Ideom

Hi, Since I was not able to perform the .D to mzXML file conversion step as per the the Ideom.xlsb

Hi, I have encountered a problem using the macro - when I click to run mzMatch to combine and

Downgrading R from 3.3.2 to 3.3.1 did the trick. I still had plenty of issues but manual package

Hello Andris, thanks for the fast reply. The gap filler options are: PeakML.GapFiller(nSlaves=cores,

The default xcms parameters in the IDEOM are set to peak height. You can easily change this to area

Hi Adriana, I have not seen this error before, but it looks like an issue with the file format.

Hi, I'm struggling with the ideom RT calculator. Every time I run it I am getting an error

I have been asked to post the entire code, which is pasted below: > setwd("C:/Users/User/

Hi Nathaly, The error is occurring earlier in the pipeline and therefore sequential files are not

Yes, my guess is the processing crashed either at the gap-filling or related peaks function. Try

There are 186 authentic standard with sRTs and cRts in the Ideom. Understand that we need to import

For 32bit R it can only access 4Gb of RAM, so you'll need to set the available RAM to something

Dear All, first, congrat to the developers of this really nice Excel interface with a lot of

When I try to use "c) Run XCMS to pick peaks and convert to peakML files" I keep getting

Is the a way to 'covert RAW to mzXML' on RAWs that contain multiple negative polarity mode

I tried setting the "Minimum detections #" in cell E19 to 1, but I am still having problems

The advice posted in this thread has helped me ahead. Thank you for your time. On Wednesday, 28 May

Hi Lucas, Thanks for reporting this, and apologies for the bug. I think the best way to overcome this

To compile mzR from source you will need to have a NetCDF libraries installed on you machine. For MAC

Hi, as fas as I can see from error message you are using 32-bit Java and R. By default it can

Hi I am trying to install mzmatch and keep getting this error, does anyone have any idea what is

Hi Darren, I just managed to try a new set of samples and i skyped the macro. Everything worked fine.

Darren, Thanks, the files are indeed mzxml and there are centroided data in the files. I have the

Dear Darren, Thanks a lot for your fast response I have installed my R package in other local than

Dear all, Thank you very much for your fast responses and kind help I am happy to say that I have

Hi all, FYI, there was a bug in IDEOM version 19 that gave the below error for some datasets. The

Hi all, This is an FYI. I've been having some problems with some data sets recently. During the

Hi, I have been using Ideom to process my metabolomics data (v18) and I am having problems with the

Hi Sophia, I think RankProd is ok, although I don't use it at the moment. Let me know if you want

Hi Darren, Usually, i record my mass spectrum in profile mode. I will try in centroid mode in order