problems with mzmatchR installation in R version 3.0.2

[maria....@gmail.com]

Dear all,

Have you noticed any problem installing mzmatch.R package in R version 3.0.2?. Either installing it from MZMatch.R_1.0.tgz or  using install.packages("mzmatch.R", repos="http://R-Forge.R-project.org") I got the same error

Warning in install.packages :

  package ‘~/Downloads/mzmatch.R_1.0-2.tar’ is not available (for R version 3.0.2)

Are any of you aware about mzmatch.R package and R 3.0.2

Please find bellow my configuration

Any help would be appreciated

R version 3.0.2 (2013-09-25)

Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale:

[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:

[1] stats     graphics  grDevices utils     datasets  methods  

[7] base     

other attached packages:

[1] BiocInstaller_1.12.0

[Andris Jankevics]

Dear Maria,

You should follow these instructions to install mzmatch.R:

http://mzmatch.sourceforge.net/tutorial.mzmatch.r.advanced.php

Best Regards,

Andris

--
You received this message because you are subscribed to the Google Groups "Ideom" group.
To unsubscribe from this group and stop receiving emails from it, send an email to ideom+un...@googlegroups.com.
To post to this group, send email to id...@googlegroups.com.
Visit this group at http://groups.google.com/group/ideom.
For more options, visit https://groups.google.com/groups/opt_out.

--

Andris Jankevics

Research associate

Faculty of Life Sciences, Manchester Institute of Biotechnology, 

University of Manchester,

Manchester, United Kingdom

[maria....@gmail.com]

Dear Andris,

Thank you very much for your quick response,

I've been trying to follow the instructions you mention with no success. However, it seems that there is firstable a problem with the connection. This is the error message 

source ("http://puma.ibls.gla.ac.uk/mzmatch.R/install_mzmatch.R")

Error in file(filename, "r", encoding = encoding) : 

  cannot open the connection

In addition: Warning message:

In file(filename, "r", encoding = encoding) :

  unable to connect to 'puma.ibls.gla.ac.uk' on port 80.

Alternatively I have download the tar.gz file package from (https://r-forge.r-project.org/R/?group_id=923)  and I install it in R from archive file, then it pops up the error that I in the previous message:  

 install.packages("~/Downloads/mzmatch.R_2.0-6-2.tar", repos = NULL)

Warning in install.packages :

  package ‘~/Downloads/mzmatch.R.0-6-2.tar’ is not available (for R version 3.0.2)

Error in install.packages : file ‘~/Downloads/mzmatch.R_2.0-6-2.tar’ is not an OS X binary package

Finally, I have tried to  add the unzipped mzmatch.R library package folder directly to my R library folder  and when I call it from R, this is the result:

library("mzmatch.R")

Error: package ‘mzmatch.R’ was built before R 3.0.0: please re-install it

Therefore, I think that the problem might be related to R version. I that so?. Have you ever noticed such installation issues with mzmatch?

Thanks a lot for your help and cooperation.

To unsubscribe from this group and stop receiving emails from it, send an email to ideom+unsubscribe@googlegroups.com.

To post to this group, send email to id...@googlegroups.com.
Visit this group at http://groups.google.com/group/ideom.
For more options, visit https://groups.google.com/groups/opt_out.

[Gavin Blackburn]

Hi Maria,

 

Try running this code first when you open R and then repeat what you have been doing previously:

 

setInternet2()

 

Cheers,

 

Gavin.

To unsubscribe from this group and stop receiving emails from it, send an email to ideom+un...@googlegroups.com.

To post to this group, send email to id...@googlegroups.com.
Visit this group at http://groups.google.com/group/ideom.
For more options, visit https://groups.google.com/groups/opt_out.

--

Andris Jankevics

Research associate

Faculty of Life Sciences, Manchester Institute of Biotechnology, 

University of Manchester,

Manchester, United Kingdom

 

--

You received this message because you are subscribed to the Google Groups "Ideom" group.

To unsubscribe from this group and stop receiving emails from it, send an email to ideom+un...@googlegroups.com.

[maria....@gmail.com]

Dear all,

Thank you very much for  your fast responses and kind help

I am happy to say that I have just found the workaround to the installation issues of mzmatch. The problem was trying to install this package using Rstudio. I am quite new to R so I really do not know what was exactly the issue. I just can say that finally I have been able to  instal mzmatch by by-passing Rstudio and using directly the R console and from file "mzmatch.R.0-6-2.tar" in my local downloads folder. 

So happy now to be finally ready to evaluate mzmatch performance with my own data 

Thanks again,

maria