using ImageJ plugin inside rangeloop block for getting "per ROI" results

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krishna kanth chitta

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Dec 9, 2016, 4:35:59 AM12/9/16
to Icy imaging
Hi,

I am using "connected components" block inside "range loop" block to extract individual ROI's based on "value" from a labelled image.

I am using an imageJ plugin called "SpotCaliper" for each of the extracted ROI in the "range loop" block

Though  "call IJ" plugin works, it launches multiple instances of "SpotCaliper" as it is in the "rangeloop" and results in memory crash.

Please suggest ways of processing each ROI with imageJ plugin from a labelled image.
It would be great if I can mention more than one parameter for imageJ plugin through call IJ plugin.

Thank you

Krishna Kanth


Stephane

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Dec 13, 2016, 5:44:28 AM12/13/16
to Icy imaging
Hi Kristina,

Why don't you directly process the Labeled image with SpotCaliper so you get all results at same time instead of processing it with a range loop ?

Best,

- Stephane
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