error in installing mzR on macOSX

[Nishikant Wase]

> sessionInfo()

R version 3.1.0 (2014-04-10)

Platform: x86_64-apple-darwin13.1.0 (64-bit)

I am having error in installing mzR.  I tried directly from bioconductor 

source("http://bioconductor.org/biocLite.R")

Bioconductor version 2.14 (BiocInstaller 1.14.2), ?biocLite for help

> biocLite("mzR")

BioC_mirror: http://bioconductor.org

Using Bioconductor version 2.14 (BiocInstaller 1.14.2), R version

  3.1.0.

Installing package(s) 'mzR'

   package ‘mzR’ is available as a source package but not as a binary

Warning message:

package ‘mzR’ is not available (for R version 3.1.0) 

> 

Moreover when i tried to compile it from source, it didnt worked either:

1 error generated.

make: *** [rnetCDF.o] Error 1

ERROR: compilation failed for package ‘mzR’

* removing ‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library/mzR’

* restoring previous ‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library/mzR’

The downloaded source packages are in

‘/private/var/folders/7v/2lqj7wxj1wj5lsnk8tfxvv180000gn/T/RtmpS0kOm2/downloaded_packages’

Warning message:

In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :

  installation of package ‘mzR’ had non-zero exit status

any idea how to get around this?

This mzmatch is not working both on mac osX with R 3.0.1 and on linux 64bit R 3.0 or R2.15 version.

Any help to get around this would greatly appreciated.

thanks

Nishi

[Andris Jankevics]

To compile mzR from source you will need to have a NetCDF libraries installed on you machine. For MAC pehaps this can help: http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg11807.html.

For Ubuntu Linux: sudo apt-get install libnetcdf-dev

Andris 

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