[information-artifact-ontology] r718 committed - IAO release based on SVN revision 717

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Feb 23, 2015, 6:43:47 PM2/23/15

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Revision: 718
Author: zheng...@gmail.com
Date: Mon Feb 23 23:43:12 2015 UTC
Log: IAO release based on SVN revision 717
https://code.google.com/p/information-artifact-ontology/source/detail?r=718

Added:
/releases/2015-02-23
/releases/2015-02-23/iao.owl
/releases/2015-02-23/merged
/releases/2015-02-23/merged/iao_inferredSuperClasses.owl
/releases/2015-02-23/merged/iao_merged.owl
/releases/2015-02-23/merged/iao_merged_inferredSuper.owl
/releases/2015-02-23/ontology
/releases/2015-02-23/ontology/IAO.owl
/releases/2015-02-23/ontology/externalByHand.owl
/releases/2015-02-23/ontology/iao-main.owl
/releases/2015-02-23/ontology/import-OBO.owl
/releases/2015-02-23/ontology/obsolete.owl
/releases/2015-02-23/ontology/ontology-metadata.owl
/releases/2015-02-23/ontology-metadata.owl

=======================================
--- /dev/null
+++ /releases/2015-02-23/iao.owl Mon Feb 23 23:43:12 2015 UTC
@@ -0,0 +1,6330 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/iao.owl#"
+ xml:base="http://purl.obolibrary.org/obo/iao.owl"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:foaf="http://xmlns.com/foaf/0.1/"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+ xmlns:doap="http://usefulinc.com/ns/doap#">
+ <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/iao.owl">
+ <dc:date
rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2009-07-31</dc:date>
+ <owl:versionInfo
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2015-02-23</owl:versionInfo>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An information
artifact is, loosely, a dependent continuant or its bearer that is created
as the result of one or more intentional processes. Examples: uniprot, the
english language, the contents of this document or a printout of it, the
temperature measurements from a weather balloon. For more information, see
the project home page at
http://code.google.com/p/information-artifact-ontology/</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IDs allocated to
related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS:
IAO_0021000-IAO_0021999</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IDs allocated to
subdomains of IAO. pno.owl: IAO_0020000-IAO_0020999, d-acts.owl:
IAO_0021000-IAO_0021999</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This file is based
on checkout of our SVN repository revision $Revision: 717 $ </rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This is the first
release of IAO that uses BFO 2.0 class only
(http://purl.obolibrary.org/obo/bfo/2014-05-03/classes-only.owl) and RO
core relations
(http://purl.obolibrary.org/obo/ro/releases/2015-02-11/core.owl)
+ </rdfs:comment>
+ <protege:defaultLanguage
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">en</protege:defaultLanguage>
+ <dc:contributor xml:lang="en">Adam Goldstein</dc:contributor>
+ <dc:contributor xml:lang="en">Alan Ruttenberg</dc:contributor>
+ <dc:contributor xml:lang="en">Albert Goldfain</dc:contributor>
+ <dc:contributor xml:lang="en">Barry Smith</dc:contributor>
+ <dc:contributor xml:lang="en">Bjoern Peters</dc:contributor>
+ <dc:contributor xml:lang="en">Carlo Torniai</dc:contributor>
+ <dc:contributor xml:lang="en">Chris Mungall</dc:contributor>
+ <dc:contributor xml:lang="en">Chris Stoeckert</dc:contributor>
+ <dc:contributor xml:lang="en">Christian A.
Boelling</dc:contributor>
+ <dc:contributor xml:lang="en">Darren Natale</dc:contributor>
+ <dc:contributor xml:lang="en">David
Osumi-Sutherland</dc:contributor>
+ <dc:contributor xml:lang="en">Gwen Frishkoff</dc:contributor>
+ <dc:contributor xml:lang="en">Holger Stenzhorn</dc:contributor>
+ <dc:contributor xml:lang="en">James A. Overton</dc:contributor>
+ <dc:contributor xml:lang="en">James Malone</dc:contributor>
+ <dc:contributor xml:lang="en">Jennifer Fostel</dc:contributor>
+ <dc:contributor xml:lang="en">Jie Zheng</dc:contributor>
+ <dc:contributor xml:lang="en">Jonathan Rees</dc:contributor>
+ <dc:contributor xml:lang="en">Larisa Soldatova</dc:contributor>
+ <dc:contributor xml:lang="en">Lawrence Hunter</dc:contributor>
+ <dc:contributor xml:lang="en">Mathias Brochhausen</dc:contributor>
+ <dc:contributor xml:lang="en">Matt Brush</dc:contributor>
+ <dc:contributor xml:lang="en">Melanie Courtot</dc:contributor>
+ <dc:contributor xml:lang="en">Michel Dumontier</dc:contributor>
+ <dc:contributor xml:lang="en">Paolo Ciccarese</dc:contributor>
+ <dc:contributor xml:lang="en">Pat Hayes</dc:contributor>
+ <dc:contributor xml:lang="en">Philippe Rocca-Serra</dc:contributor>
+ <dc:contributor xml:lang="en">Randy Dipert</dc:contributor>
+ <dc:contributor xml:lang="en">Ron Rudnicki</dc:contributor>
+ <dc:contributor xml:lang="en">Satya Sahoo</dc:contributor>
+ <dc:contributor xml:lang="en">Sivaram Arabandi</dc:contributor>
+ <dc:contributor xml:lang="en">Werner Ceusters</dc:contributor>
+ <dc:contributor xml:lang="en">William Duncan</dc:contributor>
+ <dc:contributor xml:lang="en">William Hogan</dc:contributor>
+ <dc:contributor xml:lang="en">Yongqun (Oliver) He</dc:contributor>
+ <foaf:homepage
rdf:resource="http://code.google.com/p/information-artifact-ontology/"/>
+ <dc:license
rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
+ <owl:versionIRI
rdf:resource="http://purl.obolibrary.org/obo/iao/2015-02-23/iao.owl"/>
+ </owl:Ontology>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000179">
+ <rdfs:label xml:lang="en">BFO OWL specification label</rdfs:label>
+ <obo:IAO_0000232 xml:lang="en">Really of interest to developers
only</obo:IAO_0000232>
+ <obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology
to the name of the variable that is used to represent it in the code that
generates the BFO OWL file from the lispy specification.</obo:IAO_0000115>
+ <rdfs:subPropertyOf
rdf:resource="http://www.w3.org/2000/01/rdf-schema#label"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000180">
+ <rdfs:label xml:lang="en">BFO CLIF specification label</rdfs:label>
+ <obo:IAO_0000119>Person:Alan Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000232 xml:lang="en">Really of interest to developers
only</obo:IAO_0000232>
+ <obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology
to the term that is used to represent it in the the CLIF specification of
BFO2</obo:IAO_0000115>
+ <rdfs:subPropertyOf
rdf:resource="http://www.w3.org/2000/01/rdf-schema#label"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
+ <rdfs:label xml:lang="en">editor preferred label</rdfs:label>
+ <rdfs:label>editor preferred term</rdfs:label>
+ <rdfs:label xml:lang="en">editor preferred term</rdfs:label>
+ <obo:IAO_0000111>editor preferred term</obo:IAO_0000111>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The concise, meaningful, and
human-friendly name for a class or property preferred by the ontology
developers. (US-English)</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
label</obo:IAO_0000111>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
term</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
+ <rdfs:label xml:lang="en">example of usage</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A phrase describing how a class
name should be used. May also include other kinds of examples that
facilitate immediate understanding of a class semantics, such as widely
known prototypical subclasses or instances of the class. Although essential
for high level terms, examples for low level terms (e.g., Affymetrix HU133
array) are not</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">example</obo:IAO_0000111>
+ <obo:IAO_0000111 xml:lang="en">example of usage</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000113">
+ <rdfs:label xml:lang="en">in branch</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An annotation property indicating
which module the terms belong to. This is currently experimental and not
implemented yet.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">GROUP:OBI</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000277</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">in branch</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
+ <rdfs:label xml:lang="en">has curation status</rdfs:label>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has curation
status</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</rdfs:label>
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">textual
definition</rdfs:label>
+ <rdfs:label>definition</rdfs:label>
+ <rdfs:label xml:lang="en">definition</rdfs:label>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</obo:IAO_0000111>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">textual
definition</obo:IAO_0000111>
+ <obo:IAO_0000116 xml:lang="en">2012-04-05:
+Barry Smith
+
+The official OBI definition, explaining the meaning of a class or
property: 'Shall be Aristotelian, formalized and normalized. Can be
augmented with colloquial definitions' is terrible.
+
+Can you fix to something like:
+
+A statement of necessary and sufficient conditions explaining the meaning
of an expression referring to a class or property.
+
+Alan Ruttenberg
+
+Your proposed definition is a reasonable candidate, except that it is very
common that necessary and sufficient conditions are not given. Mostly they
are necessary, occasionally they are necessary and sufficient or just
sufficient. Often they use terms that are not themselves defined and so
they effectively can't be evaluated by those criteria.
+
+On the specifics of the proposed definition:
+
+We don't have definitions of 'meaning' or
'expression' or 'property'. For 'reference'
in the intended sense I think we use the term 'denotation'. For
'expression', I think we you mean symbol, or identifier. For
'meaning' it differs for class and property. For class we want
documentation that let's the intended reader determine whether an
entity is instance of the class, or not. For property we want documentation
that let's the intended reader determine, given a pair of potential
relata, whether the assertion that the relation holds is true. The
'intended reader' part suggests that we also specify who, we
expect, would be able to understand the definition, and also generalizes
over human and computer reader to include textual and logical definition.
+
+Personally, I am more comfortable weakening definition to documentation,
with instructions as to what is desirable.
+
+We also have the outstanding issue of how to aim different definitions to
different audiences. A clinical audience reading chebi wants a different
sort of definition documentation/definition from a chemistry trained
audience, and similarly there is a need for a definition that is adequate
for an ontologist to work with. </obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">The official definition, explaining
the meaning of a class or property. Shall be Aristotelian, formalized and
normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
+ <obo:IAO_0000111>definition</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The official OBI definition,
explaining the meaning of a class or property. Shall be Aristotelian,
formalized and normalized. Can be augmented with colloquial
definitions.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
+ <rdfs:label xml:lang="en">editor note</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An administrative note intended for
its editor. It may not be included in the publication version of the
ontology, so it should contain nothing necessary for end users to
understand the ontology.</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
+ <rdfs:label xml:lang="en">term editor</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term
editor and definition modified accordingly. See
http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">Name of editor entering the term in
the file. The term editor is a point of contact for information regarding
the term. The term editor may be, but is not always, the author of the
definition, which may have been worked upon by several
people</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
+ <rdfs:label xml:lang="en">alternative term</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An alternative name for a class or
property which means the same thing as the preferred name (semantically
equivalent)</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
+ <rdfs:label xml:lang="en">definition source</rdfs:label>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Discussion on
obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
+ <obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in
external database to indicate / attribute source(s) for the definition.
Free text indicate / attribute source(s) for the definition. EXAMPLE:
Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on
31.01.2007</obo:IAO_0000115>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000231">
+ <rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Relates an annotation property to
an obsolescence reason. The values of obsolescence reasons come from a list
of predefined terms, instances of the class obsolescence reason
specification.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">has obsolescence
reason</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
+ <rdfs:label xml:lang="en">curator note</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An administrative note of use for a
curator but of no use for a user</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000411">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">is denotator
type</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In OWL 2 add
AnnotationPropertyRange('is denotator type' 'denotator
type')</obo:IAO_0000116>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relates an class
defined in an ontology, to the type of it's denotator</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">is denotator type</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
+ <rdfs:label xml:lang="en">imported from</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">For external terms/classes, the
ontology from which the term was imported</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000424">
+ <rdfs:label xml:lang="en">expand expression to</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chris
Mungall</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an
object property (or possibly a data property) which can be used by a
macro-expansion engine to generate more complex expressions from simpler
ones</obo:IAO_0000115>
+ <obo:IAO_0000112 xml:lang="en">ObjectProperty: RO_0002104
+Label: has plasma membrane part
+Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051
some (http://purl.org/obo/owl/GO#GO_0005886 and
http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
+</obo:IAO_0000112>
+ <obo:IAO_0000111 xml:lang="en">expand expression
to</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000425">
+ <rdfs:label xml:lang="en">expand assertion to</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an
annotation property which can be expanded into a more detailed
axiom.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
+ <obo:IAO_0000112 xml:lang="en">ObjectProperty: RO???
+Label: spatially disjoint from
+Annotations: expand_assertion_to "DisjointClasses:
(http://purl.obolibrary.org/obo/BFO_0000051 some ?X)
(http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
+</obo:IAO_0000112>
+ <obo:IAO_0000111 xml:lang="en">expand assertion
to</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000426">
+ <rdfs:label xml:lang="en">first order logic expression</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">first order logic
expression</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000427">
+ <rdfs:label xml:lang="en">antisymmetric property</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">antisymmetric
property</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">part_of antisymmetric property
xsd:true</obo:IAO_0000112>
+ <obo:IAO_0000115 xml:lang="en">use boolean value xsd:true to
indicate that the property is an antisymmetric property</obo:IAO_0000115>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000589">
+ <rdfs:label xml:lang="en">OBO foundry unique label</rdfs:label>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The intended usage
of that property is as follow: OBO foundry unique labels are automatically
generated based on regular expressions provided by each ontology, so that
SO could specify unique label = 'sequence ' + [label], etc. , MA
could specify 'mouse + [label]' etc. Upon importing terms,
ontology developers can choose to use the 'OBO foundry unique
label' for an imported term or not. The same applies to
tools .</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">An alternative name for a class or
property which is unique across the OBO Foundry.</obo:IAO_0000115>
+ <obo:IAO_0000119 xml:lang="en">GROUP:OBO Foundry
<http://obofoundry.org/></obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">OBO foundry unique
label</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Chris
Mungall</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000596">
+ <rdfs:label xml:lang="en">has ID digit count</rdfs:label>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115>Relates an ontology used to record id policy to
the number of digits in the URI. The URI is: the 'has ID prefix"
annotation property value concatenated with an integer in the id range
(left padded with "0"s to make this many digits)</obo:IAO_0000115>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000597">
+ <rdfs:label xml:lang="en">has ID range allocated to</rdfs:label>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115>Relates a datatype that encodes a range of
integers to the name of the person or organization who can use those ids
constructed in that range to define new terms</obo:IAO_0000115>
+ <obo:IAO_0000112>Datatype: idrange:1
+Annotations: 'has ID range allocated to': "Chris
Mungall"
+EquivalentTo: xsd:integer[> 2151 , <= 2300]
+</obo:IAO_0000112>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000598">
+ <rdfs:label>has ID policy for</rdfs:label>
+ <obo:IAO_0000115>Relating an ontology used to record id policy to
the ontology namespace whose policy it manages</obo:IAO_0000115>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000599">
+ <rdfs:label xml:lang="en">has ID prefix</rdfs:label>
+ <obo:IAO_0000115>Relates an ontology used to record id policy to a
prefix concatenated with an integer in the id range (left padded with
"0"s to make this many digits) to construct an ID for a term
being created.</obo:IAO_0000115>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000600">
+ <rdfs:label xml:lang="en">elucidation</rdfs:label>
+ <obo:IAO_0000119 xml:lang="en">Person:Barry Smith</obo:IAO_0000119>
+ <obo:IAO_0000600 xml:lang="en">Primitive terms in a highest-level
ontology such as BFO are terms which are so basic to our understanding of
reality that there is no way of defining them in a non-circular fashion.
For these, therefore, we can provide only elucidations, supplemented by
examples and by axioms</obo:IAO_0000600>
+ <obo:IAO_0000111 xml:lang="en">elucidation</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000601">
+ <rdfs:label xml:lang="en">has associated axiom(nl)</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">An axiom associated with a term
expressed using natural language</obo:IAO_0000600>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has associated
axiom(nl)</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000602">
+ <rdfs:label xml:lang="en">has associated axiom(fol)</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">An axiom expressed in first order
logic using CLIF syntax</obo:IAO_0000600>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">has associated
axiom(fol)</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000603">
+ <rdfs:label xml:lang="en">is allocated id range</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Add as annotation triples in the
granting ontology</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Relates an ontology IRI to an
(inclusive) range of IRIs in an OBO name space. The range is give as, e.g.
"IAO_0020000-IAO_0020999"</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">is allocated id
range</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000604">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">retired from use as
of</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In OWL 2 add
AnnotationPropertyRange xsd:dateTimeStamp</obo:IAO_0000116>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relates a class of
CRID to the date after which further instances should not be made,
according to the central authority</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">retired from use as
of</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0010000">
+ <rdfs:label xml:lang="en">has axiom label</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">A URI that is intended to be unique
label for an axiom used for tracking change to the ontology. For an axiom
expressed in different languages, each expression is given the same
URI</obo:IAO_0000600>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has axiom id</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
+ <rdfs:label xml:lang="en">term replaced by</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Add as annotation triples in the
granting ontology</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the
term to another term that can be used as a substitute</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">term replaced by</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/RO_0001900">
+ <rdfs:label xml:lang="en">temporal interpretation</rdfs:label>
+ <foaf:page
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://code.google.com/p/obo-relations/wiki/ROAndTime</foaf:page>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/contributor">
+ <rdfs:label xml:lang="en-us">Contributor</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An entity responsible for making
contributions to the
+ content of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Examples of a Contributor include
a person, an
+ organisation, or a service. Typically, the name of a
+ Contributor should be used to indicate the
entity.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/coverage">
+ <rdfs:label xml:lang="en-us">Coverage</rdfs:label>
+ <dc:description xml:lang="en-us">Coverage will typically include
spatial location (a place name
+ or geographic coordinates), temporal period (a period label,
+ date, or date range) or jurisdiction (such as a named
+ administrative entity).
+ Recommended best practice is to select a value from a
+ controlled vocabulary (for example, the Thesaurus of Geographic
+ Names [TGN]) and that, where appropriate, named places or time
+ periods be used in preference to numeric identifiers such as
+ sets of coordinates or date ranges.</dc:description>
+ <rdfs:comment xml:lang="en-us">The extent or scope of the content
of the resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/creator">
+ <rdfs:label xml:lang="en-us">Creator</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An entity primarily responsible for
making the content
+ of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Examples of a Creator include a
person, an organisation,
+ or a service. Typically, the name of a Creator should
+ be used to indicate the entity.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/date">
+ <rdfs:label xml:lang="en-us">Date</rdfs:label>
+ <rdfs:comment xml:lang="en-us">A date associated with an event in
the life cycle of the
+ resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Typically, Date will be
associated with the creation or
+ availability of the resource. Recommended best practice
+ for encoding the date value is defined in a profile of
+ ISO 8601 [W3CDTF] and follows the YYYY-MM-DD
format.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/description">
+ <rdfs:label xml:lang="en-us">Description</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An account of the content of the
resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Description may include but is
not limited to: an abstract,
+ table of contents, reference to a graphical representation
+ of content or a free-text account of the content.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/format">
+ <rdfs:label xml:lang="en-us">Format</rdfs:label>
+ <rdfs:comment xml:lang="en-us">The physical or digital
manifestation of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Typically, Format may include the
media-type or dimensions of
+ the resource. Format may be used to determine the software,
+ hardware or other equipment needed to display or operate the
+ resource. Examples of dimensions include size and duration.
+ Recommended best practice is to select a value from a
+ controlled vocabulary (for example, the list of Internet Media
+ Types [MIME] defining computer media formats).</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/identifier">
+ <rdfs:label xml:lang="en-us">Resource Identifier</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An unambiguous reference to the
resource within a given context.</rdfs:comment>
+ <dc:description xml:lang="en-us">Recommended best practice is to
identify the resource by means
+ of a string or number conforming to a formal identification
+ system.
+ Example formal identification systems include the Uniform
+ Resource Identifier (URI) (including the Uniform Resource
+ Locator (URL)), the Digital Object Identifier (DOI) and the
+ International Standard Book Number (ISBN).</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/language">
+ <rdfs:label xml:lang="en-us">Language</rdfs:label>
+ <rdfs:comment xml:lang="en-us">A language of the intellectual
content of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Recommended best practice is to
use RFC 3066 [RFC3066],
+ which, in conjunction with ISO 639 [ISO639], defines two-
+ and three-letter primary language tags with optional
+ subtags. Examples include "en" or "eng" for
English,
+ "akk" for Akkadian, and "en-GB" for English
used in the
+ United Kingdom.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/member"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/publisher">
+ <rdfs:label xml:lang="en-us">Publisher</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An entity responsible for making
the resource available</rdfs:comment>
+ <dc:description xml:lang="en-us">Examples of a Publisher include a
person, an organisation,
+ or a service.
+ Typically, the name of a Publisher should be used to
+ indicate the entity.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/relation">
+ <rdfs:label xml:lang="en-us">Relation</rdfs:label>
+ <dc:description xml:lang="en-us">
+ Recommended best practice is to reference the resource by means
+ of a string or number conforming to a formal identification
+ system.
+ </dc:description>
+ <rdfs:comment xml:lang="en-us">A reference to a related
resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/rights">
+ <rdfs:label xml:lang="en-us">Rights Management</rdfs:label>
+ <dc:description xml:lang="en-us">
+ Typically, a Rights element will contain a rights
+ management statement for the resource, or reference
+ a service providing such information. Rights information
+ often encompasses Intellectual Property Rights (IPR),
+ Copyright, and various Property Rights.
+ If the Rights element is absent, no assumptions can be made
+ about the status of these and other rights with respect to
+ the resource.
+ </dc:description>
+ <rdfs:comment xml:lang="en-us">Information about rights held in
and over the resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/source">
+ <rdfs:label xml:lang="en-us">Source</rdfs:label>
+ <rdfs:comment xml:lang="en-us">A reference to a resource from
which the present resource
+ is derived.</rdfs:comment>
+ <dc:description xml:lang="en-us">The present resource may be
derived from the Source resource
+ in whole or in part. Recommended best practice is to reference
+ the resource by means of a string or number conforming to a
+ formal identification system.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/subject">
+ <rdfs:label xml:lang="en-us">Subject and Keywords</rdfs:label>
+ <rdfs:comment xml:lang="en-us">The topic of the content of the
resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Typically, a Subject will be
expressed as keywords,
+ key phrases or classification codes that describe a topic
+ of the resource. Recommended best practice is to select
+ a value from a controlled vocabulary or formal
+ classification scheme.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/title">
+ <rdfs:label xml:lang="en-us">Title</rdfs:label>
+ <dc:description xml:lang="en-us">
+ Typically, a Title will be a name by which the resource is
+ formally known.
+ </dc:description>
+ <rdfs:comment xml:lang="en-us">A name given to the
resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/type">
+ <rdfs:label xml:lang="en-us">Resource Type</rdfs:label>
+ <rdfs:comment xml:lang="en-us">The nature or genre of the content
of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Type includes terms describing
general categories, functions,
+ genres, or aggregation levels for content. Recommended best
+ practice is to select a value from a controlled vocabulary
+ (for example, the DCMI Type Vocabulary [DCMITYPE]). To
+ describe the physical or digital manifestation of the
+ resource, use the Format element.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">shorthand</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#isDefinedBy"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2002/07/owl#versionInfo"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://xmlns.com/foaf/0.1/homepage"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/page"/>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
+ <rdfs:label xml:lang="en">part of</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">Everything is part of itself. Any
part of any part of a thing is itself part of that thing. Two distinct
things cannot be part of each other.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Occurrents are not subject to
change and so parthood between occurrents holds for all the times that the
part exists. Many continuants are subject to change, so parthood between
continuants will only hold at certain times, but this is difficult to
specify in OWL. See
https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Parthood requires the part and the
whole to have compatible classes: only an occurrent can be part of an
occurrent; only a process can be part of a process; only a continuant can
be part of a continuant; only an independent continuant can be part of an
independent continuant; only an immaterial entity can be part of an
immaterial entity; only a specifically dependent continuant can be part of
a specifically dependent continuant; only a generically dependent
continuant can be part of a generically dependent continuant. (This list is
not exhaustive.)
+
+A continuant cannot be part of an occurrent: use 'participates
in'. An occurrent cannot be part of a continuant: use 'has
participant'. A material entity cannot be part of an immaterial
entity: use 'has location'. A specifically dependent continuant
cannot be part of an independent continuant: use 'inheres in'. An
independent continuant cannot be part of a specifically dependent
continuant: use 'bearer of'.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">a core relation that holds between
a part and its whole</obo:IAO_0000115>
+
<rdfs:seeAlso>http://www.obofoundry.org/ro/#OBO_REL:part_of</rdfs:seeAlso>
+ <obo:IAO_0000111 xml:lang="en">is part of</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">my brain is part of my body
(continuant parthood, two material entities)</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">my stomach cavity is part of my
stomach (continuant parthood, immaterial entity is part of material
entity)</obo:IAO_0000112>
+ <obo:IAO_0000118 xml:lang="en">part_of</obo:IAO_0000118>
+ <obo:IAO_0000112 xml:lang="en">this day is part of this year
(occurrent parthood)</obo:IAO_0000112>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
+ <obo:RO_0001900
rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
+ <rdfs:label xml:lang="en">has part</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">Everything has itself as a part.
Any part of any part of a thing is itself part of that thing. Two distinct
things cannot have each other as a part.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Occurrents are not subject to
change and so parthood between occurrents holds for all the times that the
part exists. Many continuants are subject to change, so parthood between
continuants will only hold at certain times, but this is difficult to
specify in OWL. See
https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Parthood requires the part and the
whole to have compatible classes: only an occurrent have an occurrent as
part; only a process can have a process as part; only a continuant can have
a continuant as part; only an independent continuant can have an
independent continuant as part; only a specifically dependent continuant
can have a specifically dependent continuant as part; only a generically
dependent continuant can have a generically dependent continuant as part.
(This list is not exhaustive.)
+
+A continuant cannot have an occurrent as part: use 'participates
in'. An occurrent cannot have a continuant as part: use 'has
participant'. An immaterial entity cannot have a material entity as
part: use 'location of'. An independent continuant cannot have a
specifically dependent continuant as part: use 'bearer of'. A
specifically dependent continuant cannot have an independent continuant as
part: use 'inheres in'.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">a core relation that holds between
a whole and its part</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">has part</obo:IAO_0000111>
+ <obo:IAO_0000118 xml:lang="en">has_part</obo:IAO_0000118>
+ <obo:IAO_0000112 xml:lang="en">my body has part my brain
(continuant parthood, two material entities)</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">my stomach has part my stomach
cavity (continuant parthood, material entity has part immaterial
entity)</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this year has part this day
(occurrent parthood)</obo:IAO_0000112>
+ <obo:RO_0001900
rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000054">
+ <rdfs:label xml:lang="en">realized in</rdfs:label>
+ <rdfs:comment>Paraphrase of elucidation: a relation between a
realizable entity and a process, where there is some material entity that
is bearer of the realizable entity and participates in the process, and the
realizable entity comes to be realized in the course of the
process</rdfs:comment>
+ <obo:IAO_0000600 xml:lang="en">[copied from inverse property
'realizes'] to say that b realizes c at t is to assert that there
is some material entity d & b is a process which has participant d at t
& c is a disposition or role of which d is bearer_of at t& the type
instantiated by b is correlated with the type instantiated by c. (axiom
label in BFO2 Reference: [059-003])</obo:IAO_0000600>
+ <obo:IAO_0000118 xml:lang="en">is realized by</obo:IAO_0000118>
+ <obo:IAO_0000111 xml:lang="en">realized in</obo:IAO_0000111>
+ <obo:IAO_0000118 xml:lang="en">realized_in</obo:IAO_0000118>
+ <obo:IAO_0000112 xml:lang="en">this disease is realized in this
disease course</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this fragility is realized in this
shattering</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this investigator role is realized
in this investigation</obo:IAO_0000112>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000055">
+ <rdfs:label xml:lang="en">realizes</rdfs:label>
+ <rdfs:comment>Paraphrase of elucidation: a relation between a
process and a realizable entity, where there is some material entity that
is bearer of the realizable entity and participates in the process, and the
realizable entity comes to be realized in the course of the
process</rdfs:comment>
+ <obo:IAO_0000111 xml:lang="en">realizes</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">this disease course realizes this
disease</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this investigation realizes this
investigator role</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this shattering realizes this
fragility</obo:IAO_0000112>
+ <obo:IAO_0000600 xml:lang="en">to say that b realizes c at t is to
assert that there is some material entity d & b is a process which has
participant d at t & c is a disposition or role of which d is bearer_of
at t& the type instantiated by b is correlated with the type
instantiated by c. (axiom label in BFO2 Reference:
[059-003])</obo:IAO_0000600>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000066">
+ <rdfs:label xml:lang="en">occurs in</rdfs:label>
+ <rdfs:comment>Paraphrase of definition: a relation between a
process and an independent continuant, in which the process takes place
entirely within the independent continuant</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">b occurs_in c =def b is a process
and c is a material entity or immaterial entity& there exists a
spatiotemporal region r and b occupies_spatiotemporal_region r.&
forall(t) if b exists_at t then c exists_at t & there exist spatial
regions s and s’ where & b spatially_projects_onto s at t& c is
occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at
t</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">occurs in</obo:IAO_0000111>
+ <obo:IAO_0000118 xml:lang="en">occurs_in</obo:IAO_0000118>
+ <obo:IAO_0000118 xml:lang="en">unfolds in</obo:IAO_0000118>
+ <obo:IAO_0000118 xml:lang="en">unfolds_in</obo:IAO_0000118>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000067"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
+ <owl:propertyChainAxiom rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
+ </owl:propertyChainAxiom>
+ <owl:propertyChainAxiom rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ </owl:propertyChainAxiom>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000067">
+ <rdfs:label xml:lang="en">contains process</rdfs:label>
+ <rdfs:comment>Paraphrase of definition: a relation between an
independent continuant and a process, in which the process takes place
entirely within the independent continuant</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">[copied from inverse property
'occurs in'] b occurs_in c =def b is a process and c is a
material entity or immaterial entity& there exists a spatiotemporal
region r and b occupies_spatiotemporal_region r.& forall(t) if b
exists_at t then c exists_at t & there exist spatial regions s and s’
where & b spatially_projects_onto s at t& c is
occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at
t</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">site of</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000039">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
+ <rdfs:label xml:lang="en">has measurement unit label</rdfs:label>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000135">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_specifically
denotes</rdfs:label>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">8/6/2009 Alan
Ruttenberg: The suggestions is to deprecate specific and generically
denotes in favor of a single denote relationship that corresponds to the
generic sense</obo:IAO_0000116>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Smith, Ceusters,
Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
+ <obo:IAO_0000112
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The process of
creation is, for example, writing down on paper the name of a friend by
deliberately creating a certain pattern using ink.
+
+Here the ink + paper is the independent continuant and the carrier is the
pattern in the ink.
+
+c = pattern in the ink
+b = paper + ink
+r = friend</obo:IAO_0000112>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">c specifically
denotes r =def
+r is a portion of reality
+& c is a particular quality
+& c depends specifically on some independent continuant b
+& b acquired c as the result of the achievement of an objective to
enable pointing to r repeatedly.
+
+Marked means there is a changed or additional quality of the bearer - the
quality is the information carrier.
+
+Case 1
***The diff for this file has been truncated for email.***
=======================================
--- /dev/null
+++ /releases/2015-02-23/merged/iao_inferredSuperClasses.owl Mon Feb 23
23:43:12 2015 UTC
@@ -0,0 +1,77 @@
+<?xml version="1.0"?>
+<rdf:RDF
xmlns="http://purl.obolibrary.org/obo/iao/iao_inferredSuperClasses.owl#"
+
xml:base="http://purl.obolibrary.org/obo/iao/iao_inferredSuperClasses.owl"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/iao/iao_inferredSuperClasses.owl"/>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000001">
+ <rdfs:subClassOf
rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000019"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000015">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000178">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000186">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000178"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass">
+ <rdfs:subClassOf
rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
+ </owl:Class>
+</rdf:RDF>
+
+
+
+
+
=======================================
--- /dev/null
+++ /releases/2015-02-23/merged/iao_merged.owl Mon Feb 23 23:43:12 2015 UTC
@@ -0,0 +1,6138 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/iao_merged.owl#"
+ xml:base="http://purl.obolibrary.org/obo/iao_merged.owl"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:foaf="http://xmlns.com/foaf/0.1/"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/iao_merged.owl">
+ <dc:date
rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2009-07-31</dc:date>
+ <owl:versionInfo
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2015-02-23</owl:versionInfo>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An information
artifact is, loosely, a dependent continuant or its bearer that is created
as the result of one or more intentional processes. Examples: uniprot, the
english language, the contents of this document or a printout of it, the
temperature measurements from a weather balloon. For more information, see
the project home page at
http://code.google.com/p/information-artifact-ontology/</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IDs allocated to
related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS:
IAO_0021000-IAO_0021999</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IDs allocated to
subdomains of IAO. pno.owl: IAO_0020000-IAO_0020999, d-acts.owl:
IAO_0021000-IAO_0021999</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This file is based
on checkout of our SVN repository revision $Revision: 717 $ </rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This is the first
release of IAO that uses BFO 2.0 class only
(http://purl.obolibrary.org/obo/bfo/2014-05-03/classes-only.owl) and RO
core relations
(http://purl.obolibrary.org/obo/ro/releases/2015-02-11/core.owl)
+ </rdfs:comment>
+ <protege:defaultLanguage
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">en</protege:defaultLanguage>
+ <dc:contributor xml:lang="en">Adam Goldstein</dc:contributor>
+ <dc:contributor xml:lang="en">Alan Ruttenberg</dc:contributor>
+ <dc:contributor xml:lang="en">Albert Goldfain</dc:contributor>
+ <dc:contributor xml:lang="en">Barry Smith</dc:contributor>
+ <dc:contributor xml:lang="en">Bjoern Peters</dc:contributor>
+ <dc:contributor xml:lang="en">Carlo Torniai</dc:contributor>
+ <dc:contributor xml:lang="en">Chris Mungall</dc:contributor>
+ <dc:contributor xml:lang="en">Chris Stoeckert</dc:contributor>
+ <dc:contributor xml:lang="en">Christian A.
Boelling</dc:contributor>
+ <dc:contributor xml:lang="en">Darren Natale</dc:contributor>
+ <dc:contributor xml:lang="en">David
Osumi-Sutherland</dc:contributor>
+ <dc:contributor xml:lang="en">Gwen Frishkoff</dc:contributor>
+ <dc:contributor xml:lang="en">Holger Stenzhorn</dc:contributor>
+ <dc:contributor xml:lang="en">James A. Overton</dc:contributor>
+ <dc:contributor xml:lang="en">James Malone</dc:contributor>
+ <dc:contributor xml:lang="en">Jennifer Fostel</dc:contributor>
+ <dc:contributor xml:lang="en">Jie Zheng</dc:contributor>
+ <dc:contributor xml:lang="en">Jonathan Rees</dc:contributor>
+ <dc:contributor xml:lang="en">Larisa Soldatova</dc:contributor>
+ <dc:contributor xml:lang="en">Lawrence Hunter</dc:contributor>
+ <dc:contributor xml:lang="en">Mathias Brochhausen</dc:contributor>
+ <dc:contributor xml:lang="en">Matt Brush</dc:contributor>
+ <dc:contributor xml:lang="en">Melanie Courtot</dc:contributor>
+ <dc:contributor xml:lang="en">Michel Dumontier</dc:contributor>
+ <dc:contributor xml:lang="en">Paolo Ciccarese</dc:contributor>
+ <dc:contributor xml:lang="en">Pat Hayes</dc:contributor>
+ <dc:contributor xml:lang="en">Philippe Rocca-Serra</dc:contributor>
+ <dc:contributor xml:lang="en">Randy Dipert</dc:contributor>
+ <dc:contributor xml:lang="en">Ron Rudnicki</dc:contributor>
+ <dc:contributor xml:lang="en">Satya Sahoo</dc:contributor>
+ <dc:contributor xml:lang="en">Sivaram Arabandi</dc:contributor>
+ <dc:contributor xml:lang="en">Werner Ceusters</dc:contributor>
+ <dc:contributor xml:lang="en">William Duncan</dc:contributor>
+ <dc:contributor xml:lang="en">William Hogan</dc:contributor>
+ <dc:contributor xml:lang="en">Yongqun (Oliver) He</dc:contributor>
+ <foaf:homepage
rdf:resource="http://code.google.com/p/information-artifact-ontology/"/>
+ <dc:license
rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
+ <owl:versionIRI
rdf:resource="http://purl.obolibrary.org/obo/iao/2015-02-23/iao.owl"/>
+ </owl:Ontology>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000179">
+ <rdfs:label xml:lang="en">BFO OWL specification label</rdfs:label>
+ <obo:IAO_0000232 xml:lang="en">Really of interest to developers
only</obo:IAO_0000232>
+ <obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology
to the name of the variable that is used to represent it in the code that
generates the BFO OWL file from the lispy specification.</obo:IAO_0000115>
+ <rdfs:subPropertyOf
rdf:resource="http://www.w3.org/2000/01/rdf-schema#label"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000180">
+ <rdfs:label xml:lang="en">BFO CLIF specification label</rdfs:label>
+ <obo:IAO_0000119>Person:Alan Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000232 xml:lang="en">Really of interest to developers
only</obo:IAO_0000232>
+ <obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology
to the term that is used to represent it in the the CLIF specification of
BFO2</obo:IAO_0000115>
+ <rdfs:subPropertyOf
rdf:resource="http://www.w3.org/2000/01/rdf-schema#label"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
+ <rdfs:label xml:lang="en">editor preferred label</rdfs:label>
+ <rdfs:label>editor preferred term</rdfs:label>
+ <rdfs:label xml:lang="en">editor preferred term</rdfs:label>
+ <obo:IAO_0000111>editor preferred term</obo:IAO_0000111>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The concise, meaningful, and
human-friendly name for a class or property preferred by the ontology
developers. (US-English)</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
label</obo:IAO_0000111>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
term</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
+ <rdfs:label xml:lang="en">example of usage</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A phrase describing how a class
name should be used. May also include other kinds of examples that
facilitate immediate understanding of a class semantics, such as widely
known prototypical subclasses or instances of the class. Although essential
for high level terms, examples for low level terms (e.g., Affymetrix HU133
array) are not</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">example</obo:IAO_0000111>
+ <obo:IAO_0000111 xml:lang="en">example of usage</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000113">
+ <rdfs:label xml:lang="en">in branch</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An annotation property indicating
which module the terms belong to. This is currently experimental and not
implemented yet.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">GROUP:OBI</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000277</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">in branch</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
+ <rdfs:label xml:lang="en">has curation status</rdfs:label>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has curation
status</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</rdfs:label>
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">textual
definition</rdfs:label>
+ <rdfs:label>definition</rdfs:label>
+ <rdfs:label xml:lang="en">definition</rdfs:label>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</obo:IAO_0000111>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">textual
definition</obo:IAO_0000111>
+ <obo:IAO_0000116 xml:lang="en">2012-04-05:
+Barry Smith
+
+The official OBI definition, explaining the meaning of a class or
property: 'Shall be Aristotelian, formalized and normalized. Can be
augmented with colloquial definitions' is terrible.
+
+Can you fix to something like:
+
+A statement of necessary and sufficient conditions explaining the meaning
of an expression referring to a class or property.
+
+Alan Ruttenberg
+
+Your proposed definition is a reasonable candidate, except that it is very
common that necessary and sufficient conditions are not given. Mostly they
are necessary, occasionally they are necessary and sufficient or just
sufficient. Often they use terms that are not themselves defined and so
they effectively can't be evaluated by those criteria.
+
+On the specifics of the proposed definition:
+
+We don't have definitions of 'meaning' or
'expression' or 'property'. For 'reference'
in the intended sense I think we use the term 'denotation'. For
'expression', I think we you mean symbol, or identifier. For
'meaning' it differs for class and property. For class we want
documentation that let's the intended reader determine whether an
entity is instance of the class, or not. For property we want documentation
that let's the intended reader determine, given a pair of potential
relata, whether the assertion that the relation holds is true. The
'intended reader' part suggests that we also specify who, we
expect, would be able to understand the definition, and also generalizes
over human and computer reader to include textual and logical definition.
+
+Personally, I am more comfortable weakening definition to documentation,
with instructions as to what is desirable.
+
+We also have the outstanding issue of how to aim different definitions to
different audiences. A clinical audience reading chebi wants a different
sort of definition documentation/definition from a chemistry trained
audience, and similarly there is a need for a definition that is adequate
for an ontologist to work with. </obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">The official definition, explaining
the meaning of a class or property. Shall be Aristotelian, formalized and
normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
+ <obo:IAO_0000111>definition</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The official OBI definition,
explaining the meaning of a class or property. Shall be Aristotelian,
formalized and normalized. Can be augmented with colloquial
definitions.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
+ <rdfs:label xml:lang="en">editor note</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An administrative note intended for
its editor. It may not be included in the publication version of the
ontology, so it should contain nothing necessary for end users to
understand the ontology.</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
+ <rdfs:label xml:lang="en">term editor</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term
editor and definition modified accordingly. See
http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">Name of editor entering the term in
the file. The term editor is a point of contact for information regarding
the term. The term editor may be, but is not always, the author of the
definition, which may have been worked upon by several
people</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
+ <rdfs:label xml:lang="en">alternative term</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An alternative name for a class or
property which means the same thing as the preferred name (semantically
equivalent)</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
+ <rdfs:label xml:lang="en">definition source</rdfs:label>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Discussion on
obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
+ <obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in
external database to indicate / attribute source(s) for the definition.
Free text indicate / attribute source(s) for the definition. EXAMPLE:
Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on
31.01.2007</obo:IAO_0000115>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000231">
+ <rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Relates an annotation property to
an obsolescence reason. The values of obsolescence reasons come from a list
of predefined terms, instances of the class obsolescence reason
specification.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">has obsolescence
reason</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
+ <rdfs:label xml:lang="en">curator note</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An administrative note of use for a
curator but of no use for a user</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000411">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">is denotator
type</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In OWL 2 add
AnnotationPropertyRange('is denotator type' 'denotator
type')</obo:IAO_0000116>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relates an class
defined in an ontology, to the type of it's denotator</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">is denotator type</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
+ <rdfs:label xml:lang="en">imported from</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">For external terms/classes, the
ontology from which the term was imported</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000424">
+ <rdfs:label xml:lang="en">expand expression to</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chris
Mungall</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an
object property (or possibly a data property) which can be used by a
macro-expansion engine to generate more complex expressions from simpler
ones</obo:IAO_0000115>
+ <obo:IAO_0000112 xml:lang="en">ObjectProperty: RO_0002104
+Label: has plasma membrane part
+Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051
some (http://purl.org/obo/owl/GO#GO_0005886 and
http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
+</obo:IAO_0000112>
+ <obo:IAO_0000111 xml:lang="en">expand expression
to</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000425">
+ <rdfs:label xml:lang="en">expand assertion to</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an
annotation property which can be expanded into a more detailed
axiom.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
+ <obo:IAO_0000112 xml:lang="en">ObjectProperty: RO???
+Label: spatially disjoint from
+Annotations: expand_assertion_to "DisjointClasses:
(http://purl.obolibrary.org/obo/BFO_0000051 some ?X)
(http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
+</obo:IAO_0000112>
+ <obo:IAO_0000111 xml:lang="en">expand assertion
to</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000426">
+ <rdfs:label xml:lang="en">first order logic expression</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">first order logic
expression</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000427">
+ <rdfs:label xml:lang="en">antisymmetric property</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">antisymmetric
property</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">part_of antisymmetric property
xsd:true</obo:IAO_0000112>
+ <obo:IAO_0000115 xml:lang="en">use boolean value xsd:true to
indicate that the property is an antisymmetric property</obo:IAO_0000115>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000589">
+ <rdfs:label xml:lang="en">OBO foundry unique label</rdfs:label>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The intended usage
of that property is as follow: OBO foundry unique labels are automatically
generated based on regular expressions provided by each ontology, so that
SO could specify unique label = 'sequence ' + [label], etc. , MA
could specify 'mouse + [label]' etc. Upon importing terms,
ontology developers can choose to use the 'OBO foundry unique
label' for an imported term or not. The same applies to
tools .</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">An alternative name for a class or
property which is unique across the OBO Foundry.</obo:IAO_0000115>
+ <obo:IAO_0000119 xml:lang="en">GROUP:OBO Foundry
<http://obofoundry.org/></obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">OBO foundry unique
label</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Chris
Mungall</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000596">
+ <rdfs:label xml:lang="en">has ID digit count</rdfs:label>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115>Relates an ontology used to record id policy to
the number of digits in the URI. The URI is: the 'has ID prefix"
annotation property value concatenated with an integer in the id range
(left padded with "0"s to make this many digits)</obo:IAO_0000115>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000597">
+ <rdfs:label xml:lang="en">has ID range allocated to</rdfs:label>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115>Relates a datatype that encodes a range of
integers to the name of the person or organization who can use those ids
constructed in that range to define new terms</obo:IAO_0000115>
+ <obo:IAO_0000112>Datatype: idrange:1
+Annotations: 'has ID range allocated to': "Chris
Mungall"
+EquivalentTo: xsd:integer[> 2151 , <= 2300]
+</obo:IAO_0000112>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000598">
+ <rdfs:label>has ID policy for</rdfs:label>
+ <obo:IAO_0000115>Relating an ontology used to record id policy to
the ontology namespace whose policy it manages</obo:IAO_0000115>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000599">
+ <rdfs:label xml:lang="en">has ID prefix</rdfs:label>
+ <obo:IAO_0000115>Relates an ontology used to record id policy to a
prefix concatenated with an integer in the id range (left padded with
"0"s to make this many digits) to construct an ID for a term
being created.</obo:IAO_0000115>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000600">
+ <rdfs:label xml:lang="en">elucidation</rdfs:label>
+ <obo:IAO_0000119 xml:lang="en">Person:Barry Smith</obo:IAO_0000119>
+ <obo:IAO_0000600 xml:lang="en">Primitive terms in a highest-level
ontology such as BFO are terms which are so basic to our understanding of
reality that there is no way of defining them in a non-circular fashion.
For these, therefore, we can provide only elucidations, supplemented by
examples and by axioms</obo:IAO_0000600>
+ <obo:IAO_0000111 xml:lang="en">elucidation</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000601">
+ <rdfs:label xml:lang="en">has associated axiom(nl)</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">An axiom associated with a term
expressed using natural language</obo:IAO_0000600>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has associated
axiom(nl)</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000602">
+ <rdfs:label xml:lang="en">has associated axiom(fol)</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">An axiom expressed in first order
logic using CLIF syntax</obo:IAO_0000600>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">has associated
axiom(fol)</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000603">
+ <rdfs:label xml:lang="en">is allocated id range</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Add as annotation triples in the
granting ontology</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Relates an ontology IRI to an
(inclusive) range of IRIs in an OBO name space. The range is give as, e.g.
"IAO_0020000-IAO_0020999"</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">is allocated id
range</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000604">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">retired from use as
of</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In OWL 2 add
AnnotationPropertyRange xsd:dateTimeStamp</obo:IAO_0000116>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relates a class of
CRID to the date after which further instances should not be made,
according to the central authority</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">retired from use as
of</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0010000">
+ <rdfs:label xml:lang="en">has axiom label</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">A URI that is intended to be unique
label for an axiom used for tracking change to the ontology. For an axiom
expressed in different languages, each expression is given the same
URI</obo:IAO_0000600>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has axiom id</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
+ <rdfs:label xml:lang="en">term replaced by</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Add as annotation triples in the
granting ontology</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the
term to another term that can be used as a substitute</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">term replaced by</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/RO_0001900">
+ <rdfs:label xml:lang="en">temporal interpretation</rdfs:label>
+ <foaf:page
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://code.google.com/p/obo-relations/wiki/ROAndTime</foaf:page>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/contributor">
+ <rdfs:label xml:lang="en-us">Contributor</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An entity responsible for making
contributions to the
+ content of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Examples of a Contributor include
a person, an
+ organisation, or a service. Typically, the name of a
+ Contributor should be used to indicate the
entity.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/coverage">
+ <rdfs:label xml:lang="en-us">Coverage</rdfs:label>
+ <dc:description xml:lang="en-us">Coverage will typically include
spatial location (a place name
+ or geographic coordinates), temporal period (a period label,
+ date, or date range) or jurisdiction (such as a named
+ administrative entity).
+ Recommended best practice is to select a value from a
+ controlled vocabulary (for example, the Thesaurus of Geographic
+ Names [TGN]) and that, where appropriate, named places or time
+ periods be used in preference to numeric identifiers such as
+ sets of coordinates or date ranges.</dc:description>
+ <rdfs:comment xml:lang="en-us">The extent or scope of the content
of the resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/creator">
+ <rdfs:label xml:lang="en-us">Creator</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An entity primarily responsible for
making the content
+ of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Examples of a Creator include a
person, an organisation,
+ or a service. Typically, the name of a Creator should
+ be used to indicate the entity.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/date">
+ <rdfs:label xml:lang="en-us">Date</rdfs:label>
+ <rdfs:comment xml:lang="en-us">A date associated with an event in
the life cycle of the
+ resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Typically, Date will be
associated with the creation or
+ availability of the resource. Recommended best practice
+ for encoding the date value is defined in a profile of
+ ISO 8601 [W3CDTF] and follows the YYYY-MM-DD
format.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/description">
+ <rdfs:label xml:lang="en-us">Description</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An account of the content of the
resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Description may include but is
not limited to: an abstract,
+ table of contents, reference to a graphical representation
+ of content or a free-text account of the content.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/format">
+ <rdfs:label xml:lang="en-us">Format</rdfs:label>
+ <rdfs:comment xml:lang="en-us">The physical or digital
manifestation of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Typically, Format may include the
media-type or dimensions of
+ the resource. Format may be used to determine the software,
+ hardware or other equipment needed to display or operate the
+ resource. Examples of dimensions include size and duration.
+ Recommended best practice is to select a value from a
+ controlled vocabulary (for example, the list of Internet Media
+ Types [MIME] defining computer media formats).</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/identifier">
+ <rdfs:label xml:lang="en-us">Resource Identifier</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An unambiguous reference to the
resource within a given context.</rdfs:comment>
+ <dc:description xml:lang="en-us">Recommended best practice is to
identify the resource by means
+ of a string or number conforming to a formal identification
+ system.
+ Example formal identification systems include the Uniform
+ Resource Identifier (URI) (including the Uniform Resource
+ Locator (URL)), the Digital Object Identifier (DOI) and the
+ International Standard Book Number (ISBN).</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/language">
+ <rdfs:label xml:lang="en-us">Language</rdfs:label>
+ <rdfs:comment xml:lang="en-us">A language of the intellectual
content of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Recommended best practice is to
use RFC 3066 [RFC3066],
+ which, in conjunction with ISO 639 [ISO639], defines two-
+ and three-letter primary language tags with optional
+ subtags. Examples include "en" or "eng" for
English,
+ "akk" for Akkadian, and "en-GB" for English
used in the
+ United Kingdom.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/member"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/publisher">
+ <rdfs:label xml:lang="en-us">Publisher</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An entity responsible for making
the resource available</rdfs:comment>
+ <dc:description xml:lang="en-us">Examples of a Publisher include a
person, an organisation,
+ or a service.
+ Typically, the name of a Publisher should be used to
+ indicate the entity.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/relation">
+ <rdfs:label xml:lang="en-us">Relation</rdfs:label>
+ <dc:description xml:lang="en-us">
+ Recommended best practice is to reference the resource by means
+ of a string or number conforming to a formal identification
+ system.
+ </dc:description>
+ <rdfs:comment xml:lang="en-us">A reference to a related
resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/rights">
+ <rdfs:label xml:lang="en-us">Rights Management</rdfs:label>
+ <dc:description xml:lang="en-us">
+ Typically, a Rights element will contain a rights
+ management statement for the resource, or reference
+ a service providing such information. Rights information
+ often encompasses Intellectual Property Rights (IPR),
+ Copyright, and various Property Rights.
+ If the Rights element is absent, no assumptions can be made
+ about the status of these and other rights with respect to
+ the resource.
+ </dc:description>
+ <rdfs:comment xml:lang="en-us">Information about rights held in
and over the resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/source">
+ <rdfs:label xml:lang="en-us">Source</rdfs:label>
+ <rdfs:comment xml:lang="en-us">A reference to a resource from
which the present resource
+ is derived.</rdfs:comment>
+ <dc:description xml:lang="en-us">The present resource may be
derived from the Source resource
+ in whole or in part. Recommended best practice is to reference
+ the resource by means of a string or number conforming to a
+ formal identification system.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/subject">
+ <rdfs:label xml:lang="en-us">Subject and Keywords</rdfs:label>
+ <rdfs:comment xml:lang="en-us">The topic of the content of the
resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Typically, a Subject will be
expressed as keywords,
+ key phrases or classification codes that describe a topic
+ of the resource. Recommended best practice is to select
+ a value from a controlled vocabulary or formal
+ classification scheme.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/title">
+ <rdfs:label xml:lang="en-us">Title</rdfs:label>
+ <dc:description xml:lang="en-us">
+ Typically, a Title will be a name by which the resource is
+ formally known.
+ </dc:description>
+ <rdfs:comment xml:lang="en-us">A name given to the
resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/type">
+ <rdfs:label xml:lang="en-us">Resource Type</rdfs:label>
+ <rdfs:comment xml:lang="en-us">The nature or genre of the content
of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Type includes terms describing
general categories, functions,
+ genres, or aggregation levels for content. Recommended best
+ practice is to select a value from a controlled vocabulary
+ (for example, the DCMI Type Vocabulary [DCMITYPE]). To
+ describe the physical or digital manifestation of the
+ resource, use the Format element.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">shorthand</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#isDefinedBy"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2002/07/owl#versionInfo"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://xmlns.com/foaf/0.1/homepage"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/page"/>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
+ <rdfs:label xml:lang="en">part of</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">Everything is part of itself. Any
part of any part of a thing is itself part of that thing. Two distinct
things cannot be part of each other.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Occurrents are not subject to
change and so parthood between occurrents holds for all the times that the
part exists. Many continuants are subject to change, so parthood between
continuants will only hold at certain times, but this is difficult to
specify in OWL. See
https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Parthood requires the part and the
whole to have compatible classes: only an occurrent can be part of an
occurrent; only a process can be part of a process; only a continuant can
be part of a continuant; only an independent continuant can be part of an
independent continuant; only an immaterial entity can be part of an
immaterial entity; only a specifically dependent continuant can be part of
a specifically dependent continuant; only a generically dependent
continuant can be part of a generically dependent continuant. (This list is
not exhaustive.)
+
+A continuant cannot be part of an occurrent: use 'participates
in'. An occurrent cannot be part of a continuant: use 'has
participant'. A material entity cannot be part of an immaterial
entity: use 'has location'. A specifically dependent continuant
cannot be part of an independent continuant: use 'inheres in'. An
independent continuant cannot be part of a specifically dependent
continuant: use 'bearer of'.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">a core relation that holds between
a part and its whole</obo:IAO_0000115>
+
<rdfs:seeAlso>http://www.obofoundry.org/ro/#OBO_REL:part_of</rdfs:seeAlso>
+ <obo:IAO_0000111 xml:lang="en">is part of</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">my brain is part of my body
(continuant parthood, two material entities)</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">my stomach cavity is part of my
stomach (continuant parthood, immaterial entity is part of material
entity)</obo:IAO_0000112>
+ <obo:IAO_0000118 xml:lang="en">part_of</obo:IAO_0000118>
+ <obo:IAO_0000112 xml:lang="en">this day is part of this year
(occurrent parthood)</obo:IAO_0000112>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
+ <obo:RO_0001900
rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
+ <rdfs:label xml:lang="en">has part</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">Everything has itself as a part.
Any part of any part of a thing is itself part of that thing. Two distinct
things cannot have each other as a part.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Occurrents are not subject to
change and so parthood between occurrents holds for all the times that the
part exists. Many continuants are subject to change, so parthood between
continuants will only hold at certain times, but this is difficult to
specify in OWL. See
https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Parthood requires the part and the
whole to have compatible classes: only an occurrent have an occurrent as
part; only a process can have a process as part; only a continuant can have
a continuant as part; only an independent continuant can have an
independent continuant as part; only a specifically dependent continuant
can have a specifically dependent continuant as part; only a generically
dependent continuant can have a generically dependent continuant as part.
(This list is not exhaustive.)
+
+A continuant cannot have an occurrent as part: use 'participates
in'. An occurrent cannot have a continuant as part: use 'has
participant'. An immaterial entity cannot have a material entity as
part: use 'location of'. An independent continuant cannot have a
specifically dependent continuant as part: use 'bearer of'. A
specifically dependent continuant cannot have an independent continuant as
part: use 'inheres in'.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">a core relation that holds between
a whole and its part</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">has part</obo:IAO_0000111>
+ <obo:IAO_0000118 xml:lang="en">has_part</obo:IAO_0000118>
+ <obo:IAO_0000112 xml:lang="en">my body has part my brain
(continuant parthood, two material entities)</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">my stomach has part my stomach
cavity (continuant parthood, material entity has part immaterial
entity)</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this year has part this day
(occurrent parthood)</obo:IAO_0000112>
+ <obo:RO_0001900
rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000054">
+ <rdfs:label xml:lang="en">realized in</rdfs:label>
+ <rdfs:comment>Paraphrase of elucidation: a relation between a
realizable entity and a process, where there is some material entity that
is bearer of the realizable entity and participates in the process, and the
realizable entity comes to be realized in the course of the
process</rdfs:comment>
+ <obo:IAO_0000600 xml:lang="en">[copied from inverse property
'realizes'] to say that b realizes c at t is to assert that there
is some material entity d & b is a process which has participant d at t
& c is a disposition or role of which d is bearer_of at t& the type
instantiated by b is correlated with the type instantiated by c. (axiom
label in BFO2 Reference: [059-003])</obo:IAO_0000600>
+ <obo:IAO_0000118 xml:lang="en">is realized by</obo:IAO_0000118>
+ <obo:IAO_0000111 xml:lang="en">realized in</obo:IAO_0000111>
+ <obo:IAO_0000118 xml:lang="en">realized_in</obo:IAO_0000118>
+ <obo:IAO_0000112 xml:lang="en">this disease is realized in this
disease course</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this fragility is realized in this
shattering</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this investigator role is realized
in this investigation</obo:IAO_0000112>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000055">
+ <rdfs:label xml:lang="en">realizes</rdfs:label>
+ <rdfs:comment>Paraphrase of elucidation: a relation between a
process and a realizable entity, where there is some material entity that
is bearer of the realizable entity and participates in the process, and the
realizable entity comes to be realized in the course of the
process</rdfs:comment>
+ <obo:IAO_0000111 xml:lang="en">realizes</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">this disease course realizes this
disease</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this investigation realizes this
investigator role</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this shattering realizes this
fragility</obo:IAO_0000112>
+ <obo:IAO_0000600 xml:lang="en">to say that b realizes c at t is to
assert that there is some material entity d & b is a process which has
participant d at t & c is a disposition or role of which d is bearer_of
at t& the type instantiated by b is correlated with the type
instantiated by c. (axiom label in BFO2 Reference:
[059-003])</obo:IAO_0000600>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000066">
+ <rdfs:label xml:lang="en">occurs in</rdfs:label>
+ <rdfs:comment>Paraphrase of definition: a relation between a
process and an independent continuant, in which the process takes place
entirely within the independent continuant</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">b occurs_in c =def b is a process
and c is a material entity or immaterial entity& there exists a
spatiotemporal region r and b occupies_spatiotemporal_region r.&
forall(t) if b exists_at t then c exists_at t & there exist spatial
regions s and s’ where & b spatially_projects_onto s at t& c is
occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at
t</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">occurs in</obo:IAO_0000111>
+ <obo:IAO_0000118 xml:lang="en">occurs_in</obo:IAO_0000118>
+ <obo:IAO_0000118 xml:lang="en">unfolds in</obo:IAO_0000118>
+ <obo:IAO_0000118 xml:lang="en">unfolds_in</obo:IAO_0000118>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000067"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
+ <owl:propertyChainAxiom rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
+ </owl:propertyChainAxiom>
+ <owl:propertyChainAxiom rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ </owl:propertyChainAxiom>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000067">
+ <rdfs:label xml:lang="en">contains process</rdfs:label>
+ <rdfs:comment>Paraphrase of definition: a relation between an
independent continuant and a process, in which the process takes place
entirely within the independent continuant</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">[copied from inverse property
'occurs in'] b occurs_in c =def b is a process and c is a
material entity or immaterial entity& there exists a spatiotemporal
region r and b occupies_spatiotemporal_region r.& forall(t) if b
exists_at t then c exists_at t & there exist spatial regions s and s’
where & b spatially_projects_onto s at t& c is
occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at
t</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">site of</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000039">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
+ <rdfs:label xml:lang="en">has measurement unit label</rdfs:label>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000135">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_specifically
denotes</rdfs:label>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">8/6/2009 Alan
Ruttenberg: The suggestions is to deprecate specific and generically
denotes in favor of a single denote relationship that corresponds to the
generic sense</obo:IAO_0000116>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Smith, Ceusters,
Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
+ <obo:IAO_0000112
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The process of
creation is, for example, writing down on paper the name of a friend by
deliberately creating a certain pattern using ink.
+
+Here the ink + paper is the independent continuant and the carrier is the
pattern in the ink.
+
+c = pattern in the ink
+b = paper + ink
+r = friend</obo:IAO_0000112>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">c specifically
denotes r =def
+r is a portion of reality
+& c is a particular quality
+& c depends specifically on some independent continuant b
+& b acquired c as the result of the achievement of an objective to
enable pointing to r repeatedly.
+
+Marked means there is a changed or additional quality of the bearer - the
quality is the information carrier.
+
+Case 1
+Memory trace as mark created when reading some description of some friend.
The trace can denote.
***The diff for this file has been truncated for email.***
=======================================
--- /dev/null
+++ /releases/2015-02-23/merged/iao_merged_inferredSuper.owl Mon Feb 23
23:43:12 2015 UTC
@@ -0,0 +1,6143 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/iao_merged.owl#"
+ xml:base="http://purl.obolibrary.org/obo/iao_merged.owl"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:foaf="http://xmlns.com/foaf/0.1/"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/iao_merged.owl">
+ <dc:date
rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2009-07-31</dc:date>
+ <owl:versionInfo
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2015-02-23</owl:versionInfo>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An information
artifact is, loosely, a dependent continuant or its bearer that is created
as the result of one or more intentional processes. Examples: uniprot, the
english language, the contents of this document or a printout of it, the
temperature measurements from a weather balloon. For more information, see
the project home page at
http://code.google.com/p/information-artifact-ontology/</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IDs allocated to
related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS:
IAO_0021000-IAO_0021999</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IDs allocated to
subdomains of IAO. pno.owl: IAO_0020000-IAO_0020999, d-acts.owl:
IAO_0021000-IAO_0021999</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This file is based
on checkout of our SVN repository revision $Revision: 717 $ </rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This is the first
release of IAO that uses BFO 2.0 class only
(http://purl.obolibrary.org/obo/bfo/2014-05-03/classes-only.owl) and RO
core relations
(http://purl.obolibrary.org/obo/ro/releases/2015-02-11/core.owl)
+ </rdfs:comment>
+ <protege:defaultLanguage
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">en</protege:defaultLanguage>
+ <dc:contributor xml:lang="en">Adam Goldstein</dc:contributor>
+ <dc:contributor xml:lang="en">Alan Ruttenberg</dc:contributor>
+ <dc:contributor xml:lang="en">Albert Goldfain</dc:contributor>
+ <dc:contributor xml:lang="en">Barry Smith</dc:contributor>
+ <dc:contributor xml:lang="en">Bjoern Peters</dc:contributor>
+ <dc:contributor xml:lang="en">Carlo Torniai</dc:contributor>
+ <dc:contributor xml:lang="en">Chris Mungall</dc:contributor>
+ <dc:contributor xml:lang="en">Chris Stoeckert</dc:contributor>
+ <dc:contributor xml:lang="en">Christian A.
Boelling</dc:contributor>
+ <dc:contributor xml:lang="en">Darren Natale</dc:contributor>
+ <dc:contributor xml:lang="en">David
Osumi-Sutherland</dc:contributor>
+ <dc:contributor xml:lang="en">Gwen Frishkoff</dc:contributor>
+ <dc:contributor xml:lang="en">Holger Stenzhorn</dc:contributor>
+ <dc:contributor xml:lang="en">James A. Overton</dc:contributor>
+ <dc:contributor xml:lang="en">James Malone</dc:contributor>
+ <dc:contributor xml:lang="en">Jennifer Fostel</dc:contributor>
+ <dc:contributor xml:lang="en">Jie Zheng</dc:contributor>
+ <dc:contributor xml:lang="en">Jonathan Rees</dc:contributor>
+ <dc:contributor xml:lang="en">Larisa Soldatova</dc:contributor>
+ <dc:contributor xml:lang="en">Lawrence Hunter</dc:contributor>
+ <dc:contributor xml:lang="en">Mathias Brochhausen</dc:contributor>
+ <dc:contributor xml:lang="en">Matt Brush</dc:contributor>
+ <dc:contributor xml:lang="en">Melanie Courtot</dc:contributor>
+ <dc:contributor xml:lang="en">Michel Dumontier</dc:contributor>
+ <dc:contributor xml:lang="en">Paolo Ciccarese</dc:contributor>
+ <dc:contributor xml:lang="en">Pat Hayes</dc:contributor>
+ <dc:contributor xml:lang="en">Philippe Rocca-Serra</dc:contributor>
+ <dc:contributor xml:lang="en">Randy Dipert</dc:contributor>
+ <dc:contributor xml:lang="en">Ron Rudnicki</dc:contributor>
+ <dc:contributor xml:lang="en">Satya Sahoo</dc:contributor>
+ <dc:contributor xml:lang="en">Sivaram Arabandi</dc:contributor>
+ <dc:contributor xml:lang="en">Werner Ceusters</dc:contributor>
+ <dc:contributor xml:lang="en">William Duncan</dc:contributor>
+ <dc:contributor xml:lang="en">William Hogan</dc:contributor>
+ <dc:contributor xml:lang="en">Yongqun (Oliver) He</dc:contributor>
+ <foaf:homepage
rdf:resource="http://code.google.com/p/information-artifact-ontology/"/>
+ <dc:license
rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
+ <owl:versionIRI
rdf:resource="http://purl.obolibrary.org/obo/iao/2015-02-23/iao.owl"/>
+ </owl:Ontology>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000179">
+ <rdfs:label xml:lang="en">BFO OWL specification label</rdfs:label>
+ <obo:IAO_0000232 xml:lang="en">Really of interest to developers
only</obo:IAO_0000232>
+ <obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology
to the name of the variable that is used to represent it in the code that
generates the BFO OWL file from the lispy specification.</obo:IAO_0000115>
+ <rdfs:subPropertyOf
rdf:resource="http://www.w3.org/2000/01/rdf-schema#label"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000180">
+ <rdfs:label xml:lang="en">BFO CLIF specification label</rdfs:label>
+ <obo:IAO_0000119>Person:Alan Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000232 xml:lang="en">Really of interest to developers
only</obo:IAO_0000232>
+ <obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology
to the term that is used to represent it in the the CLIF specification of
BFO2</obo:IAO_0000115>
+ <rdfs:subPropertyOf
rdf:resource="http://www.w3.org/2000/01/rdf-schema#label"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
+ <rdfs:label xml:lang="en">editor preferred label</rdfs:label>
+ <rdfs:label>editor preferred term</rdfs:label>
+ <rdfs:label xml:lang="en">editor preferred term</rdfs:label>
+ <obo:IAO_0000111>editor preferred term</obo:IAO_0000111>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The concise, meaningful, and
human-friendly name for a class or property preferred by the ontology
developers. (US-English)</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
label</obo:IAO_0000111>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
term</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
+ <rdfs:label xml:lang="en">example of usage</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A phrase describing how a class
name should be used. May also include other kinds of examples that
facilitate immediate understanding of a class semantics, such as widely
known prototypical subclasses or instances of the class. Although essential
for high level terms, examples for low level terms (e.g., Affymetrix HU133
array) are not</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">example</obo:IAO_0000111>
+ <obo:IAO_0000111 xml:lang="en">example of usage</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000113">
+ <rdfs:label xml:lang="en">in branch</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An annotation property indicating
which module the terms belong to. This is currently experimental and not
implemented yet.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">GROUP:OBI</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000277</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">in branch</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
+ <rdfs:label xml:lang="en">has curation status</rdfs:label>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has curation
status</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</rdfs:label>
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">textual
definition</rdfs:label>
+ <rdfs:label>definition</rdfs:label>
+ <rdfs:label xml:lang="en">definition</rdfs:label>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</obo:IAO_0000111>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">textual
definition</obo:IAO_0000111>
+ <obo:IAO_0000116 xml:lang="en">2012-04-05:
+Barry Smith
+
+The official OBI definition, explaining the meaning of a class or
property: 'Shall be Aristotelian, formalized and normalized. Can be
augmented with colloquial definitions' is terrible.
+
+Can you fix to something like:
+
+A statement of necessary and sufficient conditions explaining the meaning
of an expression referring to a class or property.
+
+Alan Ruttenberg
+
+Your proposed definition is a reasonable candidate, except that it is very
common that necessary and sufficient conditions are not given. Mostly they
are necessary, occasionally they are necessary and sufficient or just
sufficient. Often they use terms that are not themselves defined and so
they effectively can't be evaluated by those criteria.
+
+On the specifics of the proposed definition:
+
+We don't have definitions of 'meaning' or
'expression' or 'property'. For 'reference'
in the intended sense I think we use the term 'denotation'. For
'expression', I think we you mean symbol, or identifier. For
'meaning' it differs for class and property. For class we want
documentation that let's the intended reader determine whether an
entity is instance of the class, or not. For property we want documentation
that let's the intended reader determine, given a pair of potential
relata, whether the assertion that the relation holds is true. The
'intended reader' part suggests that we also specify who, we
expect, would be able to understand the definition, and also generalizes
over human and computer reader to include textual and logical definition.
+
+Personally, I am more comfortable weakening definition to documentation,
with instructions as to what is desirable.
+
+We also have the outstanding issue of how to aim different definitions to
different audiences. A clinical audience reading chebi wants a different
sort of definition documentation/definition from a chemistry trained
audience, and similarly there is a need for a definition that is adequate
for an ontologist to work with. </obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">The official definition, explaining
the meaning of a class or property. Shall be Aristotelian, formalized and
normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
+ <obo:IAO_0000111>definition</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The official OBI definition,
explaining the meaning of a class or property. Shall be Aristotelian,
formalized and normalized. Can be augmented with colloquial
definitions.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
+ <rdfs:label xml:lang="en">editor note</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An administrative note intended for
its editor. It may not be included in the publication version of the
ontology, so it should contain nothing necessary for end users to
understand the ontology.</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
+ <rdfs:label xml:lang="en">term editor</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term
editor and definition modified accordingly. See
http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">Name of editor entering the term in
the file. The term editor is a point of contact for information regarding
the term. The term editor may be, but is not always, the author of the
definition, which may have been worked upon by several
people</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
+ <rdfs:label xml:lang="en">alternative term</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An alternative name for a class or
property which means the same thing as the preferred name (semantically
equivalent)</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
+ <rdfs:label xml:lang="en">definition source</rdfs:label>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Discussion on
obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
+ <obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in
external database to indicate / attribute source(s) for the definition.
Free text indicate / attribute source(s) for the definition. EXAMPLE:
Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on
31.01.2007</obo:IAO_0000115>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000231">
+ <rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Relates an annotation property to
an obsolescence reason. The values of obsolescence reasons come from a list
of predefined terms, instances of the class obsolescence reason
specification.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">has obsolescence
reason</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
+ <rdfs:label xml:lang="en">curator note</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An administrative note of use for a
curator but of no use for a user</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000411">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">is denotator
type</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In OWL 2 add
AnnotationPropertyRange('is denotator type' 'denotator
type')</obo:IAO_0000116>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relates an class
defined in an ontology, to the type of it's denotator</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">is denotator type</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
+ <rdfs:label xml:lang="en">imported from</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">For external terms/classes, the
ontology from which the term was imported</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000424">
+ <rdfs:label xml:lang="en">expand expression to</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chris
Mungall</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an
object property (or possibly a data property) which can be used by a
macro-expansion engine to generate more complex expressions from simpler
ones</obo:IAO_0000115>
+ <obo:IAO_0000112 xml:lang="en">ObjectProperty: RO_0002104
+Label: has plasma membrane part
+Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051
some (http://purl.org/obo/owl/GO#GO_0005886 and
http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
+</obo:IAO_0000112>
+ <obo:IAO_0000111 xml:lang="en">expand expression
to</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000425">
+ <rdfs:label xml:lang="en">expand assertion to</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an
annotation property which can be expanded into a more detailed
axiom.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
+ <obo:IAO_0000112 xml:lang="en">ObjectProperty: RO???
+Label: spatially disjoint from
+Annotations: expand_assertion_to "DisjointClasses:
(http://purl.obolibrary.org/obo/BFO_0000051 some ?X)
(http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
+</obo:IAO_0000112>
+ <obo:IAO_0000111 xml:lang="en">expand assertion
to</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000426">
+ <rdfs:label xml:lang="en">first order logic expression</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">first order logic
expression</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000427">
+ <rdfs:label xml:lang="en">antisymmetric property</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">antisymmetric
property</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">part_of antisymmetric property
xsd:true</obo:IAO_0000112>
+ <obo:IAO_0000115 xml:lang="en">use boolean value xsd:true to
indicate that the property is an antisymmetric property</obo:IAO_0000115>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000589">
+ <rdfs:label xml:lang="en">OBO foundry unique label</rdfs:label>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The intended usage
of that property is as follow: OBO foundry unique labels are automatically
generated based on regular expressions provided by each ontology, so that
SO could specify unique label = 'sequence ' + [label], etc. , MA
could specify 'mouse + [label]' etc. Upon importing terms,
ontology developers can choose to use the 'OBO foundry unique
label' for an imported term or not. The same applies to
tools .</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">An alternative name for a class or
property which is unique across the OBO Foundry.</obo:IAO_0000115>
+ <obo:IAO_0000119 xml:lang="en">GROUP:OBO Foundry
<http://obofoundry.org/></obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">OBO foundry unique
label</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Chris
Mungall</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000596">
+ <rdfs:label xml:lang="en">has ID digit count</rdfs:label>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115>Relates an ontology used to record id policy to
the number of digits in the URI. The URI is: the 'has ID prefix"
annotation property value concatenated with an integer in the id range
(left padded with "0"s to make this many digits)</obo:IAO_0000115>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000597">
+ <rdfs:label xml:lang="en">has ID range allocated to</rdfs:label>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115>Relates a datatype that encodes a range of
integers to the name of the person or organization who can use those ids
constructed in that range to define new terms</obo:IAO_0000115>
+ <obo:IAO_0000112>Datatype: idrange:1
+Annotations: 'has ID range allocated to': "Chris
Mungall"
+EquivalentTo: xsd:integer[> 2151 , <= 2300]
+</obo:IAO_0000112>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000598">
+ <rdfs:label>has ID policy for</rdfs:label>
+ <obo:IAO_0000115>Relating an ontology used to record id policy to
the ontology namespace whose policy it manages</obo:IAO_0000115>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000599">
+ <rdfs:label xml:lang="en">has ID prefix</rdfs:label>
+ <obo:IAO_0000115>Relates an ontology used to record id policy to a
prefix concatenated with an integer in the id range (left padded with
"0"s to make this many digits) to construct an ID for a term
being created.</obo:IAO_0000115>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000600">
+ <rdfs:label xml:lang="en">elucidation</rdfs:label>
+ <obo:IAO_0000119 xml:lang="en">Person:Barry Smith</obo:IAO_0000119>
+ <obo:IAO_0000600 xml:lang="en">Primitive terms in a highest-level
ontology such as BFO are terms which are so basic to our understanding of
reality that there is no way of defining them in a non-circular fashion.
For these, therefore, we can provide only elucidations, supplemented by
examples and by axioms</obo:IAO_0000600>
+ <obo:IAO_0000111 xml:lang="en">elucidation</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000601">
+ <rdfs:label xml:lang="en">has associated axiom(nl)</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">An axiom associated with a term
expressed using natural language</obo:IAO_0000600>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has associated
axiom(nl)</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000602">
+ <rdfs:label xml:lang="en">has associated axiom(fol)</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">An axiom expressed in first order
logic using CLIF syntax</obo:IAO_0000600>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">has associated
axiom(fol)</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000603">
+ <rdfs:label xml:lang="en">is allocated id range</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Add as annotation triples in the
granting ontology</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Relates an ontology IRI to an
(inclusive) range of IRIs in an OBO name space. The range is give as, e.g.
"IAO_0020000-IAO_0020999"</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">is allocated id
range</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000604">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">retired from use as
of</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In OWL 2 add
AnnotationPropertyRange xsd:dateTimeStamp</obo:IAO_0000116>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relates a class of
CRID to the date after which further instances should not be made,
according to the central authority</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">retired from use as
of</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0010000">
+ <rdfs:label xml:lang="en">has axiom label</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">A URI that is intended to be unique
label for an axiom used for tracking change to the ontology. For an axiom
expressed in different languages, each expression is given the same
URI</obo:IAO_0000600>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has axiom id</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
+ <rdfs:label xml:lang="en">term replaced by</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Add as annotation triples in the
granting ontology</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the
term to another term that can be used as a substitute</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">term replaced by</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/RO_0001900">
+ <rdfs:label xml:lang="en">temporal interpretation</rdfs:label>
+ <foaf:page
rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://code.google.com/p/obo-relations/wiki/ROAndTime</foaf:page>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/contributor">
+ <rdfs:label xml:lang="en-us">Contributor</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An entity responsible for making
contributions to the
+ content of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Examples of a Contributor include
a person, an
+ organisation, or a service. Typically, the name of a
+ Contributor should be used to indicate the
entity.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/coverage">
+ <rdfs:label xml:lang="en-us">Coverage</rdfs:label>
+ <dc:description xml:lang="en-us">Coverage will typically include
spatial location (a place name
+ or geographic coordinates), temporal period (a period label,
+ date, or date range) or jurisdiction (such as a named
+ administrative entity).
+ Recommended best practice is to select a value from a
+ controlled vocabulary (for example, the Thesaurus of Geographic
+ Names [TGN]) and that, where appropriate, named places or time
+ periods be used in preference to numeric identifiers such as
+ sets of coordinates or date ranges.</dc:description>
+ <rdfs:comment xml:lang="en-us">The extent or scope of the content
of the resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/creator">
+ <rdfs:label xml:lang="en-us">Creator</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An entity primarily responsible for
making the content
+ of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Examples of a Creator include a
person, an organisation,
+ or a service. Typically, the name of a Creator should
+ be used to indicate the entity.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/date">
+ <rdfs:label xml:lang="en-us">Date</rdfs:label>
+ <rdfs:comment xml:lang="en-us">A date associated with an event in
the life cycle of the
+ resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Typically, Date will be
associated with the creation or
+ availability of the resource. Recommended best practice
+ for encoding the date value is defined in a profile of
+ ISO 8601 [W3CDTF] and follows the YYYY-MM-DD
format.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/description">
+ <rdfs:label xml:lang="en-us">Description</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An account of the content of the
resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Description may include but is
not limited to: an abstract,
+ table of contents, reference to a graphical representation
+ of content or a free-text account of the content.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/format">
+ <rdfs:label xml:lang="en-us">Format</rdfs:label>
+ <rdfs:comment xml:lang="en-us">The physical or digital
manifestation of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Typically, Format may include the
media-type or dimensions of
+ the resource. Format may be used to determine the software,
+ hardware or other equipment needed to display or operate the
+ resource. Examples of dimensions include size and duration.
+ Recommended best practice is to select a value from a
+ controlled vocabulary (for example, the list of Internet Media
+ Types [MIME] defining computer media formats).</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/identifier">
+ <rdfs:label xml:lang="en-us">Resource Identifier</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An unambiguous reference to the
resource within a given context.</rdfs:comment>
+ <dc:description xml:lang="en-us">Recommended best practice is to
identify the resource by means
+ of a string or number conforming to a formal identification
+ system.
+ Example formal identification systems include the Uniform
+ Resource Identifier (URI) (including the Uniform Resource
+ Locator (URL)), the Digital Object Identifier (DOI) and the
+ International Standard Book Number (ISBN).</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/language">
+ <rdfs:label xml:lang="en-us">Language</rdfs:label>
+ <rdfs:comment xml:lang="en-us">A language of the intellectual
content of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Recommended best practice is to
use RFC 3066 [RFC3066],
+ which, in conjunction with ISO 639 [ISO639], defines two-
+ and three-letter primary language tags with optional
+ subtags. Examples include "en" or "eng" for
English,
+ "akk" for Akkadian, and "en-GB" for English
used in the
+ United Kingdom.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/member"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/publisher">
+ <rdfs:label xml:lang="en-us">Publisher</rdfs:label>
+ <rdfs:comment xml:lang="en-us">An entity responsible for making
the resource available</rdfs:comment>
+ <dc:description xml:lang="en-us">Examples of a Publisher include a
person, an organisation,
+ or a service.
+ Typically, the name of a Publisher should be used to
+ indicate the entity.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/relation">
+ <rdfs:label xml:lang="en-us">Relation</rdfs:label>
+ <dc:description xml:lang="en-us">
+ Recommended best practice is to reference the resource by means
+ of a string or number conforming to a formal identification
+ system.
+ </dc:description>
+ <rdfs:comment xml:lang="en-us">A reference to a related
resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/rights">
+ <rdfs:label xml:lang="en-us">Rights Management</rdfs:label>
+ <dc:description xml:lang="en-us">
+ Typically, a Rights element will contain a rights
+ management statement for the resource, or reference
+ a service providing such information. Rights information
+ often encompasses Intellectual Property Rights (IPR),
+ Copyright, and various Property Rights.
+ If the Rights element is absent, no assumptions can be made
+ about the status of these and other rights with respect to
+ the resource.
+ </dc:description>
+ <rdfs:comment xml:lang="en-us">Information about rights held in
and over the resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/source">
+ <rdfs:label xml:lang="en-us">Source</rdfs:label>
+ <rdfs:comment xml:lang="en-us">A reference to a resource from
which the present resource
+ is derived.</rdfs:comment>
+ <dc:description xml:lang="en-us">The present resource may be
derived from the Source resource
+ in whole or in part. Recommended best practice is to reference
+ the resource by means of a string or number conforming to a
+ formal identification system.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/subject">
+ <rdfs:label xml:lang="en-us">Subject and Keywords</rdfs:label>
+ <rdfs:comment xml:lang="en-us">The topic of the content of the
resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Typically, a Subject will be
expressed as keywords,
+ key phrases or classification codes that describe a topic
+ of the resource. Recommended best practice is to select
+ a value from a controlled vocabulary or formal
+ classification scheme.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/title">
+ <rdfs:label xml:lang="en-us">Title</rdfs:label>
+ <dc:description xml:lang="en-us">
+ Typically, a Title will be a name by which the resource is
+ formally known.
+ </dc:description>
+ <rdfs:comment xml:lang="en-us">A name given to the
resource.</rdfs:comment>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.org/dc/elements/1.1/type">
+ <rdfs:label xml:lang="en-us">Resource Type</rdfs:label>
+ <rdfs:comment xml:lang="en-us">The nature or genre of the content
of the resource.</rdfs:comment>
+ <dc:description xml:lang="en-us">Type includes terms describing
general categories, functions,
+ genres, or aggregation levels for content. Recommended best
+ practice is to select a value from a controlled vocabulary
+ (for example, the DCMI Type Vocabulary [DCMITYPE]). To
+ describe the physical or digital manifestation of the
+ resource, use the Format element.</dc:description>
+ <rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">shorthand</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#isDefinedBy"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2002/07/owl#versionInfo"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://xmlns.com/foaf/0.1/homepage"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/page"/>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
+ <rdfs:label xml:lang="en">part of</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">Everything is part of itself. Any
part of any part of a thing is itself part of that thing. Two distinct
things cannot be part of each other.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Occurrents are not subject to
change and so parthood between occurrents holds for all the times that the
part exists. Many continuants are subject to change, so parthood between
continuants will only hold at certain times, but this is difficult to
specify in OWL. See
https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Parthood requires the part and the
whole to have compatible classes: only an occurrent can be part of an
occurrent; only a process can be part of a process; only a continuant can
be part of a continuant; only an independent continuant can be part of an
independent continuant; only an immaterial entity can be part of an
immaterial entity; only a specifically dependent continuant can be part of
a specifically dependent continuant; only a generically dependent
continuant can be part of a generically dependent continuant. (This list is
not exhaustive.)
+
+A continuant cannot be part of an occurrent: use 'participates
in'. An occurrent cannot be part of a continuant: use 'has
participant'. A material entity cannot be part of an immaterial
entity: use 'has location'. A specifically dependent continuant
cannot be part of an independent continuant: use 'inheres in'. An
independent continuant cannot be part of a specifically dependent
continuant: use 'bearer of'.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">a core relation that holds between
a part and its whole</obo:IAO_0000115>
+
<rdfs:seeAlso>http://www.obofoundry.org/ro/#OBO_REL:part_of</rdfs:seeAlso>
+ <obo:IAO_0000111 xml:lang="en">is part of</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">my brain is part of my body
(continuant parthood, two material entities)</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">my stomach cavity is part of my
stomach (continuant parthood, immaterial entity is part of material
entity)</obo:IAO_0000112>
+ <obo:IAO_0000118 xml:lang="en">part_of</obo:IAO_0000118>
+ <obo:IAO_0000112 xml:lang="en">this day is part of this year
(occurrent parthood)</obo:IAO_0000112>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
+ <obo:RO_0001900
rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
+ <rdfs:label xml:lang="en">has part</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">Everything has itself as a part.
Any part of any part of a thing is itself part of that thing. Two distinct
things cannot have each other as a part.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Occurrents are not subject to
change and so parthood between occurrents holds for all the times that the
part exists. Many continuants are subject to change, so parthood between
continuants will only hold at certain times, but this is difficult to
specify in OWL. See
https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Parthood requires the part and the
whole to have compatible classes: only an occurrent have an occurrent as
part; only a process can have a process as part; only a continuant can have
a continuant as part; only an independent continuant can have an
independent continuant as part; only a specifically dependent continuant
can have a specifically dependent continuant as part; only a generically
dependent continuant can have a generically dependent continuant as part.
(This list is not exhaustive.)
+
+A continuant cannot have an occurrent as part: use 'participates
in'. An occurrent cannot have a continuant as part: use 'has
participant'. An immaterial entity cannot have a material entity as
part: use 'location of'. An independent continuant cannot have a
specifically dependent continuant as part: use 'bearer of'. A
specifically dependent continuant cannot have an independent continuant as
part: use 'inheres in'.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">a core relation that holds between
a whole and its part</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">has part</obo:IAO_0000111>
+ <obo:IAO_0000118 xml:lang="en">has_part</obo:IAO_0000118>
+ <obo:IAO_0000112 xml:lang="en">my body has part my brain
(continuant parthood, two material entities)</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">my stomach has part my stomach
cavity (continuant parthood, material entity has part immaterial
entity)</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this year has part this day
(occurrent parthood)</obo:IAO_0000112>
+ <obo:RO_0001900
rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000054">
+ <rdfs:label xml:lang="en">realized in</rdfs:label>
+ <rdfs:comment>Paraphrase of elucidation: a relation between a
realizable entity and a process, where there is some material entity that
is bearer of the realizable entity and participates in the process, and the
realizable entity comes to be realized in the course of the
process</rdfs:comment>
+ <obo:IAO_0000600 xml:lang="en">[copied from inverse property
'realizes'] to say that b realizes c at t is to assert that there
is some material entity d & b is a process which has participant d at t
& c is a disposition or role of which d is bearer_of at t& the type
instantiated by b is correlated with the type instantiated by c. (axiom
label in BFO2 Reference: [059-003])</obo:IAO_0000600>
+ <obo:IAO_0000118 xml:lang="en">is realized by</obo:IAO_0000118>
+ <obo:IAO_0000111 xml:lang="en">realized in</obo:IAO_0000111>
+ <obo:IAO_0000118 xml:lang="en">realized_in</obo:IAO_0000118>
+ <obo:IAO_0000112 xml:lang="en">this disease is realized in this
disease course</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this fragility is realized in this
shattering</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this investigator role is realized
in this investigation</obo:IAO_0000112>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000055">
+ <rdfs:label xml:lang="en">realizes</rdfs:label>
+ <rdfs:comment>Paraphrase of elucidation: a relation between a
process and a realizable entity, where there is some material entity that
is bearer of the realizable entity and participates in the process, and the
realizable entity comes to be realized in the course of the
process</rdfs:comment>
+ <obo:IAO_0000111 xml:lang="en">realizes</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">this disease course realizes this
disease</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this investigation realizes this
investigator role</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">this shattering realizes this
fragility</obo:IAO_0000112>
+ <obo:IAO_0000600 xml:lang="en">to say that b realizes c at t is to
assert that there is some material entity d & b is a process which has
participant d at t & c is a disposition or role of which d is bearer_of
at t& the type instantiated by b is correlated with the type
instantiated by c. (axiom label in BFO2 Reference:
[059-003])</obo:IAO_0000600>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000066">
+ <rdfs:label xml:lang="en">occurs in</rdfs:label>
+ <rdfs:comment>Paraphrase of definition: a relation between a
process and an independent continuant, in which the process takes place
entirely within the independent continuant</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">b occurs_in c =def b is a process
and c is a material entity or immaterial entity& there exists a
spatiotemporal region r and b occupies_spatiotemporal_region r.&
forall(t) if b exists_at t then c exists_at t & there exist spatial
regions s and s’ where & b spatially_projects_onto s at t& c is
occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at
t</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">occurs in</obo:IAO_0000111>
+ <obo:IAO_0000118 xml:lang="en">occurs_in</obo:IAO_0000118>
+ <obo:IAO_0000118 xml:lang="en">unfolds in</obo:IAO_0000118>
+ <obo:IAO_0000118 xml:lang="en">unfolds_in</obo:IAO_0000118>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000067"/>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
+ <owl:propertyChainAxiom rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
+ </owl:propertyChainAxiom>
+ <owl:propertyChainAxiom rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ </owl:propertyChainAxiom>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000067">
+ <rdfs:label xml:lang="en">contains process</rdfs:label>
+ <rdfs:comment>Paraphrase of definition: a relation between an
independent continuant and a process, in which the process takes place
entirely within the independent continuant</rdfs:comment>
+ <obo:IAO_0000115 xml:lang="en">[copied from inverse property
'occurs in'] b occurs_in c =def b is a process and c is a
material entity or immaterial entity& there exists a spatiotemporal
region r and b occupies_spatiotemporal_region r.& forall(t) if b
exists_at t then c exists_at t & there exist spatial regions s and s’
where & b spatially_projects_onto s at t& c is
occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at
t</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">site of</obo:IAO_0000111>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000039">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
+ <rdfs:label xml:lang="en">has measurement unit label</rdfs:label>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000135">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_specifically
denotes</rdfs:label>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">8/6/2009 Alan
Ruttenberg: The suggestions is to deprecate specific and generically
denotes in favor of a single denote relationship that corresponds to the
generic sense</obo:IAO_0000116>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Smith, Ceusters,
Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
+ <obo:IAO_0000112
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The process of
creation is, for example, writing down on paper the name of a friend by
deliberately creating a certain pattern using ink.
+
+Here the ink + paper is the independent continuant and the carrier is the
pattern in the ink.
+
+c = pattern in the ink
+b = paper + ink
+r = friend</obo:IAO_0000112>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">c specifically
denotes r =def
+r is a portion of reality
+& c is a particular quality
+& c depends specifically on some independent continuant b
+& b acquired c as the result of the achievement of an objective to
enable pointing to r repeatedly.
+
+Marked means there is a changed or additional quality of the bearer - the
quality is the information carrier.
+
+Case 1
+Memory trace as mark created when reading some description of some friend.
The trace can denote.
***The diff for this file has been truncated for email.***
=======================================
--- /dev/null
+++ /releases/2015-02-23/ontology/IAO.owl Mon Feb 23 23:43:12 2015 UTC
@@ -0,0 +1,102 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/"
+ xml:base="http://purl.obolibrary.org/obo/"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/iao.owl">
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An information
artifact is, loosely, a dependent continuant or its bearer that is created
as the result of one or more intentional processes. Examples: uniprot, the
english language, the contents of this document or a printout of it, the
temperature measurements from a weather balloon. For more information, see
the project home page at
http://code.google.com/p/information-artifact-ontology/</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IDs allocated to
related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS:
IAO_0021000-IAO_0021999</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IDs allocated to
subdomains of IAO. pno.owl: IAO_0020000-IAO_0020999, d-acts.owl:
IAO_0021000-IAO_0021999</rdfs:comment>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This is a
transitional artifact for discussion, not to be used for
production</rdfs:comment>
+ <protege:defaultLanguage
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">en</protege:defaultLanguage>
+ <owl:versionInfo xml:lang="en">$Revision$</owl:versionInfo>
+ <rdfs:seeAlso
rdf:resource="http://code.google.com/p/information-artifact-ontology/"/>
+ <dc:contributor xml:lang="en">Adam Goldstein</dc:contributor>
+ <dc:contributor xml:lang="en">Alan Ruttenberg</dc:contributor>
+ <dc:contributor xml:lang="en">Albert Goldfain</dc:contributor>
+ <dc:contributor xml:lang="en">Barry Smith</dc:contributor>
+ <dc:contributor xml:lang="en">Bjoern Peters</dc:contributor>
+ <dc:contributor xml:lang="en">Carlo Torniai</dc:contributor>
+ <dc:contributor xml:lang="en">Chris Mungall</dc:contributor>
+ <dc:contributor xml:lang="en">Chris Stoeckert</dc:contributor>
+ <dc:contributor xml:lang="en">Christian A. Boelling</dc:contributor>
+ <dc:contributor xml:lang="en">Darren Natale</dc:contributor>
+ <dc:contributor xml:lang="en">David Osumi-Sutherland</dc:contributor>
+ <dc:contributor xml:lang="en">Gwen Frishkoff</dc:contributor>
+ <dc:contributor xml:lang="en">Holger Stenzhorn</dc:contributor>
+ <dc:contributor xml:lang="en">James A. Overton</dc:contributor>
+ <dc:contributor xml:lang="en">James Malone</dc:contributor>
+ <dc:contributor xml:lang="en">Jennifer Fostel</dc:contributor>
+ <dc:contributor xml:lang="en">Jie Zheng</dc:contributor>
+ <dc:contributor xml:lang="en">Jonathan Rees</dc:contributor>
+ <dc:contributor xml:lang="en">Larisa Soldatova</dc:contributor>
+ <dc:contributor xml:lang="en">Lawrence Hunter</dc:contributor>
+ <dc:contributor xml:lang="en">Mathias Brochhausen</dc:contributor>
+ <dc:contributor xml:lang="en">Matt Brush</dc:contributor>
+ <dc:contributor xml:lang="en">Melanie Courtot</dc:contributor>
+ <dc:contributor xml:lang="en">Michel Dumontier</dc:contributor>
+ <dc:contributor xml:lang="en">Yongqun (Oliver) He</dc:contributor>
+ <dc:contributor xml:lang="en">Paolo Ciccarese</dc:contributor>
+ <dc:contributor xml:lang="en">Pat Hayes</dc:contributor>
+ <dc:contributor xml:lang="en">Philippe Rocca-Serra</dc:contributor>
+ <dc:contributor xml:lang="en">Randy Dipert</dc:contributor>
+ <dc:contributor xml:lang="en">Ron Rudnicki</dc:contributor>
+ <dc:contributor xml:lang="en">Satya Sahoo</dc:contributor>
+ <dc:contributor xml:lang="en">Sivaram Arabandi</dc:contributor>
+ <dc:contributor xml:lang="en">Werner Ceusters</dc:contributor>
+ <dc:contributor xml:lang="en">William Duncan</dc:contributor>
+ <dc:contributor xml:lang="en">William Hogan</dc:contributor>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/bfo/2014-05-03/classes-only.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2015-02-11/core.owl"/>
+ <owl:imports
rdf:resource="http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/dev/iao-main.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/dev/import-OBO.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/dev/externalByHand.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/dev/ontology-metadata.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/dev/obsolete.owl"/>
+ </owl:Ontology>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:Thing
rdf:about="http://code.google.com/p/information-artifact-ontology/"/>
+
+
+
+ 
+
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/iao/pno.owl">
+ <IAO_0000603
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IAO_0020000-IAO_0020999</IAO_0000603>
+ </rdf:Description>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/iao/d-acts.owl">
+ <IAO_0000603
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IAO_0021000-IAO_0021999</IAO_0000603>
+ </rdf:Description>
+</rdf:RDF>
+
+
+
+
+
=======================================
--- /dev/null
+++ /releases/2015-02-23/ontology/externalByHand.owl Mon Feb 23 23:43:12
2015 UTC
@@ -0,0 +1,94 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/"
+ xml:base="http://purl.obolibrary.org/obo/"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:swrl="http://www.w3.org/2003/11/swrl#"
+ xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/iao/dev/externalByHand.owl"/>
+
+
+ 
+
+
+
+
+ 
+
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/OBI_0000293">
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/OBI_0000299">
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/OBI_0000312">
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
+
+
+
+</rdf:RDF>
+
+
+
+
+
=======================================
--- /dev/null
+++ /releases/2015-02-23/ontology/iao-main.owl Mon Feb 23 23:43:12 2015 UTC
@@ -0,0 +1,2681 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/iao/dev/iao-main.owl#"
+ xml:base="http://purl.obolibrary.org/obo/iao/dev/iao-main.owl"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:xsp="http://www.owl-ontologies.com/2005/08/07/xsp.owl#"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:swrl="http://www.w3.org/2003/11/swrl#"
+ xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/iao/dev/iao-main.owl">
+ <protege:defaultLanguage
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">en</protege:defaultLanguage>
+ <rdfs:comment xml:lang="en">An information artifact is, loosely, a
dependent continuant or its bearer that is created as the result of one or
more intentional processes. Examples: uniprot, the english language, the
contents of this document or a printout of it, the temperature measurements
from a weather balloon. For more information, see the project home page at
http://code.google.com/p/information-artifact-ontology/</rdfs:comment>
+ <rdfs:seeAlso
rdf:resource="http://code.google.com/p/information-artifact-ontology/"/>
+ <dc:contributor xml:lang="en">Adam Goldstein</dc:contributor>
+ <dc:contributor xml:lang="en">Alan Ruttenberg</dc:contributor>
+ <dc:contributor xml:lang="en">Albert Goldfain</dc:contributor>
+ <dc:contributor xml:lang="en">Barry Smith</dc:contributor>
+ <dc:contributor xml:lang="en">Bjoern Peters</dc:contributor>
+ <dc:contributor xml:lang="en">Carlo Torniai</dc:contributor>
+ <dc:contributor xml:lang="en">Chris Mungall</dc:contributor>
+ <dc:contributor xml:lang="en">Chris Stoeckert</dc:contributor>
+ <dc:contributor xml:lang="en">Christian A. Boelling</dc:contributor>
+ <dc:contributor xml:lang="en">Darren Natale</dc:contributor>
+ <dc:contributor xml:lang="en">David Osumi-Sutherland</dc:contributor>
+ <dc:contributor xml:lang="en">Gwen Frishkoff</dc:contributor>
+ <dc:contributor xml:lang="en">Holger Stenzhorn</dc:contributor>
+ <dc:contributor xml:lang="en">James A. Overton</dc:contributor>
+ <dc:contributor xml:lang="en">James Malone</dc:contributor>
+ <dc:contributor xml:lang="en">Jennifer Fostel</dc:contributor>
+ <dc:contributor xml:lang="en">Jie Zheng</dc:contributor>
+ <dc:contributor xml:lang="en">Jonathan Rees</dc:contributor>
+ <dc:contributor xml:lang="en">Larisa Soldatova</dc:contributor>
+ <dc:contributor xml:lang="en">Lawrence Hunter</dc:contributor>
+ <dc:contributor xml:lang="en">Mathias Brochhausen</dc:contributor>
+ <dc:contributor xml:lang="en">Matt Brush</dc:contributor>
+ <dc:contributor xml:lang="en">Melanie Courtot</dc:contributor>
+ <dc:contributor xml:lang="en">Michel Dumontier</dc:contributor>
+ <dc:contributor xml:lang="en">Yongqun (Oliver) He</dc:contributor>
+ <dc:contributor xml:lang="en">Paolo Ciccarese</dc:contributor>
+ <dc:contributor xml:lang="en">Pat Hayes</dc:contributor>
+ <dc:contributor xml:lang="en">Philippe Rocca-Serra</dc:contributor>
+ <dc:contributor xml:lang="en">Randy Dipert</dc:contributor>
+ <dc:contributor xml:lang="en">Ron Rudnicki</dc:contributor>
+ <dc:contributor xml:lang="en">Satya Sahoo</dc:contributor>
+ <dc:contributor xml:lang="en">Sivaram Arabandi</dc:contributor>
+ <dc:contributor xml:lang="en">Werner Ceusters</dc:contributor>
+ <dc:contributor xml:lang="en">William Duncan</dc:contributor>
+ <dc:contributor xml:lang="en">William Hogan</dc:contributor>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/bfo/2014-05-03/classes-only.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2015-02-11/core.owl"/>
+ <owl:imports
rdf:resource="http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/dev/import-OBO.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/dev/externalByHand.owl"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/dev/ontology-metadata.owl"/>
+ </owl:Ontology>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
+ <rdfs:label xml:lang="en">editor preferred term</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000113">
+ <rdfs:label xml:lang="en">in branch</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
+ <rdfs:label xml:lang="en">has curation status</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
+ <rdfs:label xml:lang="en">definition</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
+ <rdfs:label xml:lang="en">editor note</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
+ <rdfs:label xml:lang="en">term editor</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
+ <rdfs:label xml:lang="en">alternative term</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
+ <rdfs:label xml:lang="en">definition source</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000231">
+ <rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
+ <rdfs:label xml:lang="en">imported from</rdfs:label>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000604">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">retired from use as
of</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In OWL 2 add
AnnotationPropertyRange xsd:dateTimeStamp</obo:IAO_0000116>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relates a class of
CRID to the date after which further instances should not be made,
according to the central authority</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">retired from use as
of</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://www.w3.org/2002/07/owl#versionInfo"/>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000039">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
+ <rdfs:label xml:lang="en">has measurement unit label</rdfs:label>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000136">
+ <rdfs:label xml:lang="en">is about</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. Following
discussion with Jonathan Rees, and introduction of "mentions"
relation. Weaken the is_about relationship to be primitive.
+
+We will try to build it back up by elaborating the various subproperties
that are more precisely defined.
+
+Some currently missing phenomena that should be considered
"about" are predications - "The only person who knows the
answer is sitting beside me" , Allegory, Satire, and other literary
forms that can be topical without explicitly mentioning the
topic.</obo:IAO_0000116>
+ <obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000
years of philosophy</obo:IAO_0000119>
+ <obo:IAO_0000112 xml:lang="en">This document is about information
artifacts and their representations</obo:IAO_0000112>
+ <obo:IAO_0000115 xml:lang="en">is_about is a (currently) primitive
relation that relates an information artifact to an
entity.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000142">
+ <rdfs:label xml:lang="en">mentions</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. P4 RC1
munges our GCI so remove it for now: mentions some entity equivalentTo
has_part some ('generically denotes' some
entity)</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg: Add this
relation following conversation with Jonathan Rees that N&S GCI for
is_about was too strong. Really it was simply sufficient. To effect this
change we introduce this relation, which is subproperty of is_about, and
have previous GCI use this relation "mentions" in it's
(logical) definition</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">An information artifact IA mentions
an entity E exactly when it has a component/part that denotes
E</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Jonathan
Rees</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">Person: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000219">
+ <rdfs:label xml:lang="en">denotes</rdfs:label>
+ <rdfs:comment xml:lang="en"></rdfs:comment>
+ <obo:IAO_0000116 xml:lang="en">2009-11-10 Alan Ruttenberg. Old
definition said the following to emphasize the generic nature of this
relation. We no longer have 'specifically denotes', which would
have been primitive, so make this relation primitive.
+g denotes r =def
+r is a portion of reality
+there is some c that is a concretization of g
+every c that is a concretization of g specifically denotes
r</obo:IAO_0000116>
+ <obo:IAO_0000112 xml:lang="en">A person's name denotes the
person. A variable name in a computer program denotes some piece of memory.
Lexically equivalent strings can denote different things, for instance
"Alan" can denote different people. In each case of use, there is
a case of the denotation relation obtaining, between "Alan" and
the person that is being named.</obo:IAO_0000112>
+ <obo:IAO_0000119 xml:lang="en">Conversations with Barry Smith,
Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James
Malone, Bill Hogan</obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">denotes is a primitive,
instance-level, relation obtaining between an information content entity
and some portion of reality. Denotation is what happens when someone
creates an information content entity E in order to specifically refer to
something. The only relation between E and the thing is that E can be used
to 'pick out' the thing. This relation connects those two
together. Freedictionary.com sense 3: To signify directly; refer to
specifically</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000221">
+ <rdfs:label xml:lang="en">is quality measurement of</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">8/6/2009 Alan Ruttenberg: The
strategy is to be rather specific with this relationship. There are other
kinds of measurements that are not of qualities, such as those that measure
time. We will add these as separate properties for the moment and see about
generalizing later</obo:IAO_0000116>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116 xml:lang="en">From the second IAO workshop [Alan
Ruttenberg 8/6/2009: not completely current, though bringing in comparison
is probably important]
+
+This one is the one we are struggling with at the moment. The issue is
what a measurement measures. On the one hand saying that it measures the
quality would include it "measuring" the bearer = referring to
the bearer in the measurement. However this makes comparisons of two
different things not possible. On the other hand not having it inhere in
the bearer, on the face of it, breaks the audit trail.
+
+Werner suggests a solution based on "Magnitudes" a proposal for
which we are awaiting details.
+--
+From the second IAO workshop, various comments, [commented on by Alan
Ruttenberg 8/6/2009]
+
+unit of measure is a quality, e.g. the length of a ruler.
+
+[We decided to hedge on what units of measure are, instead talking about
measurement unit labels, which are the information content entities that
are about whatever measurement units are. For IAO we need that information
entity in any case. See the term measurement unit label]
+
+[Some struggling with the various subflavors of is_about. We subsequently
removed the relation represents, and describes until and only when we have
a better theory]
+
+a represents b means either a denotes b or a describes
+
+describe:
+a describes b means a is about b and a allows an inference of at least one
quality of b
+
+We have had a long discussion about denotes versus
describes.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">From the second IAO workshop: An
attempt at tieing the quality to the measurement datum more carefully.
+
+a is a magnitude means a is a determinate quality particular inhering in
some bearer b existing at a time t that can be represented/denoted by an
information content entity e that has parts denoting a unit of measure, a
number, and b. The unit of measure is an instance of the determinable
quality.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">From the second meeting on IAO:
+
+An attempt at defining assay using Barry's "reliability"
wording
+
+assay:
+process and has_input some material entity
+and has_output some information content entity
+and which is such that instances of this process type reliably generate
+outputs that describes the input.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">This one is the one we are
struggling with at the moment. The issue is what a measurement measures. On
the one hand saying that it measures the quality would include it
"measuring" the bearer = referring to the bearer in the
measurement. However this makes comparisons of two different things not
possible. On the other hand not having it inhere in the bearer, on the face
of it, breaks the audit trail.
+
+Werner suggests a solution based on "Magnitudes" a proposal for
which we are awaiting details.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">m is a quality measurement of q at
t when
+q is a quality
+there is a measurement process p that has specified output m, a
measurement datum, that is about q</obo:IAO_0000115>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000407">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
+ <rdfs:label xml:lang="en">has coordinate unit label</rdfs:label>
+ <rdfs:comment xml:lang="en">relating a cartesian spatial
coordinate datum to a unit label that together with the values represent a
point</rdfs:comment>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/UO_0000001"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000413">
+ <rdfs:label xml:lang="en">is duration of</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">relates a process to a
time-measurement-datum that represents the duration of the
process</obo:IAO_0000115>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000416"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000417">
+ <rdfs:label xml:lang="en">is quality measured as</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">2009/10/19 Alan Ruttenberg. Named
'junk' relation useful in restrictions, but not a real instance
relationship</obo:IAO_0000116>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">inverse of the relation of is
quality measurement of</obo:IAO_0000115>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000221"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000418">
+ <rdfs:label xml:lang="en">is quality specification of</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">Person:Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">a relation between a data item and
a quality of a material entity where the material entity is the specified
output of a material transformation which achieves an objective
specification that indicates the intended value of the specified
quality.</obo:IAO_0000115>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000419">
+ <rdfs:label xml:lang="en">quality is specified as</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">2009/10/19 Alan Ruttenberg. Named
'junk' relation useful in restrictions, but not a real instance
relationship</obo:IAO_0000116>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">Person:Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">inverse of the relation of is
quality specification of</obo:IAO_0000115>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000418"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000581">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
+ <rdfs:label xml:lang="en">has time stamp</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">relates a time stamped measurement
datum to the time measurement datum that denotes the time when the
measurement was taken</obo:IAO_0000115>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
+ <rdfs:range
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000416"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000582"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000583">
+ <rdfs:label xml:lang="en">has measurement datum</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">relates a time stamped measurement
datum to the measurement datum that was measured</obo:IAO_0000115>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000582"/>
+ <rdfs:range>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000109"/>
+ <owl:Class>
+ <owl:complementOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000416"/>
+ </owl:Class>
+ </owl:intersectionOf>
+ </owl:Class>
+ </rdfs:range>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/OBI_0000293"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/OBI_0000299"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/RO_0000053"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/RO_0000058"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/RO_0000059"/>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:DatatypeProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000004">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
+ <rdfs:label xml:lang="en">has measurement value</rdfs:label>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000032"/>
+ <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/>
+ </owl:DatatypeProperty>
+
+
+
+ 
+
+ <owl:DatatypeProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000404">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
+ <rdfs:label xml:lang="en">has x coordinate value</rdfs:label>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
+ <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/>
+ </owl:DatatypeProperty>
+
+
+
+ 
+
+ <owl:DatatypeProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000405">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
+ <rdfs:label xml:lang="en">has z coordinate value</rdfs:label>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
+ <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/>
+ </owl:DatatypeProperty>
+
+
+
+ 
+
+ <owl:DatatypeProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000406">
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
+ <rdfs:label xml:lang="en">has y coordinate value</rdfs:label>
+ <rdfs:domain
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
+ <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/>
+ </owl:DatatypeProperty>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000001"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000009"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000018"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000023"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000026"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000028"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GAZ_00000448"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000001">
+ <rdfs:label xml:lang="en">conditional specification</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
+ <obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000349</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess
Branch</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">a directive information entity that
specifies what should happen if the trigger condition is
fulfilled</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">conditional
specification</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000003">
+ <rdfs:label xml:lang="en">measurement unit label</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000009"/>
+ <obo:IAO_0000116 xml:lang="en">2009-03-16: provenance: a term
measurement unit was
+proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and
+Cristian Cocos, and subsequently moved to IAO where the objective for
+which the original term was defined was satisfied with the definition
+of this, different, term.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">2009-03-16: review of this term
done during during the OBI workshop winter 2009 and the current definition
was considered acceptable for use in OBI. If there is a need to modify this
definition please notify OBI.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">A measurement unit label is as a
label that is part of a scalar measurement datum and denotes a unit of
measure.</obo:IAO_0000115>
+ <obo:IAO_0000112 xml:lang="en">Examples of measurement unit labels
are liters, inches, weight per volume.</obo:IAO_0000112>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">measurement unit
label</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000005">
+ <rdfs:label xml:lang="en">objective specification</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
+ <obo:IAO_0000116 xml:lang="en">2009-03-16: original definition
when imported from OBI read: "objective is an non realizable
information entity which can serve as that proper part of a plan towards
which the realization of the plan is directed."</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">2014-03-31: In the example of usage
("In the protocol of a ChIP assay the objective specification says to
identify protein and DNA interaction") there is a protocol which is
the ChIP assay protocol. In addition to being concretized on paper, the
protocol can be concretized as a realizable entity, such as a plan that
inheres in a person. The objective specification is the part that says that
some protein and DNA interactions are identified. This is a specification
of a process endpoint: the boundary in the process before which they are
not identified and after which they are. During the realization of the
plan, the goal is to get to the point of having the interactions, and
participants in the realization of the plan try to do
that.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">Answers the question, why did you
do this experiment?</obo:IAO_0000116>
+ <obo:IAO_0000112 xml:lang="en">In the protocol of a ChIP assay the
objective specification says to identify protein and DNA
interaction.</obo:IAO_0000112>
+ <obo:IAO_0000119 xml:lang="en">OBI Plan and Planned Process/Roles
Branch</obo:IAO_0000119>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000217</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Barry
Smith</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Jennifer
Fostel</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">a directive information entity that
describes an intended process endpoint. When part of a plan specification
the concretization is realized in a planned process in which the bearer
tries to effect the world so that the process endpoint is
achieved.</obo:IAO_0000115>
+ <obo:IAO_0000118 xml:lang="en">goal specification</obo:IAO_0000118>
+ <obo:IAO_0000111 xml:lang="en">objective
specification</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000006">
+ <rdfs:label xml:lang="en">narrative object</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+ <obo:IAO_0000116 xml:lang="en">2009-08-10 Alan Ruttenberg: Larry
Hunter suggests that this be obsoleted and replaced by 'textual
entity' and 'figure'. Alan restored as there are OBI
dependencies and this merits further discussion</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">A narrative object is an
information content entity that is a set of propositions.</obo:IAO_0000115>
+ <obo:IAO_0000112 xml:lang="en">Examples of narrative objects are
reports, journal articles, and patents submission.</obo:IAO_0000112>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000013</obo:IAO_0000119>
+ <obo:IAO_0000116 xml:lang="en">agree - DENRIE. Issue(alan) do we
only mean text? What about a story told by mime. Does music count? (no)
what about an oral report. Regarding definition, saying it is a set of
propositions means we loose the idea that wording matters. Maybe adjust
saying a narrative object has some relationshop to a set of
propositions</obo:IAO_0000116>
+ <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">narrative object</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">person:Chris
Stoeckert</obo:IAO_0000117>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000007">
+ <rdfs:label xml:lang="en">action specification</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">OBI Plan and Planned Process
branch</obo:IAO_0000119>
+ <obo:IAO_0000112 xml:lang="en">Pour the contents of flask 1 into
flask 2</obo:IAO_0000112>
+ <obo:IAO_0000115 xml:lang="en">a directive information entity that
describes an action the bearer will take</obo:IAO_0000115>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000009">
+ <rdfs:label xml:lang="en">datum label</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+ <obo:IAO_0000232>9/22/11 BP: changed the rdfs:label for this class
from 'label' to 'datum label' to convey that this class
is not intended to cover all kinds of labels (stickers, radiolabels, etc.),
and not even all kind of textual labels, but rather the kind of labels
occuring in a datum.
+</obo:IAO_0000232>
+ <obo:IAO_0000115 xml:lang="en">A label is a symbol that is part of
some other datum and is used to either partially define the denotation of
that datum or to provide a means for identifying the datum as a member of
the set of data with the same label</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">GROUP: IAO</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">datum label</obo:IAO_0000111>
+ <obo:IAO_0000116
xml:lang="en">http://www.golovchenko.org/cgi-bin/wnsearch?q=label#4n</obo:IAO_0000116>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000010">
+ <rdfs:label xml:lang="en">software</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
+ <obo:IAO_0000119 xml:lang="en">GROUP: OBI</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Chris
Stoeckert</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Software is a plan specification
composed of a series of instructions that can be
+interpreted by or directly executed by a processing unit.</obo:IAO_0000115>
+ <obo:IAO_0000116 xml:lang="en">see sourceforge tracker discussion
at
http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178</obo:IAO_0000116>
+ <obo:IAO_0000111 xml:lang="en">software</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000013">
+ <rdfs:label xml:lang="en">journal article</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000088"/>
+ <obo:IAO_0000112 xml:lang="en">Examples are articles published in
the journals, Nature and Science. The content can often be cited by
reference to a paper based encoding, e.g. Authors, Title of article,
Journal name, date or year of publication, volume and page
number.</obo:IAO_0000112>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000159</obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">a report that is published in a
journal</obo:IAO_0000115>
+ <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">journal article</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">person:Chris
Stoeckert</obo:IAO_0000117>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000015">
+ <rdfs:label xml:lang="en">information carrier</rdfs:label>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/BFO_0000019"/>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <obo:IAO_0000116 xml:lang="en">12/15/09: There is a concern that
some ways that carry information may be processes rather than qualities,
such as in a 'delayed wave carrier'.</obo:IAO_0000116>
+ <obo:IAO_0000116>2014-03-10: We are not certain that all
information carriers are qualities. There was a discussion of dropping
it.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">A quality of an information bearer
that imparts the information content</obo:IAO_0000115>
+ <obo:IAO_0000112 xml:lang="en">In the case of a printed paperback
novel the physicality of the ink and of the paper form part of the
information bearer. The qualities of appearing black and having a certain
pattern for the ink and appearing white for the paper form part of the
information carrier in this case.</obo:IAO_0000112>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000
years of philosophy</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">information
carrier</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000017">
+ <rdfs:label xml:lang="en">model number</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000028"/>
+ <obo:IAO_0000115 xml:lang="en">A model number is an information
content entity specifically borne by catalogs, design specifications,
advertising materials, inventory systems and similar that is about
manufactured objects of the same class. The model number is an alternative
term for the class. The manufactered objects may or may not also bear the
model number. Model numbers can be encoded in a variety of other
information objects, such as bar codes, numerals, or patterns of
dots.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Person: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116 xml:lang="en">manufactered items may have more
than one model number, sometimes by rebranding, or because companies are
sold and the products issued new model numbers</obo:IAO_0000116>
+ <obo:IAO_0000111 xml:lang="en">model number</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000025">
+ <rdfs:label xml:lang="en">programming language</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
+ <obo:IAO_0000115 xml:lang="en">A language in which source code is
written that is intended to be executed/run by a software interpreter.
Programming languages are ways to write instructions that specify what to
do, and sometimes, how to do it.</obo:IAO_0000115>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000058</obo:IAO_0000119>
+ <obo:IAO_0000112 xml:lang="en">R, Perl, Java</obo:IAO_0000112>
+ <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">person:Chris
Stoeckert</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">programming
language</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027">
+ <rdfs:label xml:lang="en">data item</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+ <obo:IAO_0000116 xml:lang="en">2/2/2009 Alan and Bjoern discussing
FACS run output data. This is a data item because it is about the cell
population. Each element records an event and is typically further composed
a set of measurment data items that record the fluorescent intensity
stimulated by one of the lasers.</obo:IAO_0000116>
+ <obo:IAO_0000116>2014-03-31: See discussion at
http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">2009-03-16: data item deliberatly
ambiguous: we merged data set and datum to be one entity, not knowing how
to define singular versus plural. So data item is more general than
datum.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">2009-03-16: removed datum as
alternative term as datum specifically refers to singular form, and is thus
not an exact synonym.</obo:IAO_0000116>
+ <obo:IAO_0000112 xml:lang="en">Data items include counts of
things, analyte concentrations, and statistical summaries.</obo:IAO_0000112>
+ <obo:IAO_0000116 xml:lang="en">JAR: datum -- well, this will
be very tricky to define, but maybe some
+information-like stuff that might be put into a computer and that is
+meant, by someone, to denote and/or to be interpreted by some
+process... I would include lists, tables, sentences... I think I might
+defer to Barry, or to Brian Cantwell Smith
+
+JAR: A data item is an approximately justified approximately true
approximate belief</obo:IAO_0000116>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Chris
Stoeckert</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Jonathan
Rees</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">a data item is an information
content entity that is intended to be a truthful statement about something
(modulo, e.g., measurement precision or other systematic errors) and is
constructed/acquired by a method which reliably tends to produce
(approximately) truthful statements.</obo:IAO_0000115>
+ <obo:IAO_0000118 xml:lang="en">data</obo:IAO_0000118>
+ <obo:IAO_0000111 xml:lang="en">data item</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000028">
+ <rdfs:label xml:lang="en">symbol</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+ <obo:IAO_0000116 xml:lang="en">20091104, MC: this needs work and
will most probably change</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">2014-03-31: We would like to have a
deeper analysis of 'mark' and 'sign' in the future (see
https://code.google.com/p/information-artifact-ontology/issues/detail?id=154).</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">An information content entity that
is a mark(s) or character(s) used as a conventional representation of
another entity.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON: James A.
Overton</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Jonathan
Rees</obo:IAO_0000117>
+ <obo:IAO_0000112 xml:lang="en">a serial number such as
"12324X"</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">a stop sign</obo:IAO_0000112>
+ <obo:IAO_0000112 xml:lang="en">a written proper name such as
"OBI"</obo:IAO_0000112>
+ <obo:IAO_0000119 xml:lang="en">based on Oxford English
Dictionary</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">symbol</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000029">
+ <rdfs:label xml:lang="en">numeral</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000028"/>
+ <obo:IAO_0000115 xml:lang="en">A symbol that denotes a
number.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Jonathan
Rees</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">numeral</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000030">
+ <rdfs:label xml:lang="en">information content entity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000116 xml:lang="en">2014-03-10: The use of
"thing" is intended to be general enough to include universals
and configurations (see
https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">A generically dependent continuant
that is about some thing.</obo:IAO_0000115>
+ <obo:IAO_0000112 xml:lang="en">Examples of information content
entites include journal articles, data, graphical layouts, and
graphs.</obo:IAO_0000112>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000142</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Chris
Stoeckert</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">information content
entity</obo:IAO_0000111>
+ <obo:IAO_0000116 xml:lang="en">information_content_entity
'is_encoded_in' some digital_entity in obi before split (040907).
information_content_entity 'is_encoded_in' some physical_document
in obi before split (040907).
+
+Previous. An information content entity is a non-realizable information
entity that 'is encoded in' some digital or physical
entity.</obo:IAO_0000116>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000031">
+ <rdfs:label xml:lang="en">integer numeral</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000029"/>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Jonathan
Rees</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">a numeral that denotes an
integer</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">integer numeral</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000032">
+ <rdfs:label xml:lang="en">scalar measurement datum</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000039"/>
+ <owl:minCardinality
rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</owl:minCardinality>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000004"/>
+ <owl:minCardinality
rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</owl:minCardinality>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000112 xml:lang="en">10 feet. 3 ml.</obo:IAO_0000112>
+ <obo:IAO_0000116 xml:lang="en">2009-03-16: we decided to keep
datum singular in scalar measurement datum, as in
+this case we explicitly refer to the singular form</obo:IAO_0000116>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000116 xml:lang="en">Would write this as: has_part some
'measurement unit label' and has_part some numeral and has_part
exactly 2, except for the fact that this won't let us take advantage
of OWL reasoning over the numbers. Instead use has measurment value
property to represent the same. Use has measurement unit label (subproperty
of has_part) so we can easily say that there is only one of
them.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">a scalar measurement datum is a
measurement datum that is composed of two parts, numerals and a unit
label.</obo:IAO_0000115>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000033">
+ <rdfs:label xml:lang="en">directive information entity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
+ <owl:someValuesFrom
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000116 xml:lang="en">2009-03-16: provenance: a term
realizable information entity was proposed for OBI (OBI_0000337) , edited
by the PlanAndPlannedProcess branch. Original definition was "is the
specification of a process that can be concretized and realized by an
actor" with alternative term "instruction".It has been
subsequently moved to IAO where the objective for which the original term
was defined was satisfied with the definitionof this, different,
term.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">2013-05-30 Alan Ruttenberg: What
differentiates a directive information entity from an information
concretization is that it can have concretizations that are either
qualities or realizable entities. The concretizations that are realizable
entities are created when an individual chooses to take up the direction,
i.e. has the intention to (try to) realize it.</obo:IAO_0000116>
+ <obo:IAO_0000116 xml:lang="en">8/6/2009 Alan Ruttenberg: Changed
label from "information entity about a realizable" after
discussions at ICBO</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">An information content entity whose
concretizations indicate to their bearer how to realize them in a
process.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000116 xml:lang="en">Werner pushed back on calling it
realizable information entity as it isn't realizable. However this
name isn't right either. An example would be a recipe. The realizable
entity would be a plan, but the information entity isn't about the
plan, it, once concretized, *is* the plan. -Alan</obo:IAO_0000116>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000034">
+ <rdfs:label xml:lang="en">time trigger</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000001"/>
+ <obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000331</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess
Branch</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">revisit?</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">time trigger</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000124"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000037">
+ <rdfs:label xml:lang="en">dot plot</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000038"/>
+ <obo:IAO_0000115 xml:lang="en">A dot plot is a report graph which
is a graphical representation of data where each data point is represented
by a single dot placed on coordinates corresponding to data point values in
particular dimensions.</obo:IAO_0000115>
+ <obo:IAO_0000112 xml:lang="en">Dot plot of SSC-H and
FSC-H.</obo:IAO_0000112>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000123</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">dot plot</obo:IAO_0000111>
+ <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">person:Allyson
Lister</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">person:Chris
Stoeckert</obo:IAO_0000117>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000002"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000038">
+ <rdfs:label xml:lang="en">graph</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000309"/>
+ <obo:IAO_0000115 xml:lang="en">A diagram that presents one or more
tuples of information by mapping those tuples in to a two dimensional space
in a non arbitrary way.</obo:IAO_0000115>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000240</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Lawrence
Hunter</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">graph</obo:IAO_0000111>
+ <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">person:Allyson
Lister</obo:IAO_0000117>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000055">
+ <rdfs:label xml:lang="en">rule</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000001"/>
+ <obo:IAO_0000116 xml:lang="en">MSI</obo:IAO_0000116>
+ <obo:IAO_0000119 xml:lang="en">OBI_0500021</obo:IAO_0000119>
+ <obo:IAO_0000119 xml:lang="en">PRS</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PRS</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">a rule is an executable which
guides, defines, restricts actions</obo:IAO_0000115>
+ <obo:IAO_0000112 xml:lang="en">example to be
added</obo:IAO_0000112>
+ <obo:IAO_0000111 xml:lang="en">rule</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
+ </owl:Class>
***The diff for this file has been truncated for email.***
=======================================
--- /dev/null
+++ /releases/2015-02-23/ontology/import-OBO.owl Mon Feb 23 23:43:12 2015
UTC
@@ -0,0 +1,373 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/iao/dev/import-OBO.owl#"
+ xml:base="http://purl.obolibrary.org/obo/iao/dev/import-OBO.owl"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/iao/dev/import-OBO.owl"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</rdfs:label>
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">textual
definition</rdfs:label>
+ <rdfs:label>definition</rdfs:label>
+ <rdfs:label xml:lang="en">definition</rdfs:label>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</obo:IAO_0000111>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">textual
definition</obo:IAO_0000111>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The official OBI definition,
explaining the meaning of a class or property. Shall be Aristotelian,
formalized and normalized. Can be augmented with colloquial
definitions.</obo:IAO_0000115>
+ <obo:IAO_0000115 xml:lang="en">The official definition, explaining
the meaning of a class or property. Shall be Aristotelian, formalized and
normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
+ <obo:IAO_0000111>definition</obo:IAO_0000111>
+ <obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
+ <rdfs:label xml:lang="en">editor note</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An administrative note intended for
its editor. It may not be included in the publication version of the
ontology, so it should contain nothing necessary for end users to
understand the ontology.</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
+ <rdfs:label xml:lang="en">imported from</rdfs:label>
+ </owl:AnnotationProperty>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
+ <rdfs:label xml:lang="en">has curation status</rdfs:label>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has curation
status</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
+ <rdfs:label xml:lang="en">definition source</rdfs:label>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Discussion on
obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
+ <obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in
external database to indicate / attribute source(s) for the definition.
Free text indicate / attribute source(s) for the definition. EXAMPLE:
Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on
31.01.2007</obo:IAO_0000115>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
+ <rdfs:label xml:lang="en">term editor</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term
editor and definition modified accordingly. See
http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">Name of editor entering the term in
the file. The term editor is a point of contact for information regarding
the term. The term editor may be, but is not always, the author of the
definition, which may have been worked upon by several
people</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
+ <rdfs:label xml:lang="en">editor preferred label</rdfs:label>
+ <rdfs:label>editor preferred term</rdfs:label>
+ <rdfs:label xml:lang="en">editor preferred term</rdfs:label>
+ <obo:IAO_0000111>editor preferred term</obo:IAO_0000111>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The concise, meaningful, and
human-friendly name for a class or property preferred by the ontology
developers. (US-English)</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
label</obo:IAO_0000111>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
term</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
+ <rdfs:label xml:lang="en">example of usage</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A phrase describing how a class
name should be used. May also include other kinds of examples that
facilitate immediate understanding of a class semantics, such as widely
known prototypical subclasses or instances of the class. Although essential
for high level terms, examples for low level terms (e.g., Affymetrix HU133
array) are not</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">example of usage</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/OBI_0000293">
+ <rdfs:label xml:lang="en">has_specified_input</rdfs:label>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">8/17/09: specified
inputs of one process are not necessarily specified inputs of a larger
process that it is part of. This is in contrast to how 'has
participant' works.</obo:IAO_0000116>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PERSON: Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PERSON: Larry
Hunter</obo:IAO_0000117>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PERSON: Melanie
Coutot</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A relation between a planned
process and a continuant participating in that process that is not created
during the process. The presence of the continuant during the process is
explicitly specified in the plan specification which the process realizes
the concretization of.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111
xml:lang="en">has_specified_input</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">see is_input_of
example_of_usage</obo:IAO_0000112>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/OBI_0000299">
+ <rdfs:label xml:lang="en">has_specified_output</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PERSON: Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PERSON: Larry
Hunter</obo:IAO_0000117>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PERSON: Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A relation between a planned
process and a continuant participating in that process. The presence of the
continuant at the end of the process is explicitly specified in the
objective specification which the process realizes the concretization
of.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111
xml:lang="en">has_specified_output</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <owl:inverseOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/OBI_0000312">
+ <rdfs:label xml:lang="en">is_specified_output_of</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PERSON:Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A relation between a planned
process and a continuant participating in that process. The presence of the
continuant at the end of the process is explicitly specified in the
objective specification which the process realizes the concretization
of.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111
xml:lang="en">is_specified_output_of</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdfs:subPropertyOf
rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/RO_0000056"/>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/RO_0000057"/>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000019"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000029"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/GAZ_00000448">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">geographic
location</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A reference to a
place on the Earth, by its name or by its geographical
location.</obo:IAO_0000115>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">geographic
location</obo:IAO_0000111>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000003"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000104"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000011">
+ <rdfs:label xml:lang="en">planned process</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+ <obo:IAO_0000115 xml:lang="en">A processual entity that realizes a
plan which is the concretization of a plan specification.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">planned process</obo:IAO_0000111>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000066">
+ <rdfs:label xml:lang="en">investigation</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
+ <obo:IAO_0000115 xml:lang="en">a planned process that consists of
parts: planning, study design execution, documentation and which produce
conclusion(s).</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">investigation</obo:IAO_0000111>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000471">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study design
execution</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a planned process
that realizes the concretization of a study design</obo:IAO_0000115>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study design
execution</obo:IAO_0000111>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0500000">
+ <rdfs:label xml:lang="en">study design</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A plan specification
comprised of protocols (which may specify how and what kinds of data will
be gathered) that are executed as part of an investigation and is realized
during a study design execution.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">study design</obo:IAO_0000111>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000122">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">length</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A 1-D extent quality
which is equal to the distance between two points.</obo:IAO_0000115>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">length</obo:IAO_0000111>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000125">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mass</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A physical quality
that inheres in a bearer by virtue of the proportion of the bearer's
amount of matter.</obo:IAO_0000115>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mass</obo:IAO_0000111>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000001">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">length
unit</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A unit which is a
standard measure of the distance between two points.</obo:IAO_0000115>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">length
unit</obo:IAO_0000111>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/uo.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000002">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mass
unit</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A unit which is a
standard measure of the amount of matter/energy of a physical
object.</obo:IAO_0000115>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mass
unit</obo:IAO_0000111>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/uo.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000003">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">time
unit</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A unit which is a
standard measure of the dimension in which events occur in
sequence.</obo:IAO_0000115>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">time
unit</obo:IAO_0000111>
+ <obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/uo.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/GAZ_00000448">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">geographic
location</rdfs:label>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A reference to a
place on the Earth, by its name or by its geographical
location.</obo:IAO_0000115>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">geographic
location</obo:IAO_0000111>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000122">
+ <rdfs:label xml:lang="en">ready for release</rdfs:label>
+ </owl:NamedIndividual>
+</rdf:RDF>
+
+
+
+
+
=======================================
--- /dev/null
+++ /releases/2015-02-23/ontology/obsolete.owl Mon Feb 23 23:43:12 2015 UTC
@@ -0,0 +1,474 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/"
+ xml:base="http://purl.obolibrary.org/obo/"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/iao/dev/obsolete.owl">
+ <protege:defaultLanguage
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">en</protege:defaultLanguage>
+ <rdfs:comment
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete classes
from the information artifact ontology. see
http://code.google.com/p/information-artifact-ontology/</rdfs:comment>
+ <owl:versionInfo xml:lang="en">$Revision$</owl:versionInfo>
+ <rdfs:seeAlso
rdf:resource="http://code.google.com/p/information-artifact-ontology/"/>
+ <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/dev/ontology-metadata.owl"/>
+ </owl:Ontology>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000113"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000231"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
+
+
+
+ 
+
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000135">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_specifically
denotes</rdfs:label>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">8/6/2009 Alan
Ruttenberg: The suggestions is to deprecate specific and generically
denotes in favor of a single denote relationship that corresponds to the
generic sense</IAO_0000116>
+ <IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</IAO_0000117>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Smith, Ceusters,
Ruttenberg, 2000 years of philosophy</IAO_0000119>
+ <IAO_0000112
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The process of
creation is, for example, writing down on paper the name of a friend by
deliberately creating a certain pattern using ink.
+
+Here the ink + paper is the independent continuant and the carrier is the
pattern in the ink.
+
+c = pattern in the ink
+b = paper + ink
+r = friend</IAO_0000112>
+ <IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">c specifically
denotes r =def
+r is a portion of reality
+& c is a particular quality
+& c depends specifically on some independent continuant b
+& b acquired c as the result of the achievement of an objective to
enable pointing to r repeatedly.
+
+Marked means there is a changed or additional quality of the bearer - the
quality is the information carrier.
+
+Case 1
+Memory trace as mark created when reading some description of some friend.
The trace can denote.
+
+Case 2
+Pattern of ink arrayed on paper as mark when writing down a friend's
name
+
+Case 3
+Pattern of magnetic domains on scattered pieces of a hard disk platter as
mark when saving a file.</IAO_0000115>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">see
http://code.google.com/p/information-artifact-ontology/issues/detail?id=25&q=denote</IAO_0000116>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ <IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdfs:subPropertyOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000220">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_materially
denotes</rdfs:label>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">see
http://code.google.com/p/information-artifact-ontology/issues/detail?id=25&q=denote</IAO_0000116>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ <rdfs:subPropertyOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000222">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_describes</rdfs:label>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ <rdfs:subPropertyOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000223">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_represents</rdfs:label>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ <rdfs:subPropertyOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
+ </owl:ObjectProperty>
+
+
+
+ 
+
+ <owl:ObjectProperty
rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000008">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_artifact</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000012">
+ <rdfs:label xml:lang="en">obsolete2_digital entity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI_0000261</IAO_0000119>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000116 xml:lang="en">3/22/2009 Alan Ruttenberg, obsoleted
per
http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
+
+Superclass was 'digitial quality'</IAO_0000116>
+ <IAO_0000115 xml:lang="en">A digital entity is an information
entity which is a collection of bits that can be interpreted by a computer.
Two digital entities are the same if they are bitwise
identical.</IAO_0000115>
+ <IAO_0000119 xml:lang="en">group:OBI</IAO_0000119>
+ <IAO_0000111 xml:lang="en">obsolete_digital entity</IAO_0000111>
+ <IAO_0000117 xml:lang="en">person:Chris Stoeckert</IAO_0000117>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000018">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_material_entity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000019">
+ <rdfs:label xml:lang="en">obsolete2_binary digital
entity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI_0000244</IAO_0000119>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000116 xml:lang="en">3/22/2009 Alan Ruttenberg, obsoleted
per
http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
+Superclass was 'digital entity'</IAO_0000116>
+ <IAO_0000115 xml:lang="en">A binary digital entity is a digital
entity that is encoded in a way that is not easily human readable and that
contains other than text characters.</IAO_0000115>
+ <IAO_0000112 xml:lang="en">MS Word document, ZIP file, DICOM file,
JPEG file</IAO_0000112>
+ <IAO_0000111 xml:lang="en">binary digital entity</IAO_0000111>
+ <IAO_0000116 xml:lang="en">digital_entity</IAO_0000116>
+ <IAO_0000119 xml:lang="en">group:OBI</IAO_0000119>
+ <IAO_0000117 xml:lang="en">person:Chris Stoeckert</IAO_0000117>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000024">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_unit of
measure</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</IAO_0000117>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Smith, Ceusters,
Ruttenberg, 2000 years of philosophy</IAO_0000119>
+ <IAO_0000112
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The length of a
ruler.</IAO_0000112>
+ <IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a unit of measure is
the quality of some material entity compared to which another quality is
some multiple of.</IAO_0000115>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000035">
+ <rdfs:label xml:lang="en">obsolete_study
interpretation</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2009-03-16:
definition was "A conclusion is a narrative object which can be
published in a paper summerizing and interpreting a protocol
application."</IAO_0000116>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2009-03-16: work has
been done on this term during during the OBI workshop winter 2009 and the
current definition was considered acceptable for use in OBI. If there is a
need to modify this definition please notify OBI.</IAO_0000116>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI_0000005</IAO_0000119>
+ <IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PERSON: Alan
Ruttenberg</IAO_0000117>
+ <IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PERSON: Melanie
Courtot</IAO_0000117>
+ <IAO_0000118
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">conclusion</IAO_0000118>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000115 xml:lang="en">A study interpretation is a textual
entity about the implications of a study result. Examples include
discussion of whether a hypothesis is false, whether the study failed to
address the hypothesis, and whether the study results have led to new
hypotheses</IAO_0000115>
+ <IAO_0000117 xml:lang="en">Lawrence Hunter</IAO_0000117>
+ <IAO_0000117 xml:lang="en">PERSON: Jennifer Fostel</IAO_0000117>
+ <IAO_0000116 xml:lang="en">The obsoleting of narrative object
required a modest change in the definition of this term. Circularity with
"interpretation... interprets" has been removed, using
"about the implications" instead.</IAO_0000116>
+ <IAO_0000111 xml:lang="en">obsolete_study
interpretation</IAO_0000111>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ <IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000047">
+ <rdfs:label xml:lang="en">obsolete2_text based digital
entity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI_0000132</IAO_0000119>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">group:OBI</IAO_0000119>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000116 xml:lang="en">3/22/2009 Alan Ruttenberg, obsoleted
per
http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
+superclass was 'digital document'</IAO_0000116>
+ <IAO_0000115 xml:lang="en">A text based digital entity is a
digital entity that is encoded so that it only contains text
characters.</IAO_0000115>
+ <IAO_0000112 xml:lang="en">XML file, C++ source code
file</IAO_0000112>
+ <IAO_0000116 xml:lang="en">digital_entity</IAO_0000116>
+ <IAO_0000117 xml:lang="en">person:Chris Stoeckert</IAO_0000117>
+ <IAO_0000111 xml:lang="en">text based digital entity</IAO_0000111>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000059">
+ <rdfs:label xml:lang="en">obsolete2_report figure</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI_0000027</IAO_0000119>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000115 xml:lang="en">A report figure is a report display
element that has some aspect of illustration, but may be a composite of
figures, images, and other elements</IAO_0000115>
+ <IAO_0000116 xml:lang="en">I prepended the 'report ' to
make it clear that we mean parts of reports here. We may want a more
generic version of 'figure', in which case this would become a
defined class - figure and part_of some report</IAO_0000116>
+ <IAO_0000116 xml:lang="en">Replaced by defined version of
figure</IAO_0000116>
+ <IAO_0000119 xml:lang="en">group:OBI</IAO_0000119>
+ <IAO_0000117 xml:lang="en">person:Alan Ruttenberg</IAO_0000117>
+ <IAO_0000117 xml:lang="en">person:Allyson Lister</IAO_0000117>
+ <IAO_0000111 xml:lang="en">report figure</IAO_0000111>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ <IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000124"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000091">
+ <rdfs:label xml:lang="en">obsolete_report element</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2009-03-16: needs
some more work (clarify relations).</IAO_0000116>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2009-03-16: was
report display element with definition: A report display element is a
narrative object that is part of a report. Report display elements are set
off from the textual parts of a report and are typically given a label(e.g.
Figure 2) which is used to refer to the element from the text. Typically
the 2d layout is part of the identity of such elements.</IAO_0000116>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2009-03-16: work has
been done on this term during during the OBI workshop winter 2009 and the
current definition was considered acceptable for use in OBI. If there is a
need to modify this definition please notify OBI.</IAO_0000116>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2009-08-10 Alan
Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by
'textual entity' and 'figure'. Alan restored as there
are OBI dependencies and this merits further discussion</IAO_0000116>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI_0000001</IAO_0000119>
+ <IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PERSON: Melanie
Courtot</IAO_0000117>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Replaced by textual
entity and figure</IAO_0000116>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000115 xml:lang="en">A report element is a narrative object
in which information is presented and consumed by a human being, and is
part of a report. Examples of report elements are figure (dot plot), table,
text portion (may include a movie or audio clip on a web
page).</IAO_0000115>
+ <IAO_0000119 xml:lang="en">GROUP:OBI</IAO_0000119>
+ <IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</IAO_0000117>
+ <IAO_0000117 xml:lang="en">PERSON: Allyson Lister</IAO_0000117>
+ <IAO_0000116 xml:lang="en">There will be some issue here about
whether these are defined classes. As intended these are meant to denote
the parts of the report that are not textual but are typically boxed and
set within the text, labelled with some identifier, and referred to in the
text</IAO_0000116>
+ <IAO_0000111 xml:lang="en">report element</IAO_0000111>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ <IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000093">
+ <rdfs:label xml:lang="en">obsolete2_binary executable</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI_0000222</IAO_0000119>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000116 xml:lang="en">3/22/2009 Alan Ruttenberg, obsoleted
per
http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
+superclass was 'digital entity'</IAO_0000116>
+ <IAO_0000115 xml:lang="en">Binary executable is a digital entity
consisting of the binary representation of machine instructions of a
specific processor or they may be binary pseudocode for a virtual machine.
A non-source executable file is also called an object program. It is
assumed that the binary executable file contains properly-formatted
computer instructions. (derived from Wikipedia, Nov 1, 2007)</IAO_0000115>
+ <IAO_0000111 xml:lang="en">binary executable</IAO_0000111>
+ <IAO_0000119 xml:lang="en">group:OBI</IAO_0000119>
+ <IAO_0000117 xml:lang="en">person:Jennifer Fostel</IAO_0000117>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000097">
+ <rdfs:label xml:lang="en">obsolete_report table</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2009-08-10 Alan
Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by
'textual entity table'. Alan restored as there are OBI
dependencies and this merits further discussion</IAO_0000116>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI_0000265</IAO_0000119>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000115 xml:lang="en">A report table is a report display
element consisting of a matrix of cells layed out in a grid, some set of
which are filled with some information content</IAO_0000115>
+ <IAO_0000119 xml:lang="en">group:OBI</IAO_0000119>
+ <IAO_0000117 xml:lang="en">person:Alan Ruttenberg</IAO_0000117>
+ <IAO_0000117 xml:lang="en">person:Allyson Lister</IAO_0000117>
+ <IAO_0000111 xml:lang="en">report table</IAO_0000111>
+ <IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000002"/>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000105">
+ <rdfs:label xml:lang="en">obsolete2_digital document</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI_0000195</IAO_0000119>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000116 xml:lang="en">3/22/2009 Alan Ruttenberg, obsoleted
per
http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
+superclass was 'digial entity'</IAO_0000116>
+ <IAO_0000115 xml:lang="en">A digital document is a digital entity
consisting of an electronic file which can be rendered into human-readable
form by one or more computational applications. The digital document does
not refer to the information content of the document but to an instance of
the file.</IAO_0000115>
+ <IAO_0000111 xml:lang="en">digital document</IAO_0000111>
+ <IAO_0000119 xml:lang="en">group:OBI</IAO_0000119>
+ <IAO_0000117 xml:lang="en">person:Jennifer Fostel</IAO_0000117>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000128">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_identifier</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">_identifier is a
container under information content entity for collecting types of terms to
indicate a specific instance or clas of what was used or participated in an
investigation. Identifiers are borne by a product or its packaging, and can
be encoded in a variety of other information objects, such as bar codes,
numerals, or patterns of dots.
+
+Note: everybody agreed that identifier is probably a too general term. We
however felt that it would be appropriate to group "identifiying"
terms under some kind of umbrella. We therefore propose to use _identifier
for that purpose. As per OBI conventions, the _ prefixing identifier
indicates that this is a helper class and shouldn't be considered as
final.</IAO_0000116>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000121"/>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000141">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_digital
quality</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Need to rework
digital entity. Digital quality was suggested by Barry.</IAO_0000116>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000116>3/22/2009 Alan Ruttenberg, obsoleted per
http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4</IAO_0000116>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000182">
+ <rdfs:label xml:lang="en">obsolete_survival curve</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000115 xml:lang="en">A survival curve is a report graph
which is a graphical representation of data where the percentage of
survival is plotted as a function of time.</IAO_0000115>
+ <IAO_0000117 xml:lang="en">PERSON:Chris Stoeckert</IAO_0000117>
+ <IAO_0000117 xml:lang="en">PERSON:James Malone</IAO_0000117>
+ <IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</IAO_0000117>
+ <IAO_0000119 xml:lang="en">WEB:
http://www.graphpad.com/www/book/survive.htm</IAO_0000119>
+ <IAO_0000111 xml:lang="en">obsolete_survival curve</IAO_0000111>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ <IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000576">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete_establishing
a CRID registry</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+ <IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a planned process
with the objective to establish a system that allows to refer to specific
entities of a certain kind and store information about them, by
establishing a CRID registry and plan specifications for the process of 1)
assigning a CRID and 2) looking up a CRID.</IAO_0000115>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000116>MC, 20101124: deprecated following discussion at IAO
call 20101124. Term was deemed not necessary - no use case for
now.</IAO_0000116>
+ <IAO_0000231
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000103"/>
+
+
+
+ 
+
+ <owl:Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000226"/>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000230">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
+ <rdfs:label xml:lang="en">other</rdfs:label>
+ <owl:deprecated
rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ <IAO_0000116 xml:lang="en">This is to be used if none of the
existing instances cover the reason for obsolescence. An editor note should
indicate this new reason.</IAO_0000116>
+ <IAO_0000116 xml:lang="en">We expect to be able to mine these new
reasons and add instances as required.</IAO_0000116>
+ </owl:NamedIndividual>
+</rdf:RDF>
+
+
+
+
+
=======================================
--- /dev/null
+++ /releases/2015-02-23/ontology/ontology-metadata.owl Mon Feb 23 23:43:12
2015 UTC
@@ -0,0 +1,840 @@
+<?xml version="1.0"?>
+<rdf:RDF
xmlns="http://purl.obolibrary.org/obo/iao/dev/ontology-metadata.owl#"
+
xml:base="http://purl.obolibrary.org/obo/iao/dev/ontology-metadata.owl"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:xsp="http://www.owl-ontologies.com/2005/08/07/xsp.owl#"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:swrl="http://www.w3.org/2003/11/swrl#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/iao/dev/ontology-metadata.owl">
+ <protege:defaultLanguage
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">en</protege:defaultLanguage>
+ <owl:versionInfo xml:lang="en">$Revision$</owl:versionInfo>
+ </owl:Ontology>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
+ <rdfs:label xml:lang="en">editor preferred term</rdfs:label>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The concise, meaningful, and
human-friendly name for a class or property preferred by the ontology
developers. (US-English)</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
term</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
+ <rdfs:label xml:lang="en">example of usage</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A phrase describing how a class
name should be used. May also include other kinds of examples that
facilitate immediate understanding of a class semantics, such as widely
known prototypical subclasses or instances of the class. Although essential
for high level terms, examples for low level terms (e.g., Affymetrix HU133
array) are not</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">example</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000113">
+ <rdfs:label xml:lang="en">in branch</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An annotation property indicating
which module the terms belong to. This is currently experimental and not
implemented yet.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">GROUP:OBI</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000277</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">in branch</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
+ <rdfs:label xml:lang="en">has curation status</rdfs:label>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has curation
status</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
+ <rdfs:label xml:lang="en">definition</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">2012-04-05:
+Barry Smith
+
+The official OBI definition, explaining the meaning of a class or
property: 'Shall be Aristotelian, formalized and normalized. Can be
augmented with colloquial definitions' is terrible.
+
+Can you fix to something like:
+
+A statement of necessary and sufficient conditions explaining the meaning
of an expression referring to a class or property.
+
+Alan Ruttenberg
+
+Your proposed definition is a reasonable candidate, except that it is very
common that necessary and sufficient conditions are not given. Mostly they
are necessary, occasionally they are necessary and sufficient or just
sufficient. Often they use terms that are not themselves defined and so
they effectively can't be evaluated by those criteria.
+
+On the specifics of the proposed definition:
+
+We don't have definitions of 'meaning' or
'expression' or 'property'. For 'reference'
in the intended sense I think we use the term 'denotation'. For
'expression', I think we you mean symbol, or identifier. For
'meaning' it differs for class and property. For class we want
documentation that let's the intended reader determine whether an
entity is instance of the class, or not. For property we want documentation
that let's the intended reader determine, given a pair of potential
relata, whether the assertion that the relation holds is true. The
'intended reader' part suggests that we also specify who, we
expect, would be able to understand the definition, and also generalizes
over human and computer reader to include textual and logical definition.
+
+Personally, I am more comfortable weakening definition to documentation,
with instructions as to what is desirable.
+
+We also have the outstanding issue of how to aim different definitions to
different audiences. A clinical audience reading chebi wants a different
sort of definition documentation/definition from a chemistry trained
audience, and similarly there is a need for a definition that is adequate
for an ontologist to work with. </obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The official definition, explaining
the meaning of a class or property. Shall be Aristotelian, formalized and
normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
+ <rdfs:label xml:lang="en">editor note</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An administrative note intended for
its editor. It may not be included in the publication version of the
ontology, so it should contain nothing necessary for end users to
understand the ontology.</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
+ <rdfs:label xml:lang="en">term editor</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term
editor and definition modified accordingly. See
http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">Name of editor entering the term in
the file. The term editor is a point of contact for information regarding
the term. The term editor may be, but is not always, the author of the
definition, which may have been worked upon by several
people</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
+ <rdfs:label xml:lang="en">alternative term</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An alternative name for a class or
property which means the same thing as the preferred name (semantically
equivalent)</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
+ <rdfs:label xml:lang="en">definition source</rdfs:label>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Discussion on
obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
+ <obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in
external database to indicate / attribute source(s) for the definition.
Free text indicate / attribute source(s) for the definition. EXAMPLE:
Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on
31.01.2007</obo:IAO_0000115>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000231">
+ <rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Relates an annotation property to
an obsolescence reason. The values of obsolescence reasons come from a list
of predefined terms, instances of the class obsolescence reason
specification.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">has obsolescence
reason</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
+ <rdfs:label xml:lang="en">curator note</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An administrative note of use for a
curator but of no use for a user</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000411">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">is denotator
type</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In OWL 2 add
AnnotationPropertyRange('is denotator type' 'denotator
type')</obo:IAO_0000116>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relates an class
defined in an ontology, to the type of it's denotator</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">is denotator type</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
+ <rdfs:label xml:lang="en">imported from</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">For external terms/classes, the
ontology from which the term was imported</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000424">
+ <rdfs:label xml:lang="en">expand expression to</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chris
Mungall</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an
object property (or possibly a data property) which can be used by a
macro-expansion engine to generate more complex expressions from simpler
ones</obo:IAO_0000115>
+ <obo:IAO_0000112 xml:lang="en">ObjectProperty: RO_0002104
+Label: has plasma membrane part
+Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051
some (http://purl.org/obo/owl/GO#GO_0005886 and
http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
+</obo:IAO_0000112>
+ <obo:IAO_0000111 xml:lang="en">expand expression
to</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000425">
+ <rdfs:label xml:lang="en">expand assertion to</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an
annotation property which can be expanded into a more detailed
axiom.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
+ <obo:IAO_0000112 xml:lang="en">ObjectProperty: RO???
+Label: spatially disjoint from
+Annotations: expand_assertion_to "DisjointClasses:
(http://purl.obolibrary.org/obo/BFO_0000051 some ?X)
(http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
+</obo:IAO_0000112>
+ <obo:IAO_0000111 xml:lang="en">expand assertion
to</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000426">
+ <rdfs:label xml:lang="en">first order logic expression</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">first order logic
expression</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000427">
+ <rdfs:label xml:lang="en">antisymmetric property</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">antisymmetric
property</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">part_of antisymmetric property
xsd:true</obo:IAO_0000112>
+ <obo:IAO_0000115 xml:lang="en">use boolean value xsd:true to
indicate that the property is an antisymmetric property</obo:IAO_0000115>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000589">
+ <rdfs:label xml:lang="en">OBO foundry unique label</rdfs:label>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The intended usage
of that property is as follow: OBO foundry unique labels are automatically
generated based on regular expressions provided by each ontology, so that
SO could specify unique label = 'sequence ' + [label], etc. , MA
could specify 'mouse + [label]' etc. Upon importing terms,
ontology developers can choose to use the 'OBO foundry unique
label' for an imported term or not. The same applies to
tools .</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">An alternative name for a class or
property which is unique across the OBO Foundry.</obo:IAO_0000115>
+ <obo:IAO_0000119 xml:lang="en">GROUP:OBO Foundry
<http://obofoundry.org/></obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">OBO foundry unique
label</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Chris
Mungall</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000596">
+ <rdfs:label xml:lang="en">has ID digit count</rdfs:label>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115>Relates an ontology used to record id policy to
the number of digits in the URI. The URI is: the 'has ID prefix"
annotation property value concatenated with an integer in the id range
(left padded with "0"s to make this many digits)</obo:IAO_0000115>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000597">
+ <rdfs:label xml:lang="en">has ID range allocated to</rdfs:label>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115>Relates a datatype that encodes a range of
integers to the name of the person or organization who can use those ids
constructed in that range to define new terms</obo:IAO_0000115>
+ <obo:IAO_0000112>Datatype: idrange:1
+Annotations: 'has ID range allocated to': "Chris
Mungall"
+EquivalentTo: xsd:integer[> 2151 , <= 2300]
+</obo:IAO_0000112>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000598">
+ <rdfs:label>has ID policy for</rdfs:label>
+ <obo:IAO_0000115>Relating an ontology used to record id policy to
the ontology namespace whose policy it manages</obo:IAO_0000115>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000599">
+ <rdfs:label xml:lang="en">has ID prefix</rdfs:label>
+ <obo:IAO_0000115>Relates an ontology used to record id policy to a
prefix concatenated with an integer in the id range (left padded with
"0"s to make this many digits) to construct an ID for a term
being created.</obo:IAO_0000115>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000600">
+ <rdfs:label xml:lang="en">elucidation</rdfs:label>
+ <obo:IAO_0000119 xml:lang="en">Person:Barry Smith</obo:IAO_0000119>
+ <obo:IAO_0000600 xml:lang="en">Primitive terms in a highest-level
ontology such as BFO are terms which are so basic to our understanding of
reality that there is no way of defining them in a non-circular fashion.
For these, therefore, we can provide only elucidations, supplemented by
examples and by axioms</obo:IAO_0000600>
+ <obo:IAO_0000111 xml:lang="en">elucidation</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000601">
+ <rdfs:label xml:lang="en">has associated axiom(nl)</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">An axiom associated with a term
expressed using natural language</obo:IAO_0000600>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has associated
axiom(nl)</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000602">
+ <rdfs:label xml:lang="en">has associated axiom(fol)</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">An axiom expressed in first order
logic using CLIF syntax</obo:IAO_0000600>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">has associated
axiom(fol)</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000603">
+ <rdfs:label xml:lang="en">is allocated id range</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Add as annotation triples in the
granting ontology</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Relates an ontology IRI to an
(inclusive) range of IRIs in an OBO name space. The range is give as, e.g.
"IAO_0020000-IAO_0020999"</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">is allocated id
range</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0010000">
+ <rdfs:label xml:lang="en">has axiom label</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">A URI that is intended to be unique
label for an axiom used for tracking change to the ontology. For an axiom
expressed in different languages, each expression is given the same
URI</obo:IAO_0000600>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has axiom id</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
+ <rdfs:label xml:lang="en">term replaced by</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Add as annotation triples in the
granting ontology</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the
term to another term that can be used as a substitute</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">term replaced by</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000031"/>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027">
+ <rdfs:label xml:lang="en">data item</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000030">
+ <rdfs:label xml:lang="en">information content entity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000078">
+ <rdfs:label xml:lang="en">curation status
specification</rdfs:label>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:oneOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000124"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000423"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000123"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000428"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000121"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000002"/>
+ </owl:oneOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ <obo:IAO_0000116 xml:lang="en">Better to represent curation as a
process with parts and then relate labels to that process (in IAO
meeting)</obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000266</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The curation status of the term.
The allowed values come from an enumerated list of predefined terms. See
the specification of these instances for more detailed definitions of each
enumerated value.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">curation status
specification</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000102">
+ <rdfs:label xml:lang="en">data about an ontology part</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">data about an ontology part is a
data item about a part of an ontology, for example a term</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000225">
+ <rdfs:label xml:lang="en">obsolescence reason
specification</rdfs:label>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:oneOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000227"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000228"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000226"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000229"/>
+ </owl:oneOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000116 xml:lang="en">The creation of this class has been
inspired in part by Werner Ceusters' paper, Applying evolutionary
terminology auditing to the Gene Ontology.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">The reason for which a term has
been deprecated. The allowed values come from an enumerated list of
predefined terms. See the specification of these instances for more
detailed definitions of each enumerated value.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">obsolescence reason
specification</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000409">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">denotator
type</rdfs:label>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:oneOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000410"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000420"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000421"/>
+ </owl:oneOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A denotator type
indicates how a term should be interpreted from an ontological
perspective.</obo:IAO_0000115>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Barry Smith, Werner
Ceusters</obo:IAO_0000119>
+ <obo:IAO_0000112
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The Basic Formal
Ontology ontology makes a distinction between Universals and defined
classes, where the formal are "natural kinds" and the latter
arbitrary collections of entities.</obo:IAO_0000112>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#DbXref">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#Definition">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#Subset">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:oneOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000224"/>
+ </owl:oneOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#Synonym">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#SynonymType">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ </owl:Class>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000002">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">example to be eventually
removed</rdfs:label>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000103">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
+ <rdfs:label xml:lang="en">failed exploratory term</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The term was used in an attempt to
structure part of the ontology but in retrospect failed to do a good
job</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000120">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">metadata complete</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Class has all its metadata, but is
either not guaranteed to be in its final location in the asserted IS_A
hierarchy or refers to another class that is not complete.</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000121">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">organizational term</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">term created to ease viewing/sort
terms for development purpose, and will not be included in a
release</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000122">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">ready for release</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Class has undergone final review,
is ready for use, and will be included in the next release. Any class
lacking "ready_for_release" should be considered likely to change
place in hierarchy, have its definition refined, or be obsoleted in the
next release. Those classes deemed "ready_for_release" will also
derived from a chain of ancestor classes that are also
"ready_for_release."</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000123">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">metadata incomplete</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Class is being worked on; however,
the metadata (including definition) are not complete or sufficiently clear
to the branch editors.</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000124">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">uncurated</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Nothing done yet beyond assigning a
unique class ID and proposing a preferred term.</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000125">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">pending final vetting</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">All definitions, placement in the
asserted IS_A hierarchy and required minimal metadata are complete. The
class is awaiting a final review by someone other than the term
editor.</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000224">
+ <rdf:type
rdf:resource="http://www.geneontology.org/formats/oboInOwl#Subset"/>
+ <rdfs:label xml:lang="en">core</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Core is an instance of a grouping
of terms from an ontology or ontologies. It is used by the ontology to
identify main classes.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Melanie
Courtot</obo:IAO_0000117>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000226">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
+ <rdfs:label xml:lang="en">placeholder removed</rdfs:label>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000227">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
+ <rdfs:label xml:lang="en">terms merged</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">An editor note should explain what
were the merged terms and the reason for the merge.</obo:IAO_0000116>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000228">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
+ <rdfs:label xml:lang="en">term imported</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">This is to be used when the
original term has been replaced by a term imported from an other ontology.
An editor note should indicate what is the URI of the new term to
use.</obo:IAO_0000116>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000229">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
+ <rdfs:label xml:lang="en">term split</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">This is to be used when a term has
been split in two or more new terms. An editor note should indicate the
reason for the split and indicate the URIs of the new terms
created.</obo:IAO_0000116>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000410">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">universal</rdfs:label>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A Formal Theory of
Substances, Qualities, and Universals,
http://ontology.buffalo.edu/bfo/SQU.pdf</obo:IAO_0000119>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Hard to give a
definition for. Intuitively a "natural kind" rather than a
collection of any old things, which a class is able to be, formally. At the
meta level, universals are defined as positives, are disjoint with their
siblings, have single asserted parents.</obo:IAO_0000116>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000420">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">defined
class</rdfs:label>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">"definitions",
in some readings, always are given by necessary and sufficient conditions.
So one must be careful (and this is difficult sometimes) to distinguish
between defined classes and universal.</obo:IAO_0000116>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A defined class is a
class that is defined by a set of logically necessary and sufficient
conditions but is not a universal</obo:IAO_0000115>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000421">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">named class
expression</rdfs:label>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A named class
expression is a logical expression that is given a name. The name can be
used in place of the expression.</obo:IAO_0000115>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">named class
expressions are used in order to have more concise logical definition but
their extensions may not be interesting classes on their own. In languages
such as OWL, with no provisions for macros, these show up as actuall
classes. Tools may with to not show them as such, and to replace uses of
the macros with their expansions</obo:IAO_0000116>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000423">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">to be replaced with external ontology
term</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Terms with this status should
eventually replaced with a term from another ontology.</obo:IAO_0000115>
+ <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000428">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">requires discussion</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A term that is metadata complete,
has been reviewed, and problems have been identified that require
discussion before release. Such a term requires editor note(s) to identify
the outstanding issues.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <rdf:Description>
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#AllDifferent"/>
+ <owl:distinctMembers rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000121"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000123"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000124"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000423"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000428"/>
+ </owl:distinctMembers>
+ </rdf:Description>
+ <rdf:Description>
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#AllDifferent"/>
+ <owl:distinctMembers rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000226"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000227"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000228"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000229"/>
+ </owl:distinctMembers>
+ </rdf:Description>
+</rdf:RDF>
+
+
+
+
+
=======================================
--- /dev/null
+++ /releases/2015-02-23/ontology-metadata.owl Mon Feb 23 23:43:12 2015 UTC
@@ -0,0 +1,845 @@
+<?xml version="1.0"?>
+<rdf:RDF
xmlns="http://purl.obolibrary.org/obo/iao/dev/ontology-metadata.owl#"
+
xml:base="http://purl.obolibrary.org/obo/iao/dev/ontology-metadata.owl"
+ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+ xmlns:xsp="http://www.owl-ontologies.com/2005/08/07/xsp.owl#"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:swrl="http://www.w3.org/2003/11/swrl#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
+ <owl:Ontology
rdf:about="http://purl.obolibrary.org/obo/iao/dev/ontology-metadata.owl">
+ <protege:defaultLanguage
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">en</protege:defaultLanguage>
+ <owl:versionInfo xml:lang="en">$Revision$</owl:versionInfo>
+ </owl:Ontology>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
+ <rdfs:label xml:lang="en">editor preferred term</rdfs:label>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The concise, meaningful, and
human-friendly name for a class or property preferred by the ontology
developers. (US-English)</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
term</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
+ <rdfs:label xml:lang="en">example of usage</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A phrase describing how a class
name should be used. May also include other kinds of examples that
facilitate immediate understanding of a class semantics, such as widely
known prototypical subclasses or instances of the class. Although essential
for high level terms, examples for low level terms (e.g., Affymetrix HU133
array) are not</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">example</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000113">
+ <rdfs:label xml:lang="en">in branch</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An annotation property indicating
which module the terms belong to. This is currently experimental and not
implemented yet.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">GROUP:OBI</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000277</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">in branch</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
+ <rdfs:label xml:lang="en">has curation status</rdfs:label>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has curation
status</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
+ <rdfs:label xml:lang="en">definition</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">2012-04-05:
+Barry Smith
+
+The official OBI definition, explaining the meaning of a class or
property: 'Shall be Aristotelian, formalized and normalized. Can be
augmented with colloquial definitions' is terrible.
+
+Can you fix to something like:
+
+A statement of necessary and sufficient conditions explaining the meaning
of an expression referring to a class or property.
+
+Alan Ruttenberg
+
+Your proposed definition is a reasonable candidate, except that it is very
common that necessary and sufficient conditions are not given. Mostly they
are necessary, occasionally they are necessary and sufficient or just
sufficient. Often they use terms that are not themselves defined and so
they effectively can't be evaluated by those criteria.
+
+On the specifics of the proposed definition:
+
+We don't have definitions of 'meaning' or
'expression' or 'property'. For 'reference'
in the intended sense I think we use the term 'denotation'. For
'expression', I think we you mean symbol, or identifier. For
'meaning' it differs for class and property. For class we want
documentation that let's the intended reader determine whether an
entity is instance of the class, or not. For property we want documentation
that let's the intended reader determine, given a pair of potential
relata, whether the assertion that the relation holds is true. The
'intended reader' part suggests that we also specify who, we
expect, would be able to understand the definition, and also generalizes
over human and computer reader to include textual and logical definition.
+
+Personally, I am more comfortable weakening definition to documentation,
with instructions as to what is desirable.
+
+We also have the outstanding issue of how to aim different definitions to
different audiences. A clinical audience reading chebi wants a different
sort of definition documentation/definition from a chemistry trained
audience, and similarly there is a need for a definition that is adequate
for an ontologist to work with. </obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The official definition, explaining
the meaning of a class or property. Shall be Aristotelian, formalized and
normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
+ <rdfs:label xml:lang="en">editor note</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An administrative note intended for
its editor. It may not be included in the publication version of the
ontology, so it should contain nothing necessary for end users to
understand the ontology.</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
+ <rdfs:label xml:lang="en">term editor</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term
editor and definition modified accordingly. See
http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">Name of editor entering the term in
the file. The term editor is a point of contact for information regarding
the term. The term editor may be, but is not always, the author of the
definition, which may have been worked upon by several
people</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
+ <rdfs:label xml:lang="en">alternative term</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An alternative name for a class or
property which means the same thing as the preferred name (semantically
equivalent)</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
+ <rdfs:label xml:lang="en">definition source</rdfs:label>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Discussion on
obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Daniel
Schober</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
+ <obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in
external database to indicate / attribute source(s) for the definition.
Free text indicate / attribute source(s) for the definition. EXAMPLE:
Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on
31.01.2007</obo:IAO_0000115>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000231">
+ <rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Relates an annotation property to
an obsolescence reason. The values of obsolescence reasons come from a list
of predefined terms, instances of the class obsolescence reason
specification.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">has obsolescence
reason</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
+ <rdfs:label xml:lang="en">curator note</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">An administrative note of use for a
curator but of no use for a user</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000411">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">is denotator
type</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In OWL 2 add
AnnotationPropertyRange('is denotator type' 'denotator
type')</obo:IAO_0000116>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relates an class
defined in an ontology, to the type of it's denotator</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">is denotator type</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
+ <rdfs:label xml:lang="en">imported from</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">For external terms/classes, the
ontology from which the term was imported</obo:IAO_0000115>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000424">
+ <rdfs:label xml:lang="en">expand expression to</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chris
Mungall</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an
object property (or possibly a data property) which can be used by a
macro-expansion engine to generate more complex expressions from simpler
ones</obo:IAO_0000115>
+ <obo:IAO_0000112 xml:lang="en">ObjectProperty: RO_0002104
+Label: has plasma membrane part
+Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051
some (http://purl.org/obo/owl/GO#GO_0005886 and
http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
+</obo:IAO_0000112>
+ <obo:IAO_0000111 xml:lang="en">expand expression
to</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000425">
+ <rdfs:label xml:lang="en">expand assertion to</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an
annotation property which can be expanded into a more detailed
axiom.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
+ <obo:IAO_0000112 xml:lang="en">ObjectProperty: RO???
+Label: spatially disjoint from
+Annotations: expand_assertion_to "DisjointClasses:
(http://purl.obolibrary.org/obo/BFO_0000051 some ?X)
(http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
+</obo:IAO_0000112>
+ <obo:IAO_0000111 xml:lang="en">expand assertion
to</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000426">
+ <rdfs:label xml:lang="en">first order logic expression</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">first order logic
expression</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000427">
+ <rdfs:label xml:lang="en">antisymmetric property</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">antisymmetric
property</obo:IAO_0000111>
+ <obo:IAO_0000112 xml:lang="en">part_of antisymmetric property
xsd:true</obo:IAO_0000112>
+ <obo:IAO_0000115 xml:lang="en">use boolean value xsd:true to
indicate that the property is an antisymmetric property</obo:IAO_0000115>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000589">
+ <rdfs:label xml:lang="en">OBO foundry unique label</rdfs:label>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The intended usage
of that property is as follow: OBO foundry unique labels are automatically
generated based on regular expressions provided by each ontology, so that
SO could specify unique label = 'sequence ' + [label], etc. , MA
could specify 'mouse + [label]' etc. Upon importing terms,
ontology developers can choose to use the 'OBO foundry unique
label' for an imported term or not. The same applies to
tools .</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">An alternative name for a class or
property which is unique across the OBO Foundry.</obo:IAO_0000115>
+ <obo:IAO_0000119 xml:lang="en">GROUP:OBO Foundry
<http://obofoundry.org/></obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">OBO foundry unique
label</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bjoern
Peters</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Chris
Mungall</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000596">
+ <rdfs:label xml:lang="en">has ID digit count</rdfs:label>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115>Relates an ontology used to record id policy to
the number of digits in the URI. The URI is: the 'has ID prefix"
annotation property value concatenated with an integer in the id range
(left padded with "0"s to make this many digits)</obo:IAO_0000115>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000597">
+ <rdfs:label xml:lang="en">has ID range allocated to</rdfs:label>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115>Relates a datatype that encodes a range of
integers to the name of the person or organization who can use those ids
constructed in that range to define new terms</obo:IAO_0000115>
+ <obo:IAO_0000112>Datatype: idrange:1
+Annotations: 'has ID range allocated to': "Chris
Mungall"
+EquivalentTo: xsd:integer[> 2151 , <= 2300]
+</obo:IAO_0000112>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000598">
+ <rdfs:label>has ID policy for</rdfs:label>
+ <obo:IAO_0000115>Relating an ontology used to record id policy to
the ontology namespace whose policy it manages</obo:IAO_0000115>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000599">
+ <rdfs:label xml:lang="en">has ID prefix</rdfs:label>
+ <obo:IAO_0000115>Relates an ontology used to record id policy to a
prefix concatenated with an integer in the id range (left padded with
"0"s to make this many digits) to construct an ID for a term
being created.</obo:IAO_0000115>
+ <obo:IAO_0000112>Ontology:
<http://purl.obolibrary.org/obo/ro/idrange/>
+ Annotations:
+ 'has ID prefix':
"http://purl.obolibrary.org/obo/RO_"
+ 'has ID digit count' : 7,
+ rdfs:label "RO id policy"
+ 'has ID policy for': "RO"</obo:IAO_0000112>
+ <obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000600">
+ <rdfs:label xml:lang="en">elucidation</rdfs:label>
+ <obo:IAO_0000119 xml:lang="en">Person:Barry Smith</obo:IAO_0000119>
+ <obo:IAO_0000600 xml:lang="en">Primitive terms in a highest-level
ontology such as BFO are terms which are so basic to our understanding of
reality that there is no way of defining them in a non-circular fashion.
For these, therefore, we can provide only elucidations, supplemented by
examples and by axioms</obo:IAO_0000600>
+ <obo:IAO_0000111 xml:lang="en">elucidation</obo:IAO_0000111>
+ <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000601">
+ <rdfs:label xml:lang="en">has associated axiom(nl)</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">An axiom associated with a term
expressed using natural language</obo:IAO_0000600>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has associated
axiom(nl)</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000602">
+ <rdfs:label xml:lang="en">has associated axiom(fol)</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">An axiom expressed in first order
logic using CLIF syntax</obo:IAO_0000600>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000111 xml:lang="en">has associated
axiom(fol)</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000603">
+ <rdfs:label xml:lang="en">is allocated id range</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Add as annotation triples in the
granting ontology</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Relates an ontology IRI to an
(inclusive) range of IRIs in an OBO name space. The range is give as, e.g.
"IAO_0020000-IAO_0020999"</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">is allocated id
range</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0010000">
+ <rdfs:label xml:lang="en">has axiom label</rdfs:label>
+ <obo:IAO_0000600 xml:lang="en">A URI that is intended to be unique
label for an axiom used for tracking change to the ontology. For an axiom
expressed in different languages, each expression is given the same
URI</obo:IAO_0000600>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000111 xml:lang="en">has axiom id</obo:IAO_0000111>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
+ <rdfs:label xml:lang="en">term replaced by</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Add as annotation triples in the
granting ontology</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000119>
+ <obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the
term to another term that can be used as a substitute</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">term replaced by</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:AnnotationProperty>
+
+
+
+ 
+
+
+
+
+ 
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000031">
+ <rdfs:label xml:lang="en">generically dependent
continuant</rdfs:label>
+ <rdfs:isDefinedBy
rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027">
+ <rdfs:label xml:lang="en">data item</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000030">
+ <rdfs:label xml:lang="en">information content entity</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000078">
+ <rdfs:label xml:lang="en">curation status
specification</rdfs:label>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:oneOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000124"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000423"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000123"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000428"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000121"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000002"/>
+ </owl:oneOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ <obo:IAO_0000116 xml:lang="en">Better to represent curation as a
process with parts and then relate labels to that process (in IAO
meeting)</obo:IAO_0000116>
+ <obo:IAO_0000119
xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
+ <obo:IAO_0000119 xml:lang="en">OBI_0000266</obo:IAO_0000119>
+ <obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The curation status of the term.
The allowed values come from an enumerated list of predefined terms. See
the specification of these instances for more detailed definitions of each
enumerated value.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">curation status
specification</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000102">
+ <rdfs:label xml:lang="en">data about an ontology part</rdfs:label>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">data about an ontology part is a
data item about a part of an ontology, for example a term</obo:IAO_0000115>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000225">
+ <rdfs:label xml:lang="en">obsolescence reason
specification</rdfs:label>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:oneOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000227"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000228"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000226"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000103"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000229"/>
+ </owl:oneOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Melanie
Courtot</obo:IAO_0000117>
+ <obo:IAO_0000116 xml:lang="en">The creation of this class has been
inspired in part by Werner Ceusters' paper, Applying evolutionary
terminology auditing to the Gene Ontology.</obo:IAO_0000116>
+ <obo:IAO_0000115 xml:lang="en">The reason for which a term has
been deprecated. The allowed values come from an enumerated list of
predefined terms. See the specification of these instances for more
detailed definitions of each enumerated value.</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">obsolescence reason
specification</obo:IAO_0000111>
+ <obo:IAO_0000114
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000409">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">denotator
type</rdfs:label>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:oneOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000410"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000420"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000421"/>
+ </owl:oneOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A denotator type
indicates how a term should be interpreted from an ontological
perspective.</obo:IAO_0000115>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Barry Smith, Werner
Ceusters</obo:IAO_0000119>
+ <obo:IAO_0000112
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The Basic Formal
Ontology ontology makes a distinction between Universals and defined
classes, where the formal are "natural kinds" and the latter
arbitrary collections of entities.</obo:IAO_0000112>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#DbXref">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#Definition">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#Subset">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:oneOf rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000224"/>
+ </owl:oneOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#Synonym">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ </owl:Class>
+
+
+
+ 
+
+ <owl:Class
rdf:about="http://www.geneontology.org/formats/oboInOwl#SynonymType">
+ <rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
+ </owl:Class>
+
+
+
+ 
+
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000002">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">example to be eventually
removed</rdfs:label>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000103">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
+ <rdfs:label xml:lang="en">failed exploratory term</rdfs:label>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Person:Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">The term was used in an attempt to
structure part of the ontology but in retrospect failed to do a good
job</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000120">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">metadata complete</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Class has all its metadata, but is
either not guaranteed to be in its final location in the asserted IS_A
hierarchy or refers to another class that is not complete.</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000121">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">organizational term</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">term created to ease viewing/sort
terms for development purpose, and will not be included in a
release</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000122">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">ready for release</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Class has undergone final review,
is ready for use, and will be included in the next release. Any class
lacking "ready_for_release" should be considered likely to change
place in hierarchy, have its definition refined, or be obsoleted in the
next release. Those classes deemed "ready_for_release" will also
derived from a chain of ancestor classes that are also
"ready_for_release."</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000123">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">metadata incomplete</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Class is being worked on; however,
the metadata (including definition) are not complete or sufficiently clear
to the branch editors.</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000124">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">uncurated</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Nothing done yet beyond assigning a
unique class ID and proposing a preferred term.</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000125">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">pending final vetting</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">All definitions, placement in the
asserted IS_A hierarchy and required minimal metadata are complete. The
class is awaiting a final review by someone other than the term
editor.</obo:IAO_0000115>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000224">
+ <rdf:type
rdf:resource="http://www.geneontology.org/formats/oboInOwl#Subset"/>
+ <rdfs:label xml:lang="en">core</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">Core is an instance of a grouping
of terms from an ontology or ontologies. It is used by the ontology to
identify main classes.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000117 xml:lang="en">PERSON: Melanie
Courtot</obo:IAO_0000117>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000226">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
+ <rdfs:label xml:lang="en">placeholder removed</rdfs:label>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000227">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
+ <rdfs:label xml:lang="en">terms merged</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">An editor note should explain what
were the merged terms and the reason for the merge.</obo:IAO_0000116>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000228">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
+ <rdfs:label xml:lang="en">term imported</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">This is to be used when the
original term has been replaced by a term imported from an other ontology.
An editor note should indicate what is the URI of the new term to
use.</obo:IAO_0000116>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000229">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
+ <rdfs:label xml:lang="en">term split</rdfs:label>
+ <obo:IAO_0000116 xml:lang="en">This is to be used when a term has
been split in two or more new terms. An editor note should indicate the
reason for the split and indicate the URIs of the new terms
created.</obo:IAO_0000116>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000410">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">universal</rdfs:label>
+ <obo:IAO_0000119
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A Formal Theory of
Substances, Qualities, and Universals,
http://ontology.buffalo.edu/bfo/SQU.pdf</obo:IAO_0000119>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Hard to give a
definition for. Intuitively a "natural kind" rather than a
collection of any old things, which a class is able to be, formally. At the
meta level, universals are defined as positives, are disjoint with their
siblings, have single asserted parents.</obo:IAO_0000116>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000420">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">defined
class</rdfs:label>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">"definitions",
in some readings, always are given by necessary and sufficient conditions.
So one must be careful (and this is difficult sometimes) to distinguish
between defined classes and universal.</obo:IAO_0000116>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A defined class is a
class that is defined by a set of logically necessary and sufficient
conditions but is not a universal</obo:IAO_0000115>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000421">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">named class
expression</rdfs:label>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A named class
expression is a logical expression that is given a name. The name can be
used in place of the expression.</obo:IAO_0000115>
+ <obo:IAO_0000117
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan
Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000116
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">named class
expressions are used in order to have more concise logical definition but
their extensions may not be interesting classes on their own. In languages
such as OWL, with no provisions for macros, these show up as actuall
classes. Tools may with to not show them as such, and to replace uses of
the macros with their expansions</obo:IAO_0000116>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000423">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">to be replaced with external ontology
term</rdfs:label>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000115 xml:lang="en">Terms with this status should
eventually replaced with a term from another ontology.</obo:IAO_0000115>
+ <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/IAO_0000428">
+ <rdf:type
rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
+ <rdfs:label xml:lang="en">requires discussion</rdfs:label>
+ <obo:IAO_0000115 xml:lang="en">A term that is metadata complete,
has been reviewed, and problems have been identified that require
discussion before release. Such a term requires editor note(s) to identify
the outstanding issues.</obo:IAO_0000115>
+ <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
+ <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
+ </owl:NamedIndividual>
+
+
+
+ 
+
+ <rdf:Description>
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#AllDifferent"/>
+ <owl:distinctMembers rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000120"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000121"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000122"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000123"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000124"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000125"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000423"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000428"/>
+ </owl:distinctMembers>
+ </rdf:Description>
+ <rdf:Description>
+ <rdf:type
rdf:resource="http://www.w3.org/2002/07/owl#AllDifferent"/>
+ <owl:distinctMembers rdf:parseType="Collection">
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000226"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000227"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000228"/>
+ <rdf:Description
rdf:about="http://purl.obolibrary.org/obo/IAO_0000229"/>
+ </owl:distinctMembers>
+ </rdf:Description>
+</rdf:RDF>
+
+
+
+
+

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