I don't understand your problem.
If you indicate ibus property panel, ibus-setup can control the appearance.
Ubuntu 12.04 / Mint 13 has issues with ibus that affect the functionality of kmfl, which can be solved with a bit of tinkering.
- In short, stock ibus (version 1.4.1-3ubuntu1) has several difficulties when using the system tray icon GUI to enable or disable keyboards. Sometimes it is not turned on properly even though the icon changes, sometimes it says "no input window" when there is indeed one, and other times it simply seems unresponsive: turning on the keyboard does nothing. This seems across "almost all applications"
- Upstream versions of ibus from Debian Sid (version 1.4.1-7) solve all of these problems, and ibus seems to work very very well from the GUI menu with this update. I have packaged these versions and made them available in the main wasta-Linux ppa [1] Note that this new version will not show up in the Unity system tray (notification area) by default, however, so if you use Unity you will need to either run this command:
gsettings set desktop.unity.panel systray-whitelist "['all']"
- or do the same with dconf-editor.