Basic Tutorial on Making 3D reconstructions from 2D histology

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Jeff Steimle

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Feb 10, 2016, 9:25:03 AM2/10/16
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I have serial sections of organ histology (see image 26.jpg) that I am hoping to convert into 3D (Example 1.jpg). I have previously used tools like Amira to do this, but no longer have access to that software. Are there any resources or tutorials for new users to help them get started in Icy?

I would greatly appreciate any help.
Jeff

26.jpg
Example 1.jpg

Stephane

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Feb 11, 2016, 4:32:06 AM2/11/16
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Hi Jeff,

Did you try to just use the 3D VTK view in Icy to display Z-Stack as a volume ?
I hope you images are not too big as 3D volume view requires the whole Z-Stack to be loaded in a single array (which are limited to 2 Gpixel).

- Stephane
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