IBAMR Developers

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IBAMR Developers

What Is IBAMR?

IBAMR is a distributed-memory parallel implementation of the immersed boundary (IB) method with support for Cartesian grid adaptive mesh refinement (AMR). IBAMR is available from the IBAMR GitHub page.

What Is the IB Method?

The immersed boundary (IB) method is a general-purpose numerical method for simulating fluid-structure interaction. For general information about the IB method, see http://math.nyu.edu/faculty/peskin. For visualizations of simulations that use IBAMR, see http://cims.nyu.edu/~griffith.

What Is the IBAMR Developers Google Group?

IBAMR Developers is a Google Group for discussing the continued development the IBAMR software infrastructure.

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Griffith, Boyce Eugene

Sep 27

Request for Letters of Support and IBAMR Publication Updates

IBAMR Users — We are preparing to submit several grant applications focused on enhancing IBAMR, and

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Request for Letters of Support and IBAMR Publication Updates

IBAMR Users — We are preparing to submit several grant applications focused on enhancing IBAMR, and

Sep 27

Andrea Giordano

May 17

IBAMR autotool: cannot find libmesh-config

Hi all, I am trying to configure IBAMR (autotool) on my Mac M1. During configuration, I get "

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IBAMR autotool: cannot find libmesh-config

Hi all, I am trying to configure IBAMR (autotool) on my Mac M1. During configuration, I get "

May 17

Walter Kou, Ron Yutkin2

Mar 7

strange error during regridding

Hi, Did you ever resolve this? If so, how? Thanks. On Tuesday, July 9, 2019 at 4:23:04 PM UTC+3

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strange error during regridding

Hi, Did you ever resolve this? If so, how? Thanks. On Tuesday, July 9, 2019 at 4:23:04 PM UTC+3

Mar 7

Feb 26

Annual solicitation for information on IBAMR-related research products

Hi IBAMR users + developers, We are working on writing up the annual report for the National Science

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Annual solicitation for information on IBAMR-related research products

Hi IBAMR users + developers, We are working on writing up the annual report for the National Science

Feb 26

Griffith, Boyce Eugene

1/3/23

Request for IBAMR usage information updates

Happy New Year, everyone! We would appreciate any updates regarding IBAMR usage information,

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Request for IBAMR usage information updates

Happy New Year, everyone! We would appreciate any updates regarding IBAMR usage information,

1/3/23

Athena Cai, Boyce Griffith2

3/1/22

Combustion multiphase flow simulation

On Feb 28, 2022, at 2:38 PM, Athena Cai <athen...@gmail.com> wrote: Hi all, I am looking to

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Combustion multiphase flow simulation

On Feb 28, 2022, at 2:38 PM, Athena Cai <athen...@gmail.com> wrote: Hi all, I am looking to

3/1/22

2/23/22

Can't detect the viz_IB2d folder in visit

Sorry, please ignore this. It's a silly mistake. Yiming On Wednesday, February 23, 2022 at 10:57:

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Can't detect the viz_IB2d folder in visit

Sorry, please ignore this. It's a silly mistake. Yiming On Wednesday, February 23, 2022 at 10:57:

2/23/22

Yiming Gan, Boyce Griffith14

2/22/22

Seeking examples of valveless pumping in a cylinderic tube

Thanks! This is awesome! I nailed it. Best, Yiming On Tuesday, February 22, 2022 at 11:43:36 AM UTC-5

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Seeking examples of valveless pumping in a cylinderic tube

Thanks! This is awesome! I nailed it. Best, Yiming On Tuesday, February 22, 2022 at 11:43:36 AM UTC-5

2/22/22

john thiels, Boyce Griffith2

2/17/22

Can I remove linux-debug in PETSC?

On Feb 17, 2022, at 11:34 AM, john thiels <jth...@gmail.com> wrote: Hi, My linux-debug folder

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Can I remove linux-debug in PETSC?

On Feb 17, 2022, at 11:34 AM, john thiels <jth...@gmail.com> wrote: Hi, My linux-debug folder

2/17/22

Yiming Gan, Boyce Griffith4

2/7/22

Having trouble configuring the MPI

On Feb 3, 2022, at 11:42 AM, Yiming Gan <germa...@gmail.com> wrote: It's in the

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Having trouble configuring the MPI

On Feb 3, 2022, at 11:42 AM, Yiming Gan <germa...@gmail.com> wrote: It's in the

2/7/22

Yiming Gan, Amneet Bhalla3

2/2/22

How to download and install SAMRAI

It works! Thanks a lot! Yiming On Friday, January 7, 2022 at 8:27:57 PM UTC-5 Amneet Bhalla wrote: It

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How to download and install SAMRAI

It works! Thanks a lot! Yiming On Friday, January 7, 2022 at 8:27:57 PM UTC-5 Amneet Bhalla wrote: It

2/2/22

Amneet Bhalla, … Boyce Griffith14

11/29/21

Attaching debugger via remote ssh

> On Nov 25, 2021, at 10:58 AM, Meraj Ahmed <meraja...@gmail.com> wrote: > > Dear

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Attaching debugger via remote ssh

> On Nov 25, 2021, at 10:58 AM, Meraj Ahmed <meraja...@gmail.com> wrote: > > Dear

11/29/21

Griffith, Boyce Eugene, Meraj Ahmed2

11/29/21

request for IBAMR usage information updates

I came across this software recently. I am still learning it. I don't know any colleague using

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request for IBAMR usage information updates

I came across this software recently. I am still learning it. I don't know any colleague using

11/29/21

X A, Boyce Griffith3

11/24/21

How exactly is the Center of Mass caculated in eel2d?

Thank you very much! Mike On Wednesday, 24 November 2021 at 00:26:16 UTC+8 Boyce wrote: On Nov 23,

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How exactly is the Center of Mass caculated in eel2d?

Thank you very much! Mike On Wednesday, 24 November 2021 at 00:26:16 UTC+8 Boyce wrote: On Nov 23,

11/24/21

Kaustubh Khedkar

8/6/21

GCC version for IBAMR

Hello everyone, What is the latest GCC version IBAMR is tested on? Thank you, Kaustubh Khedkar

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GCC version for IBAMR

Hello everyone, What is the latest GCC version IBAMR is tested on? Thank you, Kaustubh Khedkar

8/6/21

zeng...@umn.edu, Amneet Bhalla3

5/4/21

Do some post processing directly from generated samrai files in IBAMR?

Thanks, Prof. Amneet Bhalla and Ramakrishnan. This issue can be closed. On Friday, April 2, 2021 at

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Do some post processing directly from generated samrai files in IBAMR?

Thanks, Prof. Amneet Bhalla and Ramakrishnan. This issue can be closed. On Friday, April 2, 2021 at

5/4/21

zeng...@umn.edu, … Amneet Bhalla7

3/23/21

Different results between local laptop and the cluster using the exactly same codes

Thanks. Sorry for missing that. Let me re-run this example by myself. On Tue, Mar 23, 2021 at 8:04 PM

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Different results between local laptop and the cluster using the exactly same codes

Thanks. Sorry for missing that. Let me re-run this example by myself. On Tue, Mar 23, 2021 at 8:04 PM

3/23/21

zeng...@umn.edu, … Amneet Bhalla8

3/15/21

Compiling issue while adding a new class "SuperposeWaveGenerator"

Not really. They have different purpose. Also one is essential and the other is optional. On Mon, Mar

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Compiling issue while adding a new class "SuperposeWaveGenerator"

Not really. They have different purpose. Also one is essential and the other is optional. On Mon, Mar

3/15/21

Griffith, Boyce Eugene

12/2/20

semi-annual request for information on uses of IBAMR

Folks — We would appreciate any updates regarding your use of the IBAMR software. This information is

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semi-annual request for information on uses of IBAMR

Folks — We would appreciate any updates regarding your use of the IBAMR software. This information is

12/2/20

4/10/20

News on IBAMR based research

Hi Folks, IBAMR based research on wave energy conversion has been featured on the NSF XSEDE page.

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News on IBAMR based research

Hi Folks, IBAMR based research on wave energy conversion has been featured on the NSF XSEDE page.

4/10/20

王刚, Aaron Barrett3

1/27/20

Can this code work on Windows?

Thank you very much for your help Aaron Barrett <bar...@math.utah.edu>于2020年1月27日周一11:29写道：

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Can this code work on Windows?

Thank you very much for your help Aaron Barrett <bar...@math.utah.edu>于2020年1月27日周一11:29写道：

1/27/20

1/12/20

[SAMRAI] Problems when adding Runge-Kutta time integration to HyperbolicLevelIntegrator.

Dear IBAMR developers, I fix this problem by adding a simple line. copyTimeDependentData(level,

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[SAMRAI] Problems when adding Runge-Kutta time integration to HyperbolicLevelIntegrator.

Dear IBAMR developers, I fix this problem by adding a simple line. copyTimeDependentData(level,

1/12/20

1/2/20

Looking for a similar example

Hello everyone I am new to Immersive Boundary Method and using IBAMR. My application can be

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Looking for a similar example

Hello everyone I am new to Immersive Boundary Method and using IBAMR. My application can be

1/2/20

12/17/19

Tenure-track faculty positions at San Diego State University

Dear Colleagues, Apologies in advance if you are reading these job ads from multiple mailing lists.

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Tenure-track faculty positions at San Diego State University

Dear Colleagues, Apologies in advance if you are reading these job ads from multiple mailing lists.

12/17/19

Amneet Bhalla, Boyce Griffith2

9/24/19

Clang-format on Ubuntu

➜ clang-format --version clang-format version 8.0.0 (tags/google/stable/2019-01-18) On Sep 24, 2019,

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Clang-format on Ubuntu

➜ clang-format --version clang-format version 8.0.0 (tags/google/stable/2019-01-18) On Sep 24, 2019,

9/24/19

govind sharma, Boyce Griffith5

7/2/19

Fluid-Particle interaction

Thanks. Reynolds number can reach upto 500 such that there will be particulate turbulence flow. By

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Fluid-Particle interaction

Thanks. Reynolds number can reach upto 500 such that there will be particulate turbulence flow. By

7/2/19

Ramakrishnan Thirumalaisamy, … Amneet Bhalla19

5/20/19

Configuring IBAMR with sublime text 3 on Ubuntu 14.04 LTS

I agree naming it python4 is shooting in the foot :-/ (I think he had to use python3.7 to get these

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Configuring IBAMR with sublime text 3 on Ubuntu 14.04 LTS

I agree naming it python4 is shooting in the foot :-/ (I think he had to use python3.7 to get these

5/20/19

Alex Kaiser, Boyce Griffith3

4/25/19

nans, infs and random huge numbers in instrument readings, but flows look fine

I don't know. The error is inconsistent and I've only ever seen it on runs on lots of cores.

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nans, infs and random huge numbers in instrument readings, but flows look fine

I don't know. The error is inconsistent and I've only ever seen it on runs on lots of cores.

4/25/19

Boyce Griffith, vittoria flamini3

4/18/19

IBAMR with Sublime Text

On Apr 17, 2019, at 12:42 PM, vittoria flamini <vittoria...@gmail.com> wrote: Thank you

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IBAMR with Sublime Text

On Apr 17, 2019, at 12:42 PM, vittoria flamini <vittoria...@gmail.com> wrote: Thank you

4/18/19

3/26/19

IBAMR usage info

Folks — This is our semi-regular request for any information on publications, theses (PhD,

unread,

IBAMR usage info

Folks — This is our semi-regular request for any information on publications, theses (PhD,

3/26/19

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