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Icy imaging
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jkm...@gmail.com
,
Stephane
3
4/5/19
Q&A
Bio format error (file serie batch)
Hello ! Thanks for the answer, Attached are the protocols I used (V001 without batch processing). And
unread,
batch
loop
protocols
spot-detector
Q&A
Bio format error (file serie batch)
Hello ! Thanks for the answer, Attached are the protocols I used (V001 without batch processing). And
4/5/19
Dmitry Ershov
,
Stephane
3
6/18/18
Q&A
Size of detection spot
Thanks! Dmitry. On Mon, Jun 18, 2018 at 4:40 PM, Stephane <stephane.da...@pasteur.fr>
unread,
spot-detector
Q&A
Size of detection spot
Thanks! Dmitry. On Mon, Jun 18, 2018 at 4:40 PM, Stephane <stephane.da...@pasteur.fr>
6/18/18
Veijo
,
Stephane
5
4/17/18
Q&A
Track manager in protocols/batch
Hi Veijo, Thanks for your feedback and remarks :) In fact even if i wrote the "Block"
unread,
spot-detector
tracking
Q&A
Track manager in protocols/batch
Hi Veijo, Thanks for your feedback and remarks :) In fact even if i wrote the "Block"
4/17/18
Jean-Yves Tinevez
,
Fabrice de Chaumont
3
2/8/18
Q&A
Scripting: How to turn SpotDetector output in a list of ROIs?
On Thursday, February 8, 2018 at 5:50:35 PM UTC+1, Fabrice de Chaumont wrote: Hi ! If you can access
unread,
ROI
script
spot-detector
Q&A
Scripting: How to turn SpotDetector output in a list of ROIs?
On Thursday, February 8, 2018 at 5:50:35 PM UTC+1, Fabrice de Chaumont wrote: Hi ! If you can access
2/8/18
Alanah Pieters
,
Stephane
7
3/8/18
Q&A
Spot detector - resume results
Hello Stephane, As my research is progressing, it seems like I will need this kind of analysis we
unread,
spot-detector
Q&A
Spot detector - resume results
Hello Stephane, As my research is progressing, it seems like I will need this kind of analysis we
3/8/18
X. Qin
, …
nicolas
12
1/23/18
Q&A
Some question about ROI and intensity_background subtracted data
Hi Nicolas, Thank you sooo much for your reply. I have some further questions regarding your
unread,
ROI
spot-detector
Q&A
Some question about ROI and intensity_background subtracted data
Hi Nicolas, Thank you sooo much for your reply. I have some further questions regarding your
1/23/18
Antonio Nour
,
Stephane
4
12/18/17
Q&A
How to count cells with different colors in a single image?
Hello Antonio, Well in fact you can also do the detection in blue channel, just select correct
unread,
Spot
cell
color
count
spot-detector
Q&A
How to count cells with different colors in a single image?
Hello Antonio, Well in fact you can also do the detection in blue channel, just select correct
12/18/17
Yasmine Khalil
, …
Alexandre Dufour
5
1/5/18
Q&A
pixels' size and distance bto the periphery of a nucleus
No answer...? I think it must be based on the pixels' size along x and y axis, but I'm not
unread,
ROI
protocols
spot-detector
Q&A
pixels' size and distance bto the periphery of a nucleus
No answer...? I think it must be based on the pixels' size along x and y axis, but I'm not
1/5/18
simone milan
,
Fabrice de Chaumont
2
10/9/17
Q&A
scale on spot detector
Hi This message usually comes when you set scales that are too high for the resolution of your image,
unread,
Spot
result
spot-detector
Q&A
scale on spot detector
Hi This message usually comes when you set scales that are too high for the resolution of your image,
10/9/17
Yasmine Khalil
, …
Alexandre Dufour
5
5/29/17
Q&A
Some sampling and detection questions on Active Contour, Wavelet Spot Detector and ROI Inclusion analysis.
Thank you Alexandre, you cleared it up a lot! :D Next time I will seperate my questions, it's
unread,
Distance
ROI
Segmentation
Spot
analysis
cell
contour
detection
general-error
spot-detector
Q&A
Some sampling and detection questions on Active Contour, Wavelet Spot Detector and ROI Inclusion analysis.
Thank you Alexandre, you cleared it up a lot! :D Next time I will seperate my questions, it's
5/29/17
Ben Lansdell
, …
Alexandre Dufour
3
3/8/17
Q&A
Providing input images to "Spot tracking with excel export" protocol in headless mode
Hi Ben, I've updated the documentation on the plugin's web page (thanks to Stephane's
unread,
command-line
protocols
spot-detector
tracking
Q&A
Providing input images to "Spot tracking with excel export" protocol in headless mode
Hi Ben, I've updated the documentation on the plugin's web page (thanks to Stephane's
3/8/17
Robert Bell
2/9/17
Q&A
Any programmers available to help with project?
I am looking for programmers familiar with Icy or other image processing software for a compensated
unread,
Track
batch
processor
protocols
spot-detector
Q&A
Any programmers available to help with project?
I am looking for programmers familiar with Icy or other image processing software for a compensated
2/9/17
krishna kanth chitta
,
Stephane
2
12/13/16
Q&A
using ImageJ plugin inside rangeloop block for getting "per ROI" results
Hi Kristina, Why don't you directly process the Labeled image with SpotCaliper so you get all
unread,
ROI
detection
imageJ
loop
plugin
protocols
spot-detector
Q&A
using ImageJ plugin inside rangeloop block for getting "per ROI" results
Hi Kristina, Why don't you directly process the Labeled image with SpotCaliper so you get all
12/13/16
Paris Morgan
,
Stephane
2
8/4/16
Q&A
Algae real time cell counts
Hello, Line ROI cannot do that as there are only intersection tool for intensity profile analysis.
unread,
Icy
ROI
Spot
cell
detection
flow
general-error
micro-manager
spot-detector
Q&A
Algae real time cell counts
Hello, Line ROI cannot do that as there are only intersection tool for intensity profile analysis.
8/4/16
wiggs 38
,
Stephane
4
7/19/16
Q&A
Counting coloured images
Hi George, Thanks for providing an image so i can test. Indeed the image really require you to use
unread,
Icy
count
spot-detector
Q&A
Counting coloured images
Hi George, Thanks for providing an image so i can test. Indeed the image really require you to use
7/19/16
Nicoco
,
Stephane
6
4/26/16
Q&A
Spot Detector detects many spots on edges of mask
Thanks! My problem was that I had to link my sequence to "input sequence" and to "
unread,
ROI
protocols
spot-detector
Q&A
Spot Detector detects many spots on edges of mask
Thanks! My problem was that I had to link my sequence to "input sequence" and to "
4/26/16
Katie Hansel
,
thibault...@yahoo.fr
6
5/20/15
Q&A
Spot detector
ok, perfect! Cheers, Thibault Le mardi 19 mai 2015 11:36:38 UTC+2, Katie Hansel a écrit : Dear
unread,
spot-detector
tracking
Q&A
Spot detector
ok, perfect! Cheers, Thibault Le mardi 19 mai 2015 11:36:38 UTC+2, Katie Hansel a écrit : Dear
5/20/15
Magali SOYER
, …
Cláudia Almeida
11
8/6/19
Q&A
Colocalization over 3 channels
Hi There was no error message but block 16 never got GREEN. thanks Claudia On Monday, May 13, 2019 at
unread,
colocalization
contours
multichannel
spot-detector
Q&A
Colocalization over 3 channels
Hi There was no error message but block 16 never got GREEN. thanks Claudia On Monday, May 13, 2019 at
8/6/19
Marcos Nieves
,
Stephane
2
3/9/15
Q&A
Spots detection
Hi Marcos, Sorry for the late answer. I tried the spot detector on your dataset and actually i can
unread,
Icy
Spot
TIRF
movie
pre-treatment
spot-detector
Q&A
Spots detection
Hi Marcos, Sorry for the late answer. I tried the spot detector on your dataset and actually i can
3/9/15
Ksenia Oguievetskaia
,
Stephane
6
11/3/14
Q&A
Endosomal detection
Hi, I tried to do a mean Z projection and using the Spot Detection afterward.. it does help. But i
unread,
detection
protocols
spot-detector
Q&A
Endosomal detection
Hi, I tried to do a mean Z projection and using the Spot Detection afterward.. it does help. But i
11/3/14
Kanoelani Pilobello
, …
Romain Durand
17
2/17/15
Q&A
multiple ROI measurement in a folder loop
Everything works perfectly! Sorry for the inconvenience and thank you very much for your help. Romain
unread,
folder
loop
spot-detector
Q&A
multiple ROI measurement in a folder loop
Everything works perfectly! Sorry for the inconvenience and thank you very much for your help. Romain
2/17/15
Blanc Olivier
,
thibault...@yahoo.fr
3
5/28/14
Q&A
pointing accuracy of spot detector
Thanks for the answer and for the link.
unread,
spot-detector
Q&A
pointing accuracy of spot detector
Thanks for the answer and for the link.
5/28/14
Dmitry Sorokin
,
Stephane
5
3/21/14
Q&A
Spot detector gives different result for the cropped image
Yeah, I've reported the bug. Hope it will be fixed soon.. :) Best, --Dmitry 2014-03-21 13:54 GMT+
unread,
spot-detector
Q&A
Spot detector gives different result for the cropped image
Yeah, I've reported the bug. Hope it will be fixed soon.. :) Best, --Dmitry 2014-03-21 13:54 GMT+
3/21/14
AMAR Majid
,
Fabrice de Chaumont
6
3/14/14
Q&A
i have 3 bugs with Spot detector and ICY
Hi Majid, Thank you for your message. The ROI ordering is more a problem of the kernel. We are
unread,
spot-detector
Q&A
i have 3 bugs with Spot detector and ICY
Hi Majid, Thank you for your message. The ROI ordering is more a problem of the kernel. We are
3/14/14
thiba...@gmail.com
, …
X. Qin
7
6/22/16
Q&A
Intensity information on spot detector
Thank you Stephane!! On Wednesday, 22 June 2016 21:05:57 UTC+8, Stephane wrote: Hi Xianan, When you
unread,
spot-detector
Q&A
Intensity information on spot detector
Thank you Stephane!! On Wednesday, 22 June 2016 21:05:57 UTC+8, Stephane wrote: Hi Xianan, When you
6/22/16
François L. (MNHN)
, …
Jeremy Pike
3
12/10/15
Q&A
Help for Wavelet spot detector in Protocols
Hi I am trying to do the same thing as Francois. I have used connected components to create the spots
unread,
ROI
protocols
spot-detector
Q&A
Help for Wavelet spot detector in Protocols
Hi I am trying to do the same thing as Francois. I have used connected components to create the spots
12/10/15
Noémie Jelly
,
Julien
2
12/18/13
Q&A
Request - Batch in spot detector
Hello Noemie, I hope the attached script will help. Please, note that the script will linearly change
unread,
batch
detection
feature-request
spot-detector
Q&A
Request - Batch in spot detector
Hello Noemie, I hope the attached script will help. Please, note that the script will linearly change
12/18/13
Eric Denarier
,
IcyLyd
5
12/14/13
Q&A
Spot Detector Bug (either from Spot detector OR from me)
Hi IcyLyd, I finally understood that Spot detector is a frequency filter and not a spot detector (am
unread,
bug-report
spot-detector
Q&A
Spot Detector Bug (either from Spot detector OR from me)
Hi IcyLyd, I finally understood that Spot detector is a frequency filter and not a spot detector (am
12/14/13
Vanina Gabriela Salgado
,
Stephane
4
11/26/13
Q&A
install plugin
Hi Vanina, You can directly edit the pixel size by clicking on the "Edit" button in
unread,
Icy
spot-detector
Q&A
install plugin
Hi Vanina, You can directly edit the pixel size by clicking on the "Edit" button in
11/26/13
Daniele Vilone
, …
louise-laure
3
10/25/13
Q&A
How to measure volume and suface of a cell filmed in a .tiff 4-d stack
Hi Alexandre, I just tried out your protocole on your image and it reports a bug (I clicked on the
unread,
Icy
ROI
detection
spot-detector
Q&A
How to measure volume and suface of a cell filmed in a .tiff 4-d stack
Hi Alexandre, I just tried out your protocole on your image and it reports a bug (I clicked on the
10/25/13