Groups
Groups
Sign in
Groups
Groups
Icy imaging
Conversations
Labels
-
2d
3D
4D
6
Beginner
CLEM
Canvas
Convexify
Distance
DrosoTrack
EC-Clem
Erode
EzPlug
FIJI
FlyLimbTracker
GPU
GUI
ISBI
Icy
Java
Javascript
Mac
Manders
MeanGrayLevel
Morphomaths
NullPointerException
OSX
Pearson
ROI
RelativeOpticalDensi
SODA
STORM
Segmentation
Spot
TIRF
Thank
Thresholder
Track
VTK
a
active-contours
analysis
annotations
announce
api
automation
avi-not-loading
batch
bug-report
capillar
cell
class
co-motion
colocalisation
colocalization
color
colour
colouranalisys
colourchange
command-line
computation
contour
contours
correlation
count
crash
crop
curved
data
deployment
detection
developper
differences
dimension
documentation
download
eclipse
equalization
error
export
feature-request
filaments
filter
flame
flow
fluorescence
folder
format
framepersecond
framerate
freeze
general-error
grid
height
histogram
imageJ
implementation
interface
interpolate
interpretation
intravital
invalid
irb
job
keyboard
knowhow
kymograph
l
layer
length
library
linux
load-error
loop
mapping
measurements
merge
metadata
micro-manager
microcirculation
microscopy
migration
montage
mouse
movie
multichannel
n
name
optical_density
overlapping
picture
plugin
png
polygon
pre-treatment
processor
protocols
python
randomly
rating
release
render
result
rgb
save
scalebar
screenshot
script
shortcuts
slow
spim
spot-detector
spreadsheet
start-error
statistics
studio
surface
te
teaching
threshold
tiff
time
track-manager
tracking
tracking_generator
tracks
training
tutorial
ubuntu
update
video
vizualization
volume
webcam
window
you
About
Send feedback
Help
Icy imaging
1–30 of 1607
This group is now closed. Use the
Image.sc community forum
to get support for Icy.
Mark all as read
Report group
0 selected
Sergio Hernández
1/8/20
Q&A
XML files in protocols
Hi there is a way to save trackgroups as xml files in protocols?, im able to calculate speed with
unread,
protocols
track-manager
tracking
Q&A
XML files in protocols
Hi there is a way to save trackgroups as xml files in protocols?, im able to calculate speed with
1/8/20
jkm...@gmail.com
,
Stephane
3
4/5/19
Q&A
Bio format error (file serie batch)
Hello ! Thanks for the answer, Attached are the protocols I used (V001 without batch processing). And
unread,
batch
loop
protocols
spot-detector
Q&A
Bio format error (file serie batch)
Hello ! Thanks for the answer, Attached are the protocols I used (V001 without batch processing). And
4/5/19
dariomel
,
Stephane
3
12/27/18
Q&A
ROI Statistics block ignores feature selections when Icy runs in headless mode
I already had the latest version of Icy. I updated the ROI Statistics plugin to version 5.6.11.0. Now
unread,
ROI
bug-report
protocols
result
Q&A
ROI Statistics block ignores feature selections when Icy runs in headless mode
I already had the latest version of Icy. I updated the ROI Statistics plugin to version 5.6.11.0. Now
12/27/18
Miguel
,
Stephane
2
9/12/18
Q&A
Protocol SDK NumberFormatException
Thanks, i replied on the image.sc forum :) Le jeudi 6 septembre 2018 15:00:26 UTC+2, Miguel a écrit :
unread,
Java
protocols
Q&A
Protocol SDK NumberFormatException
Thanks, i replied on the image.sc forum :) Le jeudi 6 septembre 2018 15:00:26 UTC+2, Miguel a écrit :
9/12/18
Michael Delves
,
Stephane
3
7/3/18
Q&A
Using the "crop and keep ROI" script for images with multiple ROIs
Hi Stephane, I've been using Crop_sequence_to_ROI but I have irregular polygon ROIs and it only
unread,
ROI
crop
protocols
Q&A
Using the "crop and keep ROI" script for images with multiple ROIs
Hi Stephane, I've been using Crop_sequence_to_ROI but I have irregular polygon ROIs and it only
7/3/18
Leon de Boer
,
Stephane
3
12/19/17
Q&A
Add manually drawn ROIs to protocols
Thank you very much! On Tuesday, 19 December 2017 16:26:24 UTC, Stephane wrote: Hi Leon, You just
unread,
ROI
active-contours
protocols
Q&A
Add manually drawn ROIs to protocols
Thank you very much! On Tuesday, 19 December 2017 16:26:24 UTC, Stephane wrote: Hi Leon, You just
12/19/17
Yasmine Khalil
, …
Alexandre Dufour
5
1/5/18
Q&A
pixels' size and distance bto the periphery of a nucleus
No answer...? I think it must be based on the pixels' size along x and y axis, but I'm not
unread,
ROI
protocols
spot-detector
Q&A
pixels' size and distance bto the periphery of a nucleus
No answer...? I think it must be based on the pixels' size along x and y axis, but I'm not
1/5/18
Andrew Seeber
,
Alexandre Dufour
3
8/31/17
Q&A
Link spot detection to segmented masks over time
Dear Alexandre, Thanks a lot, the "ROI inclusion analysis" does exactly as advertised. I
unread,
ROI
Spot
detection
protocols
time
Q&A
Link spot detection to segmented masks over time
Dear Alexandre, Thanks a lot, the "ROI inclusion analysis" does exactly as advertised. I
8/31/17
Ben Lansdell
, …
Alexandre Dufour
3
3/8/17
Q&A
Providing input images to "Spot tracking with excel export" protocol in headless mode
Hi Ben, I've updated the documentation on the plugin's web page (thanks to Stephane's
unread,
command-line
protocols
spot-detector
tracking
Q&A
Providing input images to "Spot tracking with excel export" protocol in headless mode
Hi Ben, I've updated the documentation on the plugin's web page (thanks to Stephane's
3/8/17
Mike Kress
,
Stephane
3
2/21/17
Q&A
Change metadata
Hi stephane, Merci beaucoup. Michel Le 21/02/2017 à 14:56, Stephane a écrit : Hi Michel, I just added
unread,
batch
folder
protocols
Q&A
Change metadata
Hi stephane, Merci beaucoup. Michel Le 21/02/2017 à 14:56, Stephane a écrit : Hi Michel, I just added
2/21/17
Ben Lansdell
,
Stephane
4
2/21/17
Q&A
Protocols and missing SnakeTracker plugin
Hi, I think the Protocols plugin was trying to reopen old protocols by default for some reason...
unread,
plugin
protocols
tracking
Q&A
Protocols and missing SnakeTracker plugin
Hi, I think the Protocols plugin was trying to reopen old protocols by default for some reason...
2/21/17
Robert Bell
2/9/17
Q&A
Any programmers available to help with project?
I am looking for programmers familiar with Icy or other image processing software for a compensated
unread,
Track
batch
processor
protocols
spot-detector
Q&A
Any programmers available to help with project?
I am looking for programmers familiar with Icy or other image processing software for a compensated
2/9/17
Mike Kress
,
Alexandre Dufour
3
1/25/17
Q&A
Substract Two ROI Lists
Hi Alexandre, 1) Yes you are right I don't need , I forgot to remove this block "inclusion
unread,
ROI
cell
feature-request
protocols
Q&A
Substract Two ROI Lists
Hi Alexandre, 1) Yes you are right I don't need , I forgot to remove this block "inclusion
1/25/17
Mike Kress
,
Alexandre Dufour
3
1/24/17
Q&A
Remove border objects
Hi alexandre, I am sending you a short protocol and an image. When you run this protocol ROI ellipse
unread,
ROI
protocols
Q&A
Remove border objects
Hi alexandre, I am sending you a short protocol and an image. When you run this protocol ROI ellipse
1/24/17
Mike Kress
,
Stephane
4
1/15/17
Q&A
Subtract ROI
Hi Stéphane, Thank you for your answer. It works. Michel Le jeudi 12 janvier 2017 11:36:43 UTC+1,
unread,
ROI
protocols
Q&A
Subtract ROI
Hi Stéphane, Thank you for your answer. It works. Michel Le jeudi 12 janvier 2017 11:36:43 UTC+1,
1/15/17
Jeremy Pike
,
Stephane
4
1/6/17
Q&A
Efficient ROI merging
Hi Jeremy, Thanks for the sample, i was able to reproduce it ! The mix of 3D and 2D ROI make the
unread,
ROI
protocols
script
slow
Q&A
Efficient ROI merging
Hi Jeremy, Thanks for the sample, i was able to reproduce it ! The mix of 3D and 2D ROI make the
1/6/17
krishna kanth chitta
,
Stephane
2
12/13/16
Q&A
using ImageJ plugin inside rangeloop block for getting "per ROI" results
Hi Kristina, Why don't you directly process the Labeled image with SpotCaliper so you get all
unread,
ROI
detection
imageJ
loop
plugin
protocols
spot-detector
Q&A
using ImageJ plugin inside rangeloop block for getting "per ROI" results
Hi Kristina, Why don't you directly process the Labeled image with SpotCaliper so you get all
12/13/16
Stephane
, …
David G
10
12/8/16
Announcement
Spot Tracking finally compatible with Script and Protocols !
Hi David, You cannot import tracks from the XLS output, currently the Track Manager itself does not
unread,
batch
protocols
track-manager
tracking
Announcement
Spot Tracking finally compatible with Script and Protocols !
Hi David, You cannot import tracks from the XLS output, currently the Track Manager itself does not
12/8/16
Tamlyn Peel
,
Stephane
3
1/5/17
Q&A
Calling plugins (median filter) from javascript script
This one is tricky but well done to make it work ! It can be useful for people experiencing the same
unread,
Javascript
protocols
Q&A
Calling plugins (median filter) from javascript script
This one is tricky but well done to make it work ! It can be useful for people experiencing the same
1/5/17
Jeremy Pike
, …
Alexandre Dufour
4
9/12/16
Q&A
Error messages when calibrating for voxel size within a javascript block
Hi Great, thank you. Yes it works fine now :) Best Jeremy
unread,
bug-report
general-error
protocols
Q&A
Error messages when calibrating for voxel size within a javascript block
Hi Great, thank you. Yes it works fine now :) Best Jeremy
9/12/16
Benjamin Cappe
,
Alexandre Dufour
3
10/21/17
Q&A
3D+t segmentation
Hi Alexandre, I know that this thread was open long time ago, but I tried analysis using 2D by other
unread,
3D
4D
analysis
cell
contours
protocols
time
tracking
Q&A
3D+t segmentation
Hi Alexandre, I know that this thread was open long time ago, but I tried analysis using 2D by other
10/21/17
Melissa Fender
,
Stephane
2
7/19/16
Q&A
Cell tracking protocol
Hi Melissa, Sorry for not having replied sooner... Just to know, did you find a solution to your
unread,
ROI
Thresholder
contours
data
protocols
tracking
Q&A
Cell tracking protocol
Hi Melissa, Sorry for not having replied sooner... Just to know, did you find a solution to your
7/19/16
Nicoco
4/26/16
Q&A
Iterate over a value in a sequence batch file, save results each time
Hello all, Is it possible to iterate over a value in sequence batch file, pass this value to a block,
unread,
batch
protocols
Q&A
Iterate over a value in a sequence batch file, save results each time
Hello all, Is it possible to iterate over a value in sequence batch file, pass this value to a block,
4/26/16
Nicoco
,
Stephane
3
4/26/16
Q&A
"Append file path" removes full path and outputs file name only
Glad you sorted it :) Indeed it's not easy to deal with these Text / File stuff. Depending the
unread,
batch
protocols
Q&A
"Append file path" removes full path and outputs file name only
Glad you sorted it :) Indeed it's not easy to deal with these Text / File stuff. Depending the
4/26/16
Nicoco
,
Stephane
6
4/26/16
Q&A
Spot Detector detects many spots on edges of mask
Thanks! My problem was that I had to link my sequence to "input sequence" and to "
unread,
ROI
protocols
spot-detector
Q&A
Spot Detector detects many spots on edges of mask
Thanks! My problem was that I had to link my sequence to "input sequence" and to "
4/26/16
andrea.s...@gmail.com
, …
impa...@gmail.com
3
8/15/16
Q&A
Colocalisation study
Hi, I am having a very similar problem. Two of my proteins partially overlap when transfected in
unread,
Manders
Pearson
ROI
colocalisation
protocols
studio
Q&A
Colocalisation study
Hi, I am having a very similar problem. Two of my proteins partially overlap when transfected in
8/15/16
Alexis
,
Stephane
3
5/27/15
Q&A
Writing a script in Javascript block
Hi Alexis, Sometime we observed the component we use for editing text in the script editor fails to
unread,
Javascript
protocols
script
Q&A
Writing a script in Javascript block
Hi Alexis, Sometime we observed the component we use for editing text in the script editor fails to
5/27/15
Ricard Delgado Gonzalo
,
Alexandre Dufour
5
2/9/15
Q&A
Make a block protocol fail
Great! I'll use those methods. Cheers, Ricard On Monday, February 9, 2015 at 11:48:57 AM UTC+1,
unread,
protocols
Q&A
Make a block protocol fail
Great! I'll use those methods. Cheers, Ricard On Monday, February 9, 2015 at 11:48:57 AM UTC+1,
2/9/15
MLB
,
Alexandre Dufour
6
2/9/15
Q&A
Make a loop on Optical flow to change regularization parameter automatically
Shame on me, I didn't use the last version of ICY. With the last one, 1.6.0.1, it's ok. Happy
unread,
flow
loop
protocols
Q&A
Make a loop on Optical flow to change regularization parameter automatically
Shame on me, I didn't use the last version of ICY. With the last one, 1.6.0.1, it's ok. Happy
2/9/15
IcyLyd
,
Stephane
5
1/13/15
Q&A
Create folder bloc
Ah OK, great ! I will use the FileUtil.createDir more oftenly now ... many thanks :) Le mardi 13
unread,
bug-report
folder
protocols
Q&A
Create folder bloc
Ah OK, great ! I will use the FileUtil.createDir more oftenly now ... many thanks :) Le mardi 13
1/13/15