Code behind ROI -> Fill Operation -> Interior

[Tamlyn Peel]

Hi,

Really basic question - just unable to find the code behind the tab command Region of Interest -> Fill Operation -> Fill interior and/or the protocol block 'Fill Inner Sequence'. Could someone point me in the right direction / function to use? Googling the Icy site isn't getting the answer!

In Javascript I want to blank out a section of the sequence (identified manually by a tweaked ROI3DStackPolygon as a region of noise / second harmonics) before running HKmeans, as I get a different / better result if I do all this manually but am automating analysis. Any better ideas also welcome!

Cheers

Tamlyn

[Stephane]

Hi Tamlyn,

Here's the code you need, and indeed except by looking the implementation directly in Icy you can spent a bit of time finding it :

DataIteratorUtil.set(new SequenceDataIterator(sequence, roi), value);

This function takes a DataIterator as input and will set it with the given value.
Hope that helps :)

- Stephane

[Tamlyn Peel]

Great, thanks!