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Aurélien Bailly
9/9/21
3D VTK displaying polygon lines and cut volumes in v2.2
Dear Icy lovers, since i've done the latest ICY update (2 platforms, independent java installs),
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3D VTK displaying polygon lines and cut volumes in v2.2
Dear Icy lovers, since i've done the latest ICY update (2 platforms, independent java installs),
9/9/21
Maria Hanna
5/27/21
3D help
Hello! Could anyone help me with 3D visualization of z stack in tiff format from confocal ZEISS? I
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3D help
Hello! Could anyone help me with 3D visualization of z stack in tiff format from confocal ZEISS? I
5/27/21
Gabrielle Budd
5/3/21
Null Pointer Exception error message.
I'm getting this error message when I try to import .czi files to Icy on my MacBook Pro. Any
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Null Pointer Exception error message.
I'm getting this error message when I try to import .czi files to Icy on my MacBook Pro. Any
5/3/21
Lorenz Fuchs
4/20/21
Quantify fluorescence.
Hi all, I would like to quantify GFP expression and compare it between different cells. I have been
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Quantify fluorescence.
Hi all, I would like to quantify GFP expression and compare it between different cells. I have been
4/20/21
YoungJun Bae
4/13/21
Error messenge in launching
When I turn on Icy, this error message comes up. ------------- Error while patching ImageJ classes:
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Error messenge in launching
When I turn on Icy, this error message comes up. ------------- Error while patching ImageJ classes:
4/13/21
Laura Shankman
3/30/21
ROI conversion into an ImageJ friendly format
The HK means segmentation algorithm is the best I've found for my Z-stacked images. I want to
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ROI conversion into an ImageJ friendly format
The HK means segmentation algorithm is the best I've found for my Z-stacked images. I want to
3/30/21
sophie besse
2/2/21
substraction of an image stack to another
Hi I would like to know if it is possible to substract 2 stacks of images, every stack being in a
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substraction of an image stack to another
Hi I would like to know if it is possible to substract 2 stacks of images, every stack being in a
2/2/21
masoud...@gmail.com
1/13/21
Icy Mult-Dimensional Acquisition Positions List window not internalised! May cause crash.
Dear Icy crew, The MDA positions list window is not an icy-internalised window, I have noticed that
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Icy Mult-Dimensional Acquisition Positions List window not internalised! May cause crash.
Dear Icy crew, The MDA positions list window is not an icy-internalised window, I have noticed that
1/13/21
François PIUMI
1/12/21
Icy install : java error
Hi, I just downloaded Icy, clicked on the "icy.exe' icon. and then got the following error
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Icy install : java error
Hi, I just downloaded Icy, clicked on the "icy.exe' icon. and then got the following error
1/12/21
masoud...@gmail.com
9/28/20
ActiveContours spilling out into non-image areas of sequence frame
Hey Icy community, Is there any way to prevent ActiveContours from doing as described in the subject
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ActiveContours spilling out into non-image areas of sequence frame
Hey Icy community, Is there any way to prevent ActiveContours from doing as described in the subject
9/28/20
Jeremy Cullen
,
Robert Smith
6
9/7/20
completely out of my depth here please help
Jeromy Cullen, A couple of things to note. Can you obtain these images in a continous video format,
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completely out of my depth here please help
Jeromy Cullen, A couple of things to note. Can you obtain these images in a continous video format,
9/7/20
Guillermo Villagómez
,
Rogério Gomes
2
8/4/20
Q&A
.exe file in ubuntu when clicking "Dowload for Linux" option
Ok, I am not an expert on Linux, but I think I can help. On the ICY folder there is a icy file (not
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Q&A
.exe file in ubuntu when clicking "Dowload for Linux" option
Ok, I am not an expert on Linux, but I think I can help. On the ICY folder there is a icy file (not
8/4/20
Sergio Hernández
4/24/20
Q&A
Roi Filter
Hi i´m tring to separate rois detected by spot detector but i can´t filter by area,it always give me
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Q&A
Roi Filter
Hi i´m tring to separate rois detected by spot detector but i can´t filter by area,it always give me
4/24/20
Cristian Malhue
3/17/20
Q&A
Spot Detector and Colocalization Studio
When I use spot detector this throws me a number of spots, then I activate the Colocalization Studio
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Q&A
Spot Detector and Colocalization Studio
When I use spot detector this throws me a number of spots, then I activate the Colocalization Studio
3/17/20
Angelica Esperanza Beltran Rodriguez
2/6/20
Q&A
Re: I can't download the Icy software.
I had the same problem, i think it was a problem with the page of Icy, but today i was able to
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Q&A
Re: I can't download the Icy software.
I had the same problem, i think it was a problem with the page of Icy, but today i was able to
2/6/20
Sergio Hernández
1/8/20
Q&A
XML files in protocols
Hi there is a way to save trackgroups as xml files in protocols?, im able to calculate speed with
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protocols
track-manager
tracking
Q&A
XML files in protocols
Hi there is a way to save trackgroups as xml files in protocols?, im able to calculate speed with
1/8/20
Magali SOYER
, …
Cláudia Almeida
11
8/6/19
Q&A
Colocalization over 3 channels
Hi There was no error message but block 16 never got GREEN. thanks Claudia On Monday, May 13, 2019 at
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colocalization
contours
multichannel
spot-detector
Q&A
Colocalization over 3 channels
Hi There was no error message but block 16 never got GREEN. thanks Claudia On Monday, May 13, 2019 at
8/6/19
Lockett, Stephen (NIH/NCI) [C]
, …
Stephane
11
7/4/19
more issues
Hi Stephen, Much larger than 2^31 pixels for X*Y dimension ?? As i was speaking specifically about
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more issues
Hi Stephen, Much larger than 2^31 pixels for X*Y dimension ?? As i was speaking specifically about
7/4/19
xavier heiligenstein
,
Stephane
3
7/2/19
Q&A
3D rotation view does not work
Hi Xavier, In fact the 3D rotation plugin uses screenshot feature to do the rendering, be careful of
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Q&A
3D rotation view does not work
Hi Xavier, In fact the 3D rotation plugin uses screenshot feature to do the rendering, be careful of
7/2/19
Lora Martucci
, …
Fabrice de Chaumont
9
4/24/19
Q&A
Issue detecting a white mouse on a bright background
Dear Fabrice, Thank you for your documentation. I already heard about it during a talk with T.
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Q&A
Issue detecting a white mouse on a bright background
Dear Fabrice, Thank you for your documentation. I already heard about it during a talk with T.
4/24/19
Georgios Pavlou
, …
Stephane
5
4/17/19
Q&A
Excel problem 256 columns
A big thanks Stephane! Super nice! On Friday, 12 April 2019 17:57:10 UTC+2, Stephane wrote: Hi
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Q&A
Excel problem 256 columns
A big thanks Stephane! Super nice! On Friday, 12 April 2019 17:57:10 UTC+2, Stephane wrote: Hi
4/17/19
Frédéric Marion-Poll
2
4/17/19
Q&A
error after installing eclipse - any cue?
Problem solved by installing Eclipse "Photon" instead of the last 2 releases. fred
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bug-report
eclipse
plugin
Q&A
error after installing eclipse - any cue?
Problem solved by installing Eclipse "Photon" instead of the last 2 releases. fred
4/17/19
Raaghavi Raghuraman
,
Stephane
2
4/12/19
Q&A
counting cell biomarkers and their intensities (4 markers)
Hi Raaghavi, You can do that really easily, just use the HK-Means plugin to find your cells, you will
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Icy
colocalization
count
detection
fluorescence
interpretation
multichannel
Q&A
counting cell biomarkers and their intensities (4 markers)
Hi Raaghavi, You can do that really easily, just use the HK-Means plugin to find your cells, you will
4/12/19
Maria Anastasina
, …
Mina F Abder
4
4/11/19
Q&A
Icy on Mac OS: problems launching Icy; errors after plugin installation
Hi Stephane, thanks very much for a quick solution, this solved the launching problem, and yes, I
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Q&A
Icy on Mac OS: problems launching Icy; errors after plugin installation
Hi Stephane, thanks very much for a quick solution, this solved the launching problem, and yes, I
4/11/19
clara velazquez
,
Stephane
6
4/11/19
Q&A
errors in exported excel file using spot detcetor
Hi Clara, Sorry for the late replay, I think i understand your problem now ! HK-Means automatically
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Q&A
errors in exported excel file using spot detcetor
Hi Clara, Sorry for the late replay, I think i understand your problem now ! HK-Means automatically
4/11/19
Gianluca Amoroso
4/10/19
Q&A
Measuring Lab values on ROIs
Hi all, I'm trying to measure Lab values (and possibly export that to Excel in some way) from
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Q&A
Measuring Lab values on ROIs
Hi all, I'm trying to measure Lab values (and possibly export that to Excel in some way) from
4/10/19
Georgios Pavlou
,
Stephane
3
4/9/19
Q&A
Tracking the edges of an object
Thank you Stephane. I wanted to track overtime separately the "maximum in distance" edges
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Q&A
Tracking the edges of an object
Thank you Stephane. I wanted to track overtime separately the "maximum in distance" edges
4/9/19
Rogério Gomes
,
Stephane
4
4/8/19
Q&A
Ubuntu 18.1
Hi Gomes, Glad you were able to solve your problem ! But if you can do that, just use the updater.jar
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Q&A
Ubuntu 18.1
Hi Gomes, Glad you were able to solve your problem ! But if you can do that, just use the updater.jar
4/8/19
Mina F Abder
, …
Thibault Lagache
4
4/5/19
Fwd: Question concerning colocalization analysis plugins
Dear Stephane and Thibault, I thank warmly both of you for your valuable inputs ! I've had
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Fwd: Question concerning colocalization analysis plugins
Dear Stephane and Thibault, I thank warmly both of you for your valuable inputs ! I've had
4/5/19
jkm...@gmail.com
,
Stephane
3
4/5/19
Q&A
Bio format error (file serie batch)
Hello ! Thanks for the answer, Attached are the protocols I used (V001 without batch processing). And
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batch
loop
protocols
spot-detector
Q&A
Bio format error (file serie batch)
Hello ! Thanks for the answer, Attached are the protocols I used (V001 without batch processing). And
4/5/19