mzmatch installation error with R 3,1,0

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Nishikant Wase

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May 24, 2014, 10:14:17 AM5/24/14
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Hi 

I am trying to install mzmatch and keep getting this error, does anyone have any idea what is going on?

> require (mzmatch.R)
Loading required package: mzmatch.R
Loading required package: rJava
Loading required package: xcms
Loading required package: mzR
Loading required package: Rcpp

 *** caught segfault ***
address 0x20, cause 'memory not mapped'

Traceback:
 1: .Call(Module__functions_names, xp)
 2: Module(m, pkg, mustStart = TRUE)
 3: doTryCatch(return(expr), name, parentenv, handler)
 4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5: tryCatchList(expr, classes, parentenv, handlers)
 6: tryCatch({    mod <- Module(m, pkg, mustStart = TRUE)    if (isTRUE(direct)) {        populate(mod, ns)    }    else {        forceAssignInNamespace(m, mod, ns)    }    assign(.moduleMetaName(m), mod, envir = ns)}, error = function(e) {    stop(sprintf("failed to load module %s from package %s\n%s",         m, pkg, conditionMessage(e)))})
 7: loadRcppModules()
 8: fun(libname, pkgname)
 9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(fun(libname, pkgname), error = identity)
13: runHook(".onLoad", env, package.lib, package)
14: loadNamespace(package, c(which.lib.loc, lib.loc))
15: doTryCatch(return(expr), name, parentenv, handler)
16: tryCatchOne(expr, names, parentenv, handlers[[1L]])
17: tryCatchList(expr, classes, parentenv, handlers)
18: tryCatch(expr, error = function(e) {    call <- conditionCall(e)    if (!is.null(call)) {        if (identical(call[[1L]], quote(doTryCatch)))             call <- sys.call(-4L)        dcall <- deparse(call)[1L]        prefix <- paste("Error in", dcall, ": ")        LONG <- 75L        msg <- conditionMessage(e)        sm <- strsplit(msg, "\n")[[1L]]        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")        if (is.na(w))             w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],                 type = "b")        if (w > LONG)             prefix <- paste0(prefix, "\n  ")    }    else prefix <- "Error : "    msg <- paste0(prefix, conditionMessage(e), "\n")    .Internal(seterrmessage(msg[1L]))    if (!silent && identical(getOption("show.error.messages"),         TRUE)) {        cat(msg, file = stderr())        .Internal(printDeferredWarnings())    }    invisible(structure(msg, class = "try-error", condition = e))})
19: try({    ns <- loadNamespace(package, c(which.lib.loc, lib.loc))    env <- attachNamespace(ns, pos = pos, deps)})
20: library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc)
21: .getRequiredPackages2(pkgInfo, quietly = quietly)
22: library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc)
23: .getRequiredPackages2(pkgInfo, quietly = quietly)
24: library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,     warn.conflicts = warn.conflicts, quietly = quietly)
25: doTryCatch(return(expr), name, parentenv, handler)
26: tryCatchOne(expr, names, parentenv, handlers[[1L]])
27: tryCatchList(expr, classes, parentenv, handlers)
28: tryCatch(library(package, lib.loc = lib.loc, character.only = TRUE,     logical.return = TRUE, warn.conflicts = warn.conflicts, quietly = quietly),     error = function(e) e)
29: require(mzmatch.R)

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: 



> biocLite(c("lima"))
Using Bioconductor version 2.14 (BiocInstaller 1.14.2), R version
  3.1.0.
Installing package(s) 'lima'
Warning message:
package ‘lima’ is not available (for R version 3.1.0) 

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