Stephane
Jan 11, 2013, 9:44:53 AM1/11/13
to icy-so...@googlegroups.com
We are proud to announce a new version of Icy ! Many many changes in this one, be sure to update to this version.
Here's the complete changes log :
Application :
* Added a general search bar :
- Search in plugins, protocols and kernel commands.
- You can add you own results to search engine with a plugin.
* New ROI panel :
- new Load / Save / Copy / Paste operations on ROI.
- can change size and position depending the ROI type.
- added subtraction boolean operation.
- added surface / volume information.
- added pixel intensity information.
* New shortcuts :
- 2/4/6/8 (keypad) : image displacement (Canvas2D).
- F2 : duplicate view
- F3 : global search
- F4 : internalize/externalize view
- Ctrl+F4 : close view
- Ctrl+O : open an image file
- 0 : disable view synchronization group
- 1 : enable/disable view synchronization group 1
- 2 : enable/disable view synchronization group 2
- 3 : enable/disable view synchronization group 3
- 4 : enable/disable view synchronization group 4
- Shift+1 : global view synchronization group 1
- Shift+2 : global view synchronization group 2
- Shift+3 : global view synchronization group 3
- Shift+4 : global view synchronization group 4
- Shift+0 : cancel global view synchronization
- Shift+G : grid tile viewers in grid
- Shift+H : horizontal tile viewers arrangement
- Shift+V : vertical tile viewers arrangement
* Reworked ROI control in Canvas2D.
* Fixed proxy setting which should work now on Linux system.
* Improved plugin installation / udpate process.
* Fixed IcyBufferedImage bicubic filtered scaling.
* Fixed the infamous ComboBox selection bug in Dialog on MAC OSX system.
* Improved native librairie loading.
* Better handling of incorrect save format.
* Screenshot action now generate RGB image (ARGB is not supported by JPG nor AVI).
* Fixed Canvas3D screenshot fearure.
* Added support to launch a plugin at startup from the command line.
* Added support to open an image from command line.
* Ctrl key is now used as mouse modifier on MAC OSX as Cmd key is
misinterpreted by JVM as right mouse button modifier.
* Better filename preservation in Sequence name.
* Improved histogram display.
* Added 'help' button in plugin manager to redirect on online plugin help.
* Fixed a bug in metadata pixelSize fields.
* Added new splash screens :)
* A lot of others minors fixes and improvements.
Developers :
* Added new methods in specific ROI classes :
- ROI2DEllipse.setEllipse(..)
- ROI2DRectangle.setRectangle(..)
* Added Point3D, Point4D and Point5D classes (same implementation as java.awt.geom.Point2D).
* Added Rectangle3D, Rectangle4D and Rectangle5D classes (same implementation as java.awt.geom.Rectangle2D).
* ROI :
- added getVolume() method (return volume in number of pixel).
- added getPerimeter() method (return perimeter in number of pixel).
- added getDimension() method (return number of dimension).
- introduced contains(..) method (method was initially located in ROI2D, ROI3D... classes).
- introduced intersect(..) method (method was initially located in ROI2D, ROI3D... classes).
* BooleanMask2D :
- added getPoints() method (return points composing the mask).
- added getComponents() method (return independent object mask).
- added getEdgePoints() method (return mask contour points).
- added getComponentsPoints() method (return points from each independent object).
* Centralized all kernels menu commands to actions :
- FileActions : all file commands.
- PreferencesActions : launch preferences panel commands.
- SequenceOperationActions : sequence manipulation commands.
- WindowActions : window arrangement / opening commands.
- GeneralActions : all others commands.
- RoiActions : ROI panel actions.
* Canvas2D :
- added void translate(...) method.
* Added Clipboard class for easy copy/paste operations in Icy.
* IcyAbstractAction :
- now supports background action execution (with progressbar)
- added GetRichToolTip() method to retrieve the action RichToolTip.
* IcyCommandxxxButton now support IcyAbstractAction.
* added AbstractSequenceModel class for easy SequenceModel implementation.
* added PluginSearchProvider interface : a plugin implementing this interface provides results for the global search bar.
* Removed NetworkConnectionListener to only keep InternetAccessListener.
* IcyFrame :
- added dispose() method to ensure frame close and release.
- added getVisibleRect() method.
* Added new methods to the SwimmingPool class so we can now manipulate objects depending their names.
* Added SwimmingObjectChooser component to select specific object type from the swimming pool.
* Changed default pixel size unit to µm and time interval to second (compatible with OME).
* Added convertToType methods can now rescale values on data bounds.
* Added XMLPreferences.getXMLNode() method to get XML node.
* Added WeakWindowFocusListener class.
* Added methods to LookAndFeelUtil.
* Changed IcyTextField event.
* Added PluginRichToolTip class.
Hope you will like it :)
Here's the complete changes log :
Application :
* Added a general search bar :
- Search in plugins, protocols and kernel commands.
- You can add you own results to search engine with a plugin.
* New ROI panel :
- new Load / Save / Copy / Paste operations on ROI.
- can change size and position depending the ROI type.
- added subtraction boolean operation.
- added surface / volume information.
- added pixel intensity information.
* New shortcuts :
- 2/4/6/8 (keypad) : image displacement (Canvas2D).
- F2 : duplicate view
- F3 : global search
- F4 : internalize/externalize view
- Ctrl+F4 : close view
- Ctrl+O : open an image file
- 0 : disable view synchronization group
- 1 : enable/disable view synchronization group 1
- 2 : enable/disable view synchronization group 2
- 3 : enable/disable view synchronization group 3
- 4 : enable/disable view synchronization group 4
- Shift+1 : global view synchronization group 1
- Shift+2 : global view synchronization group 2
- Shift+3 : global view synchronization group 3
- Shift+4 : global view synchronization group 4
- Shift+0 : cancel global view synchronization
- Shift+G : grid tile viewers in grid
- Shift+H : horizontal tile viewers arrangement
- Shift+V : vertical tile viewers arrangement
* Reworked ROI control in Canvas2D.
* Fixed proxy setting which should work now on Linux system.
* Improved plugin installation / udpate process.
* Fixed IcyBufferedImage bicubic filtered scaling.
* Fixed the infamous ComboBox selection bug in Dialog on MAC OSX system.
* Improved native librairie loading.
* Better handling of incorrect save format.
* Screenshot action now generate RGB image (ARGB is not supported by JPG nor AVI).
* Fixed Canvas3D screenshot fearure.
* Added support to launch a plugin at startup from the command line.
* Added support to open an image from command line.
* Ctrl key is now used as mouse modifier on MAC OSX as Cmd key is
misinterpreted by JVM as right mouse button modifier.
* Better filename preservation in Sequence name.
* Improved histogram display.
* Added 'help' button in plugin manager to redirect on online plugin help.
* Fixed a bug in metadata pixelSize fields.
* Added new splash screens :)
* A lot of others minors fixes and improvements.
Developers :
* Added new methods in specific ROI classes :
- ROI2DEllipse.setEllipse(..)
- ROI2DRectangle.setRectangle(..)
* Added Point3D, Point4D and Point5D classes (same implementation as java.awt.geom.Point2D).
* Added Rectangle3D, Rectangle4D and Rectangle5D classes (same implementation as java.awt.geom.Rectangle2D).
* ROI :
- added getVolume() method (return volume in number of pixel).
- added getPerimeter() method (return perimeter in number of pixel).
- added getDimension() method (return number of dimension).
- introduced contains(..) method (method was initially located in ROI2D, ROI3D... classes).
- introduced intersect(..) method (method was initially located in ROI2D, ROI3D... classes).
* BooleanMask2D :
- added getPoints() method (return points composing the mask).
- added getComponents() method (return independent object mask).
- added getEdgePoints() method (return mask contour points).
- added getComponentsPoints() method (return points from each independent object).
* Centralized all kernels menu commands to actions :
- FileActions : all file commands.
- PreferencesActions : launch preferences panel commands.
- SequenceOperationActions : sequence manipulation commands.
- WindowActions : window arrangement / opening commands.
- GeneralActions : all others commands.
- RoiActions : ROI panel actions.
* Canvas2D :
- added void translate(...) method.
* Added Clipboard class for easy copy/paste operations in Icy.
* IcyAbstractAction :
- now supports background action execution (with progressbar)
- added GetRichToolTip() method to retrieve the action RichToolTip.
* IcyCommandxxxButton now support IcyAbstractAction.
* added AbstractSequenceModel class for easy SequenceModel implementation.
* added PluginSearchProvider interface : a plugin implementing this interface provides results for the global search bar.
* Removed NetworkConnectionListener to only keep InternetAccessListener.
* IcyFrame :
- added dispose() method to ensure frame close and release.
- added getVisibleRect() method.
* Added new methods to the SwimmingPool class so we can now manipulate objects depending their names.
* Added SwimmingObjectChooser component to select specific object type from the swimming pool.
* Changed default pixel size unit to µm and time interval to second (compatible with OME).
* Added convertToType methods can now rescale values on data bounds.
* Added XMLPreferences.getXMLNode() method to get XML node.
* Added WeakWindowFocusListener class.
* Added methods to LookAndFeelUtil.
* Changed IcyTextField event.
* Added PluginRichToolTip class.
Hope you will like it :)
Sibah
Jan 15, 2013, 5:38:36 AM1/15/13
to icy-so...@googlegroups.com
Hi Stephane,
Thank you for this! Since the new version, I cannot start the software (only the first intro window come with the new image of the software), and when I try to open the software a second time, I receive a message saying: "ICY is already running in this computer! Do you want to start anyway?" If I click Yes or NO, nothing more happen. I tried yesterday and today (after computer reboot) and it is not working.
And when I check the version.xml file in the folder of the software, it doesn't mention the version 1.3.0.0.0, only the previous one, please see below the first 6 lines of this file:
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<root>
<elements>
<element>
<name>ICY Kernel</name>
<version>1.2.7.0</version>
<root>
<elements>
<element>
<name>ICY Kernel</name>
<version>1.2.7.0</version>
Could you please help me with this problem?
Thank you in advance,
Sibah
Stephane
Jan 15, 2013, 10:08:02 AM1/15/13
to
Hi Sibah,
Sorry for the troubles with the new version !
It looks like the update was not processed entirely as the "version.xml" is not up to date. I guess you got an error during the update process.
Can you show the content of your icy folder ? Ideally it would be nice to have ls / dir command details.
Here is a classic Icy 1.3.0.0 folder content with correct file size :
D:\Applications\ICY
Something you can do is to download a fresh copy of Icy and recopy your old plugins and workspace folders as your setting.xml file to the new icy installation folder so you don't lost any of your setting / installed plugins.
Thanks for reporting the problem !
- Stephane
Sorry for the troubles with the new version !
It looks like the update was not processed entirely as the "version.xml" is not up to date. I guess you got an error during the update process.
Can you show the content of your icy folder ? Ideally it would be nice to have ls / dir command details.
Here is a classic Icy 1.3.0.0 folder content with correct file size :
D:\Applications\ICY
11/01/2013 11:28 <REP> lib
02/01/2013 17:42 <REP> plugins
10/09/2012 16:10 <REP> icy.app
11/01/2013 11:28 <REP> ij
10/09/2012 16:10 <REP> workspace
11/01/2013 11:36 17 384 CHANGELOG.txt
11/01/2013 11:36 35 147 COPYING.txt
11/01/2013 11:34 30 720 icy.exe
11/01/2013 11:34 2 977 916 icy.jar
11/01/2013 11:34 21 icy.sh
11/01/2013 11:28 493 IJ_Prefs.txt
11/01/2013 11:36 4 README.txt
11/01/2013 11:36 5 019 050 resources.jar
15/01/2013 15:46 5 502 setting.xml
11/01/2013 11:25 139 132 updater.jar
11/01/2013 11:36 6 724 version.xml
D:\Applications\ICY\lib :
So this way i can see what files weren't correctly updated.10/09/2012 16:10 <REP> mac64
10/09/2012 16:10 <REP> win32
10/09/2012 16:10 <REP> win64
26/04/2012 17:43 1 194 003 arpack-combo.jar
11/01/2013 11:26 1 061 642 bio-formats.jar
03/02/2012 18:34 281 694 bsh.jar
26/04/2012 17:43 108 874 csparsej.jar
03/02/2012 18:34 71 644 customizer.jar
03/02/2012 18:34 200 669 ejml.jar
11/01/2013 11:27 596 865 flamingo.jar
03/02/2012 18:34 792 036 flanagan.jar
03/02/2012 18:39 132 202 irclib.jar
03/02/2012 18:34 2 931 615 j3dcore.jar
03/02/2012 18:34 1 672 747 j3dutils.jar
03/02/2012 18:34 258 160 jai_codec.jar
03/02/2012 18:34 1 900 631 jai_core.jar
03/02/2012 18:34 1 140 690 jai_imageio.jar
03/02/2012 18:34 32 775 Jama.jar
03/02/2012 18:34 1 436 592 javacl.jar
26/04/2012 17:43 665 248 javassist.jar
21/08/2012 16:00 57 541 jcl-core.jar
03/02/2012 18:34 309 293 jcommon.jar
03/02/2012 18:34 75 034 jeval.jar
03/02/2012 18:34 1 425 744 jfreechart.jar
03/02/2012 18:34 2 082 557 jmf.jar
26/04/2012 17:43 91 475 jplasma.jar
26/04/2012 17:43 805 363 jtransforms.jar
26/04/2012 17:43 232 354 junit.jar
03/02/2012 18:34 743 361 jxl.jar
11/01/2013 11:27 16 633 laf-plugin.jar
11/01/2013 11:27 392 579 laf-widget.jar
11/01/2013 11:25 100 818 loci-common.jar
06/05/2012 12:01 489 883 log4j.jar
03/02/2012 18:34 39 078 mediaplayer.jar
19/04/2012 21:01 571 123 MMAcqEngine.jar
19/04/2012 21:01 54 591 MMCoreJ.jar
19/04/2012 21:01 1 363 881 MMJ_.jar
03/02/2012 18:34 63 515 multiplayer.jar
26/04/2012 17:43 107 325 netlib-java.jar
11/01/2013 11:25 411 346 ome-xml.jar
26/04/2012 17:43 35 211 optimization.jar
26/04/2012 17:43 4 320 658 parallelcolt.jar
03/02/2012 18:34 110 076 phys2d.jar
11/01/2013 11:26 30 446 poi-excelant.jar
03/02/2012 18:34 910 348 poi-loci.jar
11/01/2013 11:26 4 802 621 poi-ooxml-schemas.jar
11/01/2013 11:26 936 648 poi-ooxml.jar
11/01/2013 11:27 1 226 511 poi-scratchpad.jar
11/01/2013 11:26 1 869 113 poi.jar
11/01/2013 11:26 912 976 scifio.jar
19/06/2012 16:11 324 367 simpleItk.jar
11/06/2012 15:40 26 176 slf4j-api.jar
11/06/2012 15:40 9 711 slf4j-log4j.jar
03/02/2012 18:34 294 070 sound.jar
11/01/2013 11:27 165 834 substance-flamingo.jar
11/01/2013 11:27 81 036 substance-swingx.jar
11/01/2013 11:27 1 517 459 substance.jar
11/01/2013 11:27 1 487 304 swingx-all.jar
03/02/2012 18:34 13 386 Tracking.jar
11/01/2013 11:27 109 087 trident.jar
03/02/2012 18:34 313 424 vecmath.jar
03/02/2012 18:34 3 115 233 vtk.jar
26/04/2012 17:43 40 318 152 xuggler.jar
60 file(s)
Something you can do is to download a fresh copy of Icy and recopy your old plugins and workspace folders as your setting.xml file to the new icy installation folder so you don't lost any of your setting / installed plugins.
Thanks for reporting the problem !
- Stephane
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