Icy imaging

Hi Raaghavi, You can do that really easily, just use the HK-Means plugin to find your cells, you will

I'm using Icy to follow the size, shape and movement of patterns on the surface of a water body.

Hi, Given your image it's indeed very complicated to correctly count the number of cell. I made

Dear Alexandre, Thanks a lot, the "ROI inclusion analysis" does exactly as advertised. I

Hello there, I use the ISBI Challenge track importer and I import 9229 single tracks (tracks that

Thank you Alexandre, you cleared it up a lot! :D Next time I will seperate my questions, it's

Hi Louise Laure, Sorry for the late reply.. just in case, did you tried this plugin : http://icy.

Hi Kristina, Why don't you directly process the Labeled image with SpotCaliper so you get all

Hello, Line ROI cannot do that as there are only intersection tool for intensity profile analysis.

Hi Stephane and Alexandre, Thank you very much for your suggestions. I will try and adopt it. However

If you want intensity in other channels, you have indeed to use the ROI informations. For that you

Hi, I tried to do a mean Z projection and using the Spot Detection afterward.. it does help. But i

Hi Mayank, As far i know we don't have any plugin calculating the Feret's diameter for now.

Hello Noemie, I hope the attached script will help. Please, note that the script will linearly change

Hello together, as I was searching the web for any publications and hints for what is the reason for

Hi Alexandre, I just tried out your protocole on your image and it reports a bug (I clicked on the

Hi Alexandre, Thank you a lot for your answer. Indeed it's quite hard to analyze, even with the

Hi Anke, This is a good idea. I flag it as feature request. Best, Fabrice On Thursday, July 11, 2013