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Icy imaging
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MLB
,
Stephane
4
12/13/18
Q&A
Draw ellipsoide
Nice finding ! I wasn't aware this plugin was capable of that :) - Stephane Le jeudi 13 décembre
unread,
3D
volume
Q&A
Draw ellipsoide
Nice finding ! I wasn't aware this plugin was capable of that :) - Stephane Le jeudi 13 décembre
12/13/18
fangl...@berkeley.edu
,
Stephane
3
11/6/18
Q&A
Scripting: How to generate 3D VTK canvas without click mouse?
Hi Linda, Well done ! Indeed that is the method to use, the problem is that "canvas" are
unread,
3D
Canvas
VTK
script
Q&A
Scripting: How to generate 3D VTK canvas without click mouse?
Hi Linda, Well done ! Indeed that is the method to use, the problem is that "canvas" are
11/6/18
MLB
,
Stephane
3
8/16/17
Q&A
Rotate polyline on 3D Roi Tool
Hi MLB, There is no easy way to rotate a ROI currently, 2D Polyline is a Shape internally so you can
unread,
3D
ROI
Q&A
Rotate polyline on 3D Roi Tool
Hi MLB, There is no easy way to rotate a ROI currently, 2D Polyline is a Shape internally so you can
8/16/17
Julien Pontabry
,
Alexandre Dufour
3
4/3/17
Q&A
Long computation time for distance map from Mesh 3D ROI
Hi Alexandre, Thanks for the fix. I tried it on a few images and it seems to be a bit faster. However
unread,
3D
Convexify
Distance
ROI
computation
time
Q&A
Long computation time for distance map from Mesh 3D ROI
Hi Alexandre, Thanks for the fix. I tried it on a few images and it seems to be a bit faster. However
4/3/17
turtle...@googlemail.com
,
Stephane
2
11/22/16
Q&A
Problem creating 3D image
Hi Christin, It would help if you can give resolution information about your image. Sometime the
unread,
3D
VTK
Q&A
Problem creating 3D image
Hi Christin, It would help if you can give resolution information about your image. Sometime the
11/22/16
Tamlyn Peel
11/8/16
Q&A
3D Drift Correction
Hi Currently moving all my workflow to Icy so I can automate most of my analysis and reduce my
unread,
3D
feature-request
plugin
Q&A
3D Drift Correction
Hi Currently moving all my workflow to Icy so I can automate most of my analysis and reduce my
11/8/16
Timothy J Gallaher
,
Stephane
2
10/24/16
Q&A
3D segmentation protocol
Hi Tim, Did you tried to use IsoSurface plugin ? Or just doing segmentation (Threshold, HK-Means...
unread,
3D
Beginner
Segmentation
Q&A
3D segmentation protocol
Hi Tim, Did you tried to use IsoSurface plugin ? Or just doing segmentation (Threshold, HK-Means...
10/24/16
Théo Liu
,
Stephane
4
9/22/16
Q&A
3d vtk viewer
Glad it has fixed your problem :) Best, - Stephane Le jeudi 22 septembre 2016 15:35:39 UTC+2, Théo
unread,
3D
VTK
bug-report
Q&A
3d vtk viewer
Glad it has fixed your problem :) Best, - Stephane Le jeudi 22 septembre 2016 15:35:39 UTC+2, Théo
9/22/16
karol
,
Stephane
2
6/23/16
Q&A
Convert many pictures in 2D to 3D
Hi Karol, I'm not sure to understand what you mean. Taking 2D image from webcam then interpolate
unread,
3D
interpolate
picture
webcam
Q&A
Convert many pictures in 2D to 3D
Hi Karol, I'm not sure to understand what you mean. Taking 2D image from webcam then interpolate
6/23/16
Benjamin Cappe
,
Alexandre Dufour
3
10/21/17
Q&A
3D+t segmentation
Hi Alexandre, I know that this thread was open long time ago, but I tried analysis using 2D by other
unread,
3D
4D
analysis
cell
contours
protocols
time
tracking
Q&A
3D+t segmentation
Hi Alexandre, I know that this thread was open long time ago, but I tried analysis using 2D by other
10/21/17
Jingjing
6/7/16
Q&A
active contours 3D measurements
Dear Alexandre and Stephane, It might be a stupid question because computer never lies, but I'm
unread,
3D
ROI
contours
measurements
statistics
Q&A
active contours 3D measurements
Dear Alexandre and Stephane, It might be a stupid question because computer never lies, but I'm
6/7/16
Stephane
4/26/16
Announcement
Icy 1.8.0.0 released !
This new version is a major update with important changes concerning VTK, now you can see almost all
unread,
3D
Icy
ROI
VTK
Announcement
Icy 1.8.0.0 released !
This new version is a major update with important changes concerning VTK, now you can see almost all
4/26/16
Jingjing
,
Alexandre Dufour
4
4/24/16
Q&A
ROI Statistics 3D yaw angle and pitch angle
Dear Jingjing, The ellipsoid fitting is based on the least-squares algorithm available here: http://
unread,
3D
ROI
eclipse
measurements
statistics
Q&A
ROI Statistics 3D yaw angle and pitch angle
Dear Jingjing, The ellipsoid fitting is based on the least-squares algorithm available here: http://
4/24/16
Jingjing
,
Alexandre Dufour
3
4/6/16
Q&A
active contours being slow and crashes segmenting 3D image stacks
Dear Alexandre, Yes it works!! Many thanks for your quick reply - now it runs very fast and gives
unread,
3D
contours
slow
Q&A
active contours being slow and crashes segmenting 3D image stacks
Dear Alexandre, Yes it works!! Many thanks for your quick reply - now it runs very fast and gives
4/6/16
Bonora Massimo
,
Alexandre Dufour
4
3/3/16
Q&A
3D Deformation Profiler on Track Manager
Hi Massimo, Typically you can increase execution time by playing with the “contour sampling”, “
unread,
3D
Mac
export
track-manager
tracking
Q&A
3D Deformation Profiler on Track Manager
Hi Massimo, Typically you can increase execution time by playing with the “contour sampling”, “
3/3/16
Jeff Steimle
,
Stephane
2
2/11/16
Q&A
Basic Tutorial on Making 3D reconstructions from 2D histology
Hi Jeff, Did you try to just use the 3D VTK view in Icy to display Z-Stack as a volume ? I hope you
unread,
3D
tutorial
Q&A
Basic Tutorial on Making 3D reconstructions from 2D histology
Hi Jeff, Did you try to just use the 3D VTK view in Icy to display Z-Stack as a volume ? I hope you
2/11/16
Pau Formosa Jordan
,
Stephane
3
2/12/16
Q&A
3D VTK Viewer does not allow me to simultaneously visualize different channels...
Thanks Stephane for your response, you are right !! Now it works :-) Cheers, Pau El dimecres, 10
unread,
3D
VTK
bug-report
Q&A
3D VTK Viewer does not allow me to simultaneously visualize different channels...
Thanks Stephane for your response, you are right !! Now it works :-) Cheers, Pau El dimecres, 10
2/12/16
dnke...@oakland.edu
,
Alexandre Dufour
12
10/9/15
Q&A
Which 3D formats are supported?
Hi David, Thanks, that clarifies things a lot, and indeed that is something Icy (and the active
unread,
3D
Icy
ROI
contours
Q&A
Which 3D formats are supported?
Hi David, Thanks, that clarifies things a lot, and indeed that is something Icy (and the active
10/9/15
NicoPiC
,
Stephane
8
8/27/15
Q&A
3D Filaments
You're welcome ;) - Stephane Le jeudi 27 août 2015 16:14:54 UTC+2, NicoPiC a écrit : Thanks a lot
unread,
3D
filaments
measurements
Q&A
3D Filaments
You're welcome ;) - Stephane Le jeudi 27 août 2015 16:14:54 UTC+2, NicoPiC a écrit : Thanks a lot
8/27/15
Jingjing
8/7/15
Q&A
Active contours freezes my computer
Dear Developer, I was trying to segment a 3D image stack (156x156x100, 2MB) using the active contours
unread,
3D
contours
Q&A
Active contours freezes my computer
Dear Developer, I was trying to segment a 3D image stack (156x156x100, 2MB) using the active contours
8/7/15
Guillaume De Brito
, …
NicoPiC
4
8/19/15
Q&A
Draw 3D ROI
Hi everyone, I'm like Guillaume today we use the thresholder and then we use the active contour
unread,
3D
ROI
Q&A
Draw 3D ROI
Hi everyone, I'm like Guillaume today we use the thresholder and then we use the active contour
8/19/15
Yuan ZHOU
,
Stephane
3
7/10/15
Q&A
spot detector-how the surface and average intensity is calculated?
Thanks for your reply, Stephane. Lillian 在 2015年6月29日星期一 UTC+8下午4:44:27,Stephane写道: Hello Yuan,
unread,
3D
Spot
Q&A
spot detector-how the surface and average intensity is calculated?
Thanks for your reply, Stephane. Lillian 在 2015年6月29日星期一 UTC+8下午4:44:27,Stephane写道: Hello Yuan,
7/10/15
Guillaume De Brito
,
Stephane
4
6/3/15
Q&A
3D VTK crash on MacBook Pro
Sorry for not having any better solution currently. Of course if we find a solution for that we will
unread,
3D
Icy
VTK
Q&A
3D VTK crash on MacBook Pro
Sorry for not having any better solution currently. Of course if we find a solution for that we will
6/3/15
Rex Yang
,
thibault...@yahoo.fr
4
2/25/15
Q&A
Is it possible to convert 2D video into 3D?
Dear Rex, I have understood your problem but there is no such tools implemented in Icy. Your problem
unread,
3D
video
Q&A
Is it possible to convert 2D video into 3D?
Dear Rex, I have understood your problem but there is no such tools implemented in Icy. Your problem
2/25/15
Jan Swartjes
,
Stephane
2
11/14/14
Q&A
How to do 3D ROI
Hi Jan, Right now you need to initialize 3D ROI from plugin. For instance you can use the Thresholder
unread,
3D
ROI
Q&A
How to do 3D ROI
Hi Jan, Right now you need to initialize 3D ROI from plugin. For instance you can use the Thresholder
11/14/14
Annabelle
,
Fabrice de Chaumont
5
8/22/14
Q&A
3D geometry from 2D images, make a new image
Thank you very much the second instruction was the good one!! Best, Annabelle Le vendredi 22 août
unread,
3D
Q&A
3D geometry from 2D images, make a new image
Thank you very much the second instruction was the good one!! Best, Annabelle Le vendredi 22 août
8/22/14
Antoine Le Gall
,
Stephane
14
8/12/14
Q&A
Closing 3D window makes Icy crash
Yeah it is always tricky when we are not able to reproduce bug here, but already the freeze thing was
unread,
3D
crash
freeze
vizualization
Q&A
Closing 3D window makes Icy crash
Yeah it is always tricky when we are not able to reproduce bug here, but already the freeze thing was
8/12/14
louise-laure
,
Will Ouyang
8
8/4/14
Q&A
Moving multiple ROIs at the same time
Works great thanks! Le lundi 4 août 2014 13:04:50 UTC+2, Will Ouyang a écrit : Hi, You are welcome.
unread,
3D
ROI
Track
feature-request
protocols
Q&A
Moving multiple ROIs at the same time
Works great thanks! Le lundi 4 août 2014 13:04:50 UTC+2, Will Ouyang a écrit : Hi, You are welcome.
8/4/14
Maxine Lam
, …
Sylwia Krawczyk
9
11/13/14
Q&A
Saving 3D movie
Hi both, The same thing happens to me: I have nice 3D VTK view but when I press screen shot I only
unread,
3D
export
movie
Q&A
Saving 3D movie
Hi both, The same thing happens to me: I have nice 3D VTK view but when I press screen shot I only
11/13/14