#derives_from -->
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#derives_from"/>
+
+
+
+ <!-- http://www.obofoundry.org/ro/ro.owl#has_part -->
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#has_part"/>
+
+
+
<!-- http://www.obofoundry.org/ro/ro.owl#has_participant -->

<owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#has_participant">
@@ -161,6 +217,31 @@
</owl:ObjectProperty>


+
+ <!-- http://www.obofoundry.org/ro/ro.owl#located_in -->
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#located_in"/>
+
+
+
+ <!-- http://www.obofoundry.org/ro/ro.owl#location_of -->
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#location_of"/>
+
+
+
+ <!-- http://www.obofoundry.org/ro/ro.owl#part_of -->
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#part_of"/>
+
+
+
+ <!-- http://www.obofoundry.org/ro/ro.owl#participates_in -->
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#participates_in"/>
+
+
+
<!-- http://www.obofoundry.org/ro/ro.owl#preceded_by -->

<owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#preceded_by">
@@ -168,6 +249,13 @@
</owl:ObjectProperty>


+
+ <!-- http://www.obofoundry.org/ro/ro.owl#precedes -->
+
+ <owl:ObjectProperty
rdf:about="http://www.obofoundry.org/ro/ro.owl#precedes"/>
+
+
+
<!--

///////////////////////////////////////////////////////////////////////////////////////
//
@@ -565,6 +653,14 @@
</rdfs:subClassOf>
</owl:Class>

+
+
+ <!-- http://purl.obolibrary.org/obo/IDO_0000416 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000416"/>
+
+
+
<!-- http://purl.obolibrary.org/obo/IDO_0000417 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000417">
@@ -2015,7 +2111,6 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000474">
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000475"/>
- <rdfs:comment>DL needs &#39;distributed throughout&#39;
</rdfs:comment>
</owl:Class>


@@ -2024,7 +2119,6 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000475">
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000506"/>
- <rdfs:comment>DL needs &#39;relatively small
area&#39;</rdfs:comment>
</owl:Class>


@@ -2286,6 +2380,10 @@
<owl:intersectionOf
rdf:parseType="Collection">
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000596"/>
<rdf:Description
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#located_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/UBERON#UBERON_0000178"/>
+ </owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
@@ -2294,7 +2392,6 @@
</owl:Class>
</owl:equivalentClass>
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000506"/>
- <rdfs:comment>DL needs FMA term.</rdfs:comment>
</owl:Class>


@@ -2313,6 +2410,10 @@
<owl:intersectionOf
rdf:parseType="Collection">
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000596"/>
<rdf:Description
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://www.obofoundry.org/ro/ro.owl#located_in"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.org/obo/owl/UBERON#UBERON_0000178"/>
+ </owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
@@ -2320,7 +2421,6 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <rdfs:comment>DL needs FMA term.</rdfs:comment>
</owl:Class>


@@ -2829,8 +2929,6 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <rdfs:comment>DL: Needs &#39;product of&#39; relation. It is a
product of this process:
-production and has_participant some (has_role some pathogen and
has_disposition some &#39;virulence factor disposition&#39;)</rdfs:comment>
</owl:Class>


@@ -2911,7 +3009,6 @@
<owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000426"/>
</owl:Restriction>
</rdfs:subClassOf>
- <rdfs:comment>IDO Error endotoxin role =&gt; endotoxin
disposition</rdfs:comment>
</owl:Class>


@@ -3149,7 +3246,6 @@
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
- <rdfs:comment>DL needs &#39;process of killing
microorganisms&#39;</rdfs:comment>
</owl:Class>


@@ -3178,7 +3274,6 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <rdfs:comment>DL needs &#39;process of killing
viruses&#39;</rdfs:comment>
</owl:Class>


@@ -3221,7 +3316,6 @@
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf
rdf:resource="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
- <rdfs:comment>DL needs &#39;process of inhibiting the growth of
microorganisms&#39;</rdfs:comment>
</owl:Class>


@@ -3828,7 +3922,6 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000617">
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000665"/>
<owl:disjointWith
rdf:resource="http://purl.org/obo/owl/CARO#CARO_0000000"/>
- <rdfs:comment>DL needs immune system component (FMA?) and
defective functioning (OGMS?)</rdfs:comment>
</owl:Class>


@@ -4060,7 +4153,6 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000630">
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000631"/>
- <rdfs:comment>DL needs &#39;hospital&#39; (OGMS?)</rdfs:comment>
</owl:Class>


@@ -4069,7 +4161,6 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000631">
<owl:disjointWith
rdf:resource="http://purl.obolibrary.org/obo/IDO_0000638"/>
- <rdfs:comment>DL needs &#39;health care
facility&#39;</rdfs:comment>
</owl:Class>


@@ -4103,7 +4194,6 @@
<!-- http://purl.obolibrary.org/obo/IDO_0000638 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000638">
- <rdfs:comment>DL needs nursing home (OGMS?)</rdfs:comment>
</owl:Class>


@@ -4368,12 +4458,255 @@
</owl:Class>


+
+ <!-- http://purl.obolibrary.org/obo/OGMS_0000031 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000031"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/OGMS_0000045 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000045"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/OGMS_0000063 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000063"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/OGMS_0000087 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000087"/>
+
+
+
+ <!-- http://purl.org/obo/owl/CARO#CARO_0000000 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/CARO#CARO_0000000"/>
+
+
+
+ <!-- http://purl.org/obo/owl/CHEBI#CHEBI_23367 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/CHEBI#CHEBI_23367"/>
+
+
+
+ <!-- http://purl.org/obo/owl/CL#CL_0000000 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/CL#CL_0000000"/>
+
+
+
+ <!-- http://purl.org/obo/owl/CL#CL_0000738 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/CL#CL_0000738"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0000003 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0000003"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0002250 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002250"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0002443 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0002443"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0006955 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006955"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0006959 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0006959"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0016265 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0016265"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0019814 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019814"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0019815 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0019815"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0032502 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0032502"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0042101 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0042101"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0043093 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0043093"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0044403 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044403"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0044406 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044406"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0044411 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0044411"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0045087 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0045087"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0048525 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0048525"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0085030 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0085030"/>
+
+
+
+ <!-- http://purl.org/obo/owl/GO#GO_0085031 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/GO#GO_0085031"/>
+
+
+
+ <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239 -->
+
+ <owl:Class
rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239"/>
+
+
+
+ <!-- http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2"/>
+
+
+
+ <!-- http://purl.org/obo/owl/TRANS#TRANS_0000000 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/TRANS#TRANS_0000000"/>
+
+
+
<!-- http://purl.org/obo/owl/TRANS#TRANS_0000002 -->

<owl:Class rdf:about="http://purl.org/obo/owl/TRANS#TRANS_0000002">
<rdfs:label>Suggested label: indirect pathogen transmission
process</rdfs:label>
</owl:Class>

+
+
+ <!-- http://purl.org/obo/owl/UBERON#UBERON_0000178 -->
+
+ <owl:Class rdf:about="http://purl.org/obo/owl/UBERON#UBERON_0000178"/>
+
+
+
+ <!-- http://www.ifomis.org/bfo/1.1/snap#DependentContinuant -->
+
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#DependentContinuant"/>
+
+
+
+ <!-- http://www.ifomis.org/bfo/1.1/snap#Disposition -->
+
+ <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Disposition"/>
+
+
+
+ <!-- http://www.ifomis.org/bfo/1.1/snap#Function -->
+
+ <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Function"/>
+
+
+
+ <!-- http://www.ifomis.org/bfo/1.1/snap#IndependentContinuant -->
+
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#IndependentContinuant"/>
+
+
+
+ <!-- http://www.ifomis.org/bfo/1.1/snap#MaterialEntity -->
+
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#MaterialEntity"/>
+
+
+
+ <!-- http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate -->
+
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate"/>
+
+
+
+ <!-- http://www.ifomis.org/bfo/1.1/snap#RealizableEntity -->
+
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/snap#RealizableEntity"/>
+
+
+
+ <!-- http://www.ifomis.org/bfo/1.1/snap#Role -->
+
+ <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Role"/>
+
+
+
+ <!-- http://www.ifomis.org/bfo/1.1/snap#Site -->
+
+ <owl:Class rdf:about="http://www.ifomis.org/bfo/1.1/snap#Site"/>
+
+
+
+ <!-- http://www.ifomis.org/bfo/1.1/span#ProcessualEntity -->
+
+ <owl:Class
rdf:about="http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"/>
+
+
+
<!--

///////////////////////////////////////////////////////////////////////////////////////
//
@@ -4383,34 +4716,24 @@
-->

<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000546">
- <rdfs:comment>DL needs &#39;end reservoir of infectious agent
role&#39;</rdfs:comment>
</rdf:Description>
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000642">
- <rdfs:comment>needs &#39;species&#39;</rdfs:comment>
</rdf:Description>
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000633">
- <rdfs:comment>DL needs &#39;another infection in a non-adjacent
location&#39;</rdfs:comment>
</rdf:Description>
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000647">
- <rdfs:comment>DL needs NCBI Taxonomy term.</rdfs:comment>
</rdf:Description>
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000648">
- <rdfs:comment>DL needs NCBI taxonomy term.</rdfs:comment>
</rdf:Description>
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000649">
- <rdfs:comment>DL needs NCBI taxonomy term.</rdfs:comment>
</rdf:Description>
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000645">
- <rdfs:comment>DL needs NCBI taxonomy term.</rdfs:comment>
</rdf:Description>
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000646">
- <rdfs:comment>DL needs NCBI taxonomy terms.</rdfs:comment>
</rdf:Description>
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000628">
- <rdfs:comment>DL needs &#39;extended period of
time&#39;</rdfs:comment>
</rdf:Description>
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000471">
- <rdfs:comment>DL needs &#39;different species&#39;</rdfs:comment>
</rdf:Description>


@@ -4432,35 +4755,6 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000454"/>
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000623"/>
</owl:members>
- </rdf:Description>
- <rdf:Description>
- <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#AllDisjointClasses"/>
- <owl:members rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000449"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000576"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000578"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000579"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000580"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000621"/>
- </owl:members>
- </rdf:Description>
- <rdf:Description>
- <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#AllDisjointClasses"/>
- <owl:members rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000409"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000410"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000411"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000412"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000413"/>
- </owl:members>
- </rdf:Description>
- <rdf:Description>
- <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#AllDisjointClasses"/>
- <owl:members rdf:parseType="Collection">
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000401"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000402"/>
- <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000403"/>
- </owl:members>
</rdf:Description>
<rdf:Description>
<rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#AllDisjointClasses"/>
@@ -4483,6 +4777,35 @@
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000490"/>
<rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000494"/>
</owl:members>
+ </rdf:Description>
+ <rdf:Description>
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#AllDisjointClasses"/>
+ <owl:members rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000401"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000402"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000403"/>
+ </owl:members>
+ </rdf:Description>
+ <rdf:Description>
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#AllDisjointClasses"/>
+ <owl:members rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000449"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000576"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000578"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000579"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000580"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000621"/>
+ </owl:members>
+ </rdf:Description>
+ <rdf:Description>
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#AllDisjointClasses"/>
+ <owl:members rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000409"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000410"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000411"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000412"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IDO_0000413"/>
+ </owl:members>
</rdf:Description>
</rdf:RDF>

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