Icy imaging

Hi Raaghavi, You can do that really easily, just use the HK-Means plugin to find your cells, you will

Hi Masoud, Oh indeed it was completely different from what i imagined. Glad you got it to work using

Dear Masoud, If your developer login is MasoudR then you need to change the package name of your

Hi Masoud, Glad to hear that :) Thanks for your help in getting it working ! Best, - Stephane Le

Dear Stephane, the begin/endUpdate doesn't help. I'll post some code below: Initial setup of

Hi Masoud, Thanks for your report ! I just uploaded a new version of Micro-Manager plugin for Icy to

Hi Masoud, I'm using VTK to do that (it can do it in 3D) but OpenCV seems to be able to do it as

I'm using Icy to follow the size, shape and movement of patterns on the surface of a water body.

Hi Stephen, Thanks for all your detailed reports! Unfortunately I cannot reproduce your findings: I

Hi Masoud, The screen shot does it, that is expected as screen shot button just convert / flatten the

Hi Stephane, Thank you for the quick solution, it works properly now! Cheers, Masoud On Thursday,

Hi Masoud, Thanks for your report, it seems to be a bug in the way binning property is handled (it

Thanks for the extras information, the text cut is again an issue about windows zooming, seems like

Thank you, that works but now I'm trying to figure out how to make the UI update on the drawing

Hi, Given your image it's indeed very complicated to correctly count the number of cell. I made

Hi everybody, I'm using ICY/HK-Means/Active Contours to have access to multiple ROIs (nuclei)

Hello, Every time I take a screenshot of the image I want separated by channels 2 things happen.

Hi Mike, Sorry for the late reply, just back from vacations. I though Alexandre dispatched a patch in

Thanks it works.

Hello Livio, You could use ScriptEngineManager, is an entity that is defined inside of javax package.

Hello, Line ROI cannot do that as there are only intersection tool for intensity profile analysis.

Hi George, Thanks for providing an image so i can test. Indeed the image really require you to use

As a followup in case this is helpful to somebody else, I needed to convert my sequence to RGB before

Hi Kendra, Icy use Bio-Formats to open image (as PNG) so i think it's directly related to this

This new version is a major update with important changes concerning VTK, now you can see almost all

Hi Omer, Icy batch mode works with Protocol and currently there is no real solution to process big 3D

Dear Icy Forum, We have to analyze the behavior of animals in Open Field. For this purpose, we write

Do you have any other computer using the same Operating System (Ubuntu Voyager) ? Are they impacted

Hi Gonzalo, Sorry, but the access to your file seems to be restricted… Could you double check this?

Hi David, Thanks, that clarifies things a lot, and indeed that is something Icy (and the active