You might want to restart PHP-FPM and clear your application cache if you make any changes there. Assuming you are installed on Ubuntu 14.04, run:
If you have followed our recommended installation instructions, then the home directory can be found in the CLI at /usr/share/nginx/atom.
Let us know what you find and how it goes - or if I have misunderstood your question.
Cheers,
--Claudio Escobar
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