[information-artifact-ontology] r711 committed - Summary: fix broken entity reference that led to error when loading in...

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Revision: 711
Author: alanrut...@gmail.com
Date: Mon Sep 15 18:21:11 2014 UTC
Log: Summary: fix broken entity reference that led to error when
loading into protege

Was &obo: should be &obo;

https://code.google.com/p/information-artifact-ontology/source/detail?r=711

Deleted:
/trunk/src/ontology/iao2-main.owl

=======================================
--- /trunk/src/ontology/iao2-main.owl Mon Jun 9 04:00:35 2014 UTC
+++ /dev/null
@@ -1,2919 +0,0 @@
-<?xml version="1.0"?>
-
-
-<!DOCTYPE rdf:RDF [
- <!ENTITY bfo "http://www.ifomis.org/bfo/1.1#" >
- <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
- <!ENTITY obo "http://purl.obolibrary.org/obo/" >
- <!ENTITY swrl "http://www.w3.org/2003/11/swrl#" >
- <!ENTITY owl2 "http://www.w3.org/2006/12/owl2#" >
- <!ENTITY swrlb "http://www.w3.org/2003/11/swrlb#" >
- <!ENTITY OBO_REL "http://purl.org/obo/owl/OBO_REL#" >
- <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
- <!ENTITY owl2xml "http://www.w3.org/2006/12/owl2-xml#" >
- <!ENTITY snap "http://www.ifomis.org/bfo/1.1/snap#" >
- <!ENTITY iao "http://purl.obolibrary.org/obo/iao/" >
- <!ENTITY span "http://www.ifomis.org/bfo/1.1/span#" >
- <!ENTITY ro "http://www.obofoundry.org/ro/ro.owl#" >
- <!ENTITY daml "http://www.daml.org/2001/03/daml+oil#" >
- <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
- <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
- <!ENTITY oboInOwl "http://www.geneontology.org/formats/oboInOwl#" >
- <!ENTITY protege "http://protege.stanford.edu/plugins/owl/protege#" >
- <!ENTITY xsp "http://www.owl-ontologies.com/2005/08/07/xsp.owl#" >
- <!ENTITY
p1 "http://purl.obolibrary.org/obo/iao/ontology-metadata.owl#" >
- <!ENTITY
obo2 "http://purl.obolibrary.org/obo/iao/dev/iao-main.owl#http://purl.obolibrary.org/obo/"
>
-]>
-
-
-<rdf:RDF xmlns="&obo;iao/dev/iao-main.owl#"
- xml:base="&obo;iao/dev/iao-main.owl"
- xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
- xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
- xmlns:xsp="http://www.owl-ontologies.com/2005/08/07/xsp.owl#"
- xmlns:iao="&obo;iao/"
- xmlns:p1="&obo;iao/ontology-metadata.owl#"
- xmlns:snap="http://www.ifomis.org/bfo/1.1/snap#"
- xmlns:daml="http://www.daml.org/2001/03/daml+oil#"
- xmlns:owl2="http://www.w3.org/2006/12/owl2#"
- xmlns:bfo="http://www.ifomis.org/bfo/1.1#"
- xmlns:obo2="&obo;iao/dev/iao-main.owl#&obo;"
- xmlns:obo="http://purl.obolibrary.org/obo/"
- xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
- xmlns:swrl="http://www.w3.org/2003/11/swrl#"
- xmlns:owl2xml="http://www.w3.org/2006/12/owl2-xml#"
- xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
- xmlns:owl="http://www.w3.org/2002/07/owl#"
- xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#"
- xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
- xmlns:span="http://www.ifomis.org/bfo/1.1/span#">
- <owl:Ontology rdf:about="&obo;iao/dev/iao2-main.owl">
- <protege:defaultLanguage
rdf:datatype="&xsd;string">en</protege:defaultLanguage>
- <owl:versionInfo xml:lang="en">$Revision$</owl:versionInfo>
- <rdfs:comment xml:lang="en">An information artifact is, loosely, a
generically dependent continuant that is created as the result of one or
more intentional processes. Examples: uniprot, the english language, the
contents of this document or a printout of it, the temperature measurements
from a weather balloon. For more information, see the project home page at
http://code.google.com/p/information-artifact-ontology/</rdfs:comment>
- <rdfs:seeAlso
rdf:resource="http://code.google.com/p/information-artifact-ontology/"/>
- <owl:imports
rdf:resource="http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl"/>
- <owl:imports rdf:resource="&obo;bfo.owl"/>
- 
- 
- 
- </owl:Ontology>
-
-
-
- 
-
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&protege;defaultLanguage"/>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&obo;IAO_0000111">
- <rdfs:label xml:lang="en">editor preferred term</rdfs:label>
- </owl:AnnotationProperty>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&obo;IAO_0000113">
- <rdfs:label xml:lang="en">in branch</rdfs:label>
- </owl:AnnotationProperty>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&obo;IAO_0000114">
- <rdfs:label xml:lang="en">has curation status</rdfs:label>
- </owl:AnnotationProperty>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&obo;IAO_0000115">
- <rdfs:label xml:lang="en">definition</rdfs:label>
- </owl:AnnotationProperty>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&obo;IAO_0000116">
- <rdfs:label xml:lang="en">editor note</rdfs:label>
- </owl:AnnotationProperty>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&obo;IAO_0000117">
- <rdfs:label xml:lang="en">term editor</rdfs:label>
- </owl:AnnotationProperty>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&obo;IAO_0000118">
- <rdfs:label xml:lang="en">alternative term</rdfs:label>
- </owl:AnnotationProperty>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&obo;IAO_0000119">
- <rdfs:label xml:lang="en">definition source</rdfs:label>
- </owl:AnnotationProperty>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&obo;IAO_0000231">
- <rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
- </owl:AnnotationProperty>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&obo;IAO_0000412">
- <rdfs:label xml:lang="en">imported from</rdfs:label>
- </owl:AnnotationProperty>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&obo;IAO_0000604">
- <rdfs:label rdf:datatype="&xsd;string">retired from use as
of</rdfs:label>
- <obo:IAO_0000117 rdf:datatype="&xsd;string">Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000116 rdf:datatype="&xsd;string">In OWL 2 add
AnnotationPropertyRange xsd:dateTimeStamp</obo:IAO_0000116>
- <obo:IAO_0000115 rdf:datatype="&xsd;string">relates a class of
CRID to the date after which further instances should not be made,
according to the central authority</obo:IAO_0000115>
- <obo:IAO_0000111 xml:lang="en">retired from use as
of</obo:IAO_0000111>
- </owl:AnnotationProperty>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&rdfs;comment"/>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&rdfs;label"/>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&rdfs;seeAlso"/>
-
-
-
- 
-
- <owl:AnnotationProperty rdf:about="&owl;versionInfo"/>
-
-
-
- 
-
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000039">
- <rdf:type rdf:resource="&owl;FunctionalProperty"/>
- <rdfs:label xml:lang="en">has measurement unit label</rdfs:label>
- <rdfs:range rdf:resource="&obo;IAO_0000003"/>
- <rdfs:subPropertyOf rdf:resource="&ro;has_part"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000127">
- <rdfs:label xml:lang="en">structures information with</rdfs:label>
- <obo:IAO_0000116>What _other_ sorts of relations can obtain
between information artifacts.
-
-Is it information structure equivalentTo: Information artifact and has
part some a that structures information with some information
artifact?</obo:IAO_0000116>
- <rdfs:comment>a structures information with b if a is an
information artifact and b is an information artifact and there is an
information structure that has part a and has part b</rdfs:comment>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000136">
- <rdfs:label xml:lang="en">is about</rdfs:label>
- <obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. Following
discussion with Jonathan Rees, and introduction of "mentions"
relation. Weaken the is_about relationship to be primitive.
-
-We will try to build it back up by elaborating the various subproperties
that are more precisely defined.
-
-Some currently missing phenomena that should be considered
"about" are predications - "The only person who knows the
answer is sitting beside me" , Allegory, Satire, and other literary
forms that can be topical without explicitly mentioning the
topic.</obo:IAO_0000116>
- <obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000
years of philosophy</obo:IAO_0000119>
- <obo:IAO_0000112 xml:lang="en">This document is about information
artifacts and their representations</obo:IAO_0000112>
- <obo:IAO_0000115 xml:lang="en">is_about is a (currently) primitive
relation that relates an information artifact to an
entity.</obo:IAO_0000115>
- <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
- <rdfs:domain rdf:resource="&obo;IAO_0000030"/>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000142">
- <rdfs:label xml:lang="en">mentions</rdfs:label>
- <obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. P4 RC1
munges our GCI so remove it for now: mentions some entity equivalentTo
has_part some ('generically denotes' some
entity)</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg: Add this
relation following conversation with Jonathan Rees that N&S GCI for
is_about was too strong. Really it was simply sufficient. To effect this
change we introduce this relation, which is subproperty of is_about, and
have previous GCI use this relation "mentions" in it's
(logical) definition</obo:IAO_0000116>
- <obo:IAO_0000115 xml:lang="en">An information artifact IA mentions
an entity E exactly when it has a component/part that denotes
E</obo:IAO_0000115>
- <obo:IAO_0000117 xml:lang="en">PERSON: Jonathan
Rees</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">Person: Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
- <rdfs:subPropertyOf rdf:resource="&obo;IAO_0000136"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000219">
- <rdfs:label xml:lang="en">denotes</rdfs:label>
- <rdfs:comment xml:lang="en"></rdfs:comment>
- <obo:IAO_0000116 xml:lang="en">2009-11-10 Alan Ruttenberg. Old
definition said the following to emphasize the generic nature of this
relation. We no longer have 'specifically denotes', which would
have been primitive, so make this relation primitive.
-g denotes r =def
-r is a portion of reality
-there is some c that is a concretization of g
-every c that is a concretization of g specifically denotes
r</obo:IAO_0000116>
- <obo:IAO_0000112 xml:lang="en">A person's name denotes the
person. A variable name in a computer program denotes some piece of memory.
Lexically equivalent strings can denote different things, for instance
"Alan" can denote different people. In each case of use, there is
a case of the denotation relation obtaining, between "Alan" and
the person that is being named.</obo:IAO_0000112>
- <obo:IAO_0000119 xml:lang="en">Conversations with Barry Smith,
Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James
Malone, Bill Hogan</obo:IAO_0000119>
- <obo:IAO_0000115 xml:lang="en">denotes is a primitive,
instance-level, relation obtaining between an information content entity
and some portion of reality. Denotation is what happens when someone
creates an information content entity E in order to specifically refer to
something. The only relation between E and the thing is that E can be used
to 'pick out' the thing. This relation connects those two
together. Freedictionary.com sense 3: To signify directly; refer to
specifically</obo:IAO_0000115>
- <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
- <rdfs:subPropertyOf rdf:resource="&obo;IAO_0000136"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000221">
- <rdfs:label xml:lang="en">is quality measurement of</rdfs:label>
- <obo:IAO_0000116 xml:lang="en">8/6/2009 Alan Ruttenberg: The
strategy is to be rather specific with this relationship. There are other
kinds of measurements that are not of qualities, such as those that measure
time. We will add these as separate properties for the moment and see about
generalizing later</obo:IAO_0000116>
- <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000116 xml:lang="en">From the second IAO workshop [Alan
Ruttenberg 8/6/2009: not completely current, though bringing in comparison
is probably important]
-
-This one is the one we are struggling with at the moment. The issue is
what a measurement measures. On the one hand saying that it measures the
quality would include it "measuring" the bearer = referring to
the bearer in the measurement. However this makes comparisons of two
different things not possible. On the other hand not having it inhere in
the bearer, on the face of it, breaks the audit trail.
-
-Werner suggests a solution based on "Magnitudes" a proposal for
which we are awaiting details.
---
-From the second IAO workshop, various comments, [commented on by Alan
Ruttenberg 8/6/2009]
-
-unit of measure is a quality, e.g. the length of a ruler.
-
-[We decided to hedge on what units of measure are, instead talking about
measurement unit labels, which are the information content entities that
are about whatever measurement units are. For IAO we need that information
entity in any case. See the term measurement unit label]
-
-[Some struggling with the various subflavors of is_about. We subsequently
removed the relation represents, and describes until and only when we have
a better theory]
-
-a represents b means either a denotes b or a describes
-
-describe:
-a describes b means a is about b and a allows an inference of at least one
quality of b
-
-We have had a long discussion about denotes versus
describes.</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">From the second IAO workshop: An
attempt at tieing the quality to the measurement datum more carefully.
-
-a is a magnitude means a is a determinate quality particular inhering in
some bearer b existing at a time t that can be represented/denoted by an
information content entity e that has parts denoting a unit of measure, a
number, and b. The unit of measure is an instance of the determinable
quality.</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">From the second meeting on IAO:
-
-An attempt at defining assay using Barry's "reliability"
wording
-
-assay:
-process and has_input some material entity
-and has_output some information content entity
-and which is such that instances of this process type reliably generate
-outputs that describes the input.</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">This one is the one we are
struggling with at the moment. The issue is what a measurement measures. On
the one hand saying that it measures the quality would include it
"measuring" the bearer = referring to the bearer in the
measurement. However this makes comparisons of two different things not
possible. On the other hand not having it inhere in the bearer, on the face
of it, breaks the audit trail.
-
-Werner suggests a solution based on "Magnitudes" a proposal for
which we are awaiting details.</obo:IAO_0000116>
- <obo:IAO_0000115 xml:lang="en">m is a quality measurement of q at
t when
-q is a quality
-there is a measurement process p that has specified output m, a
measurement datum, that is about q</obo:IAO_0000115>
- <rdfs:domain rdf:resource="&obo;IAO_0000109"/>
- <rdfs:subPropertyOf rdf:resource="&obo;IAO_0000136"/>
- <rdfs:range rdf:resource="&snap;Quality"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000407">
- <rdf:type rdf:resource="&owl;FunctionalProperty"/>
- <rdfs:label xml:lang="en">has coordinate unit label</rdfs:label>
- <rdfs:comment xml:lang="en">relating a cartesian spatial
coordinate datum to a unit label that together with the values represent a
point</rdfs:comment>
- <rdfs:domain rdf:resource="&obo;IAO_0000400"/>
- <rdfs:range rdf:resource="&obo;UO_0000001"/>
- <rdfs:subPropertyOf rdf:resource="&ro;has_part"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000413">
- <rdfs:label xml:lang="en">is duration of</rdfs:label>
- <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">relates a process to a
time-measurement-datum that represents the duration of the
process</obo:IAO_0000115>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
- <rdfs:subPropertyOf rdf:resource="&obo;IAO_0000136"/>
- <rdfs:domain rdf:resource="&obo;IAO_0000416"/>
- <rdfs:range rdf:resource="&span;Process"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000417">
- <rdfs:label xml:lang="en">is quality measured as</rdfs:label>
- <obo:IAO_0000116 xml:lang="en">2009/10/19 Alan Ruttenberg. Named
'junk' relation useful in restrictions, but not a real instance
relationship</obo:IAO_0000116>
- <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">inverse of the relation of is
quality measurement of</obo:IAO_0000115>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
- <owl:inverseOf rdf:resource="&obo;IAO_0000221"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000418">
- <rdfs:label xml:lang="en">is quality specification of</rdfs:label>
- <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">Person:Bjoern
Peters</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">a relation between a data item and
a quality of a material entity where the material entity is the specified
output of a material transformation which achieves an objective
specification that indicates the intended value of the specified
quality.</obo:IAO_0000115>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
- <rdfs:subPropertyOf rdf:resource="&obo;IAO_0000136"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000419">
- <rdfs:label xml:lang="en">quality is specified as</rdfs:label>
- <obo:IAO_0000116 xml:lang="en">2009/10/19 Alan Ruttenberg. Named
'junk' relation useful in restrictions, but not a real instance
relationship</obo:IAO_0000116>
- <obo:IAO_0000117 xml:lang="en">Person:Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">Person:Bjoern
Peters</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">inverse of the relation of is
quality specification of</obo:IAO_0000115>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
- <owl:inverseOf rdf:resource="&obo;IAO_0000418"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000581">
- <rdf:type rdf:resource="&owl;FunctionalProperty"/>
- <rdfs:label xml:lang="en">has time stamp</rdfs:label>
- <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">relates a time stamped measurement
datum to the time measurement datum that denotes the time when the
measurement was taken</obo:IAO_0000115>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000123"/>
- <rdfs:range rdf:resource="&obo;IAO_0000416"/>
- <rdfs:domain rdf:resource="&obo;IAO_0000582"/>
- <rdfs:subPropertyOf rdf:resource="&ro;has_part"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;IAO_0000583">
- <rdfs:label xml:lang="en">has measurement datum</rdfs:label>
- <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">relates a time stamped measurement
datum to the measurement datum that was measured</obo:IAO_0000115>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000123"/>
- <rdfs:domain rdf:resource="&obo;IAO_0000582"/>
- <rdfs:subPropertyOf rdf:resource="&ro;has_part"/>
- <rdfs:range>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description rdf:about="&obo;IAO_0000109"/>
- <owl:Class>
- <owl:complementOf rdf:resource="&obo;IAO_0000416"/>
- </owl:Class>
- </owl:intersectionOf>
- </owl:Class>
- </rdfs:range>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;OBI_0000293"/>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;OBI_0000294">
- <rdfs:label xml:lang="en">is_concretization_of</rdfs:label>
- <obo:IAO_0000115 xml:lang="en">a relationship between a
generically dependent continuant and at least one specifically dependent
continuant upon which it existentially depends</obo:IAO_0000115>
- <rdfs:range rdf:resource="&snap;GenericallyDependentContinuant"/>
- <rdfs:domain rdf:resource="&snap;SpecificallyDependentContinuant"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;OBI_0000297">
- <rdfs:label xml:lang="en">is_concretized_as</rdfs:label>
- <obo:IAO_0000115 xml:lang="en">a relationship between a
generically dependent continuant and at least one specifically dependent
continuant upon which it existentially depends</obo:IAO_0000115>
- <owl:inverseOf rdf:resource="&obo;OBI_0000294"/>
- <rdfs:domain rdf:resource="&snap;GenericallyDependentContinuant"/>
- <rdfs:range rdf:resource="&snap;SpecificallyDependentContinuant"/>
- </owl:ObjectProperty>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&obo;OBI_0000299"/>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&OBO_REL;bearer_of"/>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&ro;has_part"/>
-
-
-
- 
-
- <owl:ObjectProperty rdf:about="&ro;part_of">
- <obo:IAO_0000116 xml:lang="en">There is controversy about this
relation intended to represent the relation between some arbitrary physical
thing that is used as a represention/proxy/pointer to something
else</obo:IAO_0000116>
- </owl:ObjectProperty>
-
-
-
- 
-
-
-
-
- 
-
- <owl:DatatypeProperty rdf:about="&obo;IAO_0000004">
- <rdf:type rdf:resource="&owl;FunctionalProperty"/>
- <rdfs:label xml:lang="en">has measurement value</rdfs:label>
- <rdfs:domain rdf:resource="&obo;IAO_0000032"/>
- <rdfs:range rdf:resource="&xsd;float"/>
- </owl:DatatypeProperty>
-
-
-
- 
-
- <owl:DatatypeProperty rdf:about="&obo;IAO_0000404">
- <rdf:type rdf:resource="&owl;FunctionalProperty"/>
- <rdfs:label xml:lang="en">has x coordinate value</rdfs:label>
- <rdfs:domain rdf:resource="&obo;IAO_0000400"/>
- <rdfs:range rdf:resource="&xsd;float"/>
- </owl:DatatypeProperty>
-
-
-
- 
-
- <owl:DatatypeProperty rdf:about="&obo;IAO_0000405">
- <rdf:type rdf:resource="&owl;FunctionalProperty"/>
- <rdfs:label xml:lang="en">has z coordinate value</rdfs:label>
- <rdfs:domain rdf:resource="&obo;IAO_0000400"/>
- <rdfs:range rdf:resource="&xsd;float"/>
- </owl:DatatypeProperty>
-
-
-
- 
-
- <owl:DatatypeProperty rdf:about="&obo;IAO_0000406">
- <rdf:type rdf:resource="&owl;FunctionalProperty"/>
- <rdfs:label xml:lang="en">has y coordinate value</rdfs:label>
- <rdfs:domain rdf:resource="&obo;IAO_0000400"/>
- <rdfs:range rdf:resource="&xsd;float"/>
- </owl:DatatypeProperty>
-
-
-
- 
-
-
-
-
- 
-
- <rdf:Description rdf:about="&obo;BFO_0000020">
- <owl:disjointWith rdf:resource="&obo;IAO_0000108"/>
- </rdf:Description>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;GAZ_00000448">
- <rdfs:subClassOf rdf:resource="&obo;BFO_0000029"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000001">
- <rdfs:label xml:lang="en">conditional specification</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000033"/>
- <obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
- <obo:IAO_0000119 xml:lang="en">OBI_0000349</obo:IAO_0000119>
- <obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess
Branch</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">a directive information entity that
specifies what should happen if the trigger condition is
fulfilled</obo:IAO_0000115>
- <obo:IAO_0000111 xml:lang="en">conditional
specification</obo:IAO_0000111>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000003">
- <rdfs:label xml:lang="en">measurement unit label</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000009"/>
- <obo:IAO_0000116 xml:lang="en">2009-03-16: provenance: a term
measurement unit was
-proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and
-Cristian Cocos, and subsequently moved to IAO where the objective for
-which the original term was defined was satisfied with the definition
-of this, different, term.</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">2009-03-16: review of this term
done during during the OBI workshop winter 2009 and the current definition
was considered acceptable for use in OBI. If there is a need to modify this
definition please notify OBI.</obo:IAO_0000116>
- <obo:IAO_0000115 xml:lang="en">A measurement unit label is as a
label that is part of a scalar measurement datum and denotes a unit of
measure.</obo:IAO_0000115>
- <obo:IAO_0000112 xml:lang="en">Examples of measurement unit labels
are liters, inches, weight per volume.</obo:IAO_0000112>
- <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Melanie
Courtot</obo:IAO_0000117>
- <obo:IAO_0000111 xml:lang="en">measurement unit
label</obo:IAO_0000111>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000005">
- <rdfs:label xml:lang="en">objective specification</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000033"/>
- <obo:IAO_0000116 xml:lang="en">2009-03-16: original definition
when imported from OBI read: "objective is an non realizable
information entity which can serve as that proper part of a plan towards
which the realization of the plan is directed."</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">2014-03-31: In the example of usage
("In the protocol of a ChIP assay the objective specification says to
identify protein and DNA interaction") there is a protocol which is
the ChIP assay protocol. In addition to being concretized on paper, the
protocol can be concretized as a realizable entity, such as a plan that
inheres in a person. The objective specification is the part that says that
some protein and DNA interactions are identified. This is a specification
of a process endpoint: the boundary in the process before which they are
not identified and after which they are. During the realization of the
plan, the goal is to get to the point of having the interactions, and
participants in the realization of the plan try to do
that.</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">Answers the question, why did you
do this experiment?</obo:IAO_0000116>
- <obo:IAO_0000112 xml:lang="en">In the protocol of a ChIP assay the
objective specification says to identify protein and DNA
interaction.</obo:IAO_0000112>
- <obo:IAO_0000119 xml:lang="en">OBI Plan and Planned Process/Roles
Branch</obo:IAO_0000119>
- <obo:IAO_0000119 xml:lang="en">OBI_0000217</obo:IAO_0000119>
- <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Barry
Smith</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Bjoern
Peters</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Jennifer
Fostel</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">a directive information entity that
describes an intended process endpoint. When part of a plan specification
the concretization is realized in a planned process in which the bearer
tries to effect the world so that the process endpoint is
achieved.</obo:IAO_0000115>
- <obo:IAO_0000118 xml:lang="en">goal specification</obo:IAO_0000118>
- <obo:IAO_0000111 xml:lang="en">objective
specification</obo:IAO_0000111>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000006">
- <rdfs:label xml:lang="en">narrative object</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000030"/>
- <obo:IAO_0000116 xml:lang="en">2009-08-10 Alan Ruttenberg: Larry
Hunter suggests that this be obsoleted and replaced by 'textual
entity' and 'figure'. Alan restored as there are OBI
dependencies and this merits further discussion</obo:IAO_0000116>
- <obo:IAO_0000115 xml:lang="en">A narrative object is an
information content entity that is a set of propositions.</obo:IAO_0000115>
- <obo:IAO_0000112 xml:lang="en">Examples of narrative objects are
reports, journal articles, and patents submission.</obo:IAO_0000112>
- <obo:IAO_0000119 xml:lang="en">OBI_0000013</obo:IAO_0000119>
- <obo:IAO_0000116 xml:lang="en">agree - DENRIE. Issue(alan) do we
only mean text? What about a story told by mime. Does music count? (no)
what about an oral report. Regarding definition, saying it is a set of
propositions means we loose the idea that wording matters. Maybe adjust
saying a narrative object has some relationshop to a set of
propositions</obo:IAO_0000116>
- <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
- <obo:IAO_0000111 xml:lang="en">narrative object</obo:IAO_0000111>
- <obo:IAO_0000117 xml:lang="en">person:Chris
Stoeckert</obo:IAO_0000117>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000124"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000007">
- <rdfs:label xml:lang="en">action specification</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000033"/>
- <obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000119 xml:lang="en">OBI Plan and Planned Process
branch</obo:IAO_0000119>
- <obo:IAO_0000112 xml:lang="en">Pour the contents of flask 1 into
flask 2</obo:IAO_0000112>
- <obo:IAO_0000115 xml:lang="en">a directive information entity that
describes an action the bearer will take</obo:IAO_0000115>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000009">
- <rdfs:label xml:lang="en">datum label</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000030"/>
- <obo:IAO_0000232>9/22/11 BP: changed the rdfs:label for this class
from 'label' to 'datum label' to convey that this class
is not intended to cover all kinds of labels (stickers, radiolabels, etc.),
and not even all kind of textual labels, but rather the kind of labels
occuring in a datum.
-</obo:IAO_0000232>
- <obo:IAO_0000115 xml:lang="en">A label is a symbol that is part of
some other datum and is used to either partially define the denotation of
that datum or to provide a means for identifying the datum as a member of
the set of data with the same label</obo:IAO_0000115>
- <obo:IAO_0000117 xml:lang="en">GROUP: IAO</obo:IAO_0000117>
- <obo:IAO_0000111 xml:lang="en">datum label</obo:IAO_0000111>
- <obo:IAO_0000116
xml:lang="en">http://www.golovchenko.org/cgi-bin/wnsearch?q=label#4n</obo:IAO_0000116>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000123"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000010">
- <rdfs:label xml:lang="en">software</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000104"/>
- <obo:IAO_0000119 xml:lang="en">GROUP: OBI</obo:IAO_0000119>
- <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Bjoern
Peters</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Chris
Stoeckert</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Melanie
Courtot</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">Software is a plan specification
composed of a series of instructions that can be
-interpreted by or directly executed by a processing unit.</obo:IAO_0000115>
- <obo:IAO_0000116 xml:lang="en">see sourceforge tracker discussion
at
http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178</obo:IAO_0000116>
- <obo:IAO_0000111 xml:lang="en">software</obo:IAO_0000111>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000013">
- <rdfs:label xml:lang="en">journal article</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000088"/>
- <obo:IAO_0000112 xml:lang="en">Examples are articles published in
the journals, Nature and Science. The content can often be cited by
reference to a paper based encoding, e.g. Authors, Title of article,
Journal name, date or year of publication, volume and page
number.</obo:IAO_0000112>
- <obo:IAO_0000119 xml:lang="en">OBI_0000159</obo:IAO_0000119>
- <obo:IAO_0000115 xml:lang="en">a report that is published in a
journal</obo:IAO_0000115>
- <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
- <obo:IAO_0000111 xml:lang="en">journal article</obo:IAO_0000111>
- <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">person:Chris
Stoeckert</obo:IAO_0000117>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000015">
- <rdfs:label xml:lang="en">information carrier</rdfs:label>
- <owl:equivalentClass>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description rdf:about="&obo;BFO_0000019"/>
- <owl:Restriction>
- <owl:onProperty rdf:resource="&obo;BFO_0000164"/>
- <owl:someValuesFrom
rdf:resource="&obo;IAO_0000030"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:equivalentClass>
- <obo:IAO_0000116>2014-03-10: We are not certain that all
information carriers are qualities. There was a discussion of dropping
it.</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">12/15/09: There is a concern that
some ways that carry information may be processes rather than qualities,
such as in a 'delayed wave carrier'.</obo:IAO_0000116>
- <obo:IAO_0000115 xml:lang="en">A quality of an information bearer
that imparts the information content</obo:IAO_0000115>
- <obo:IAO_0000112 xml:lang="en">In the case of a printed paperback
novel the physicality of the ink and of the paper form part of the
information bearer. The qualities of appearing black and having a certain
pattern for the ink and appearing white for the paper form part of the
information carrier in this case.</obo:IAO_0000112>
- <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000
years of philosophy</obo:IAO_0000119>
- <obo:IAO_0000111 xml:lang="en">information
carrier</obo:IAO_0000111>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000017">
- <rdfs:label xml:lang="en">model number</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000028"/>
- <obo:IAO_0000115 xml:lang="en">A model number is an information
content entity specifically borne by catalogs, design specifications,
advertising materials, inventory systems and similar that is about
manufactured objects of the same class. The model number is an alternative
term for the class. The manufactered objects may or may not also bear the
model number. Model numbers can be encoded in a variety of other
information objects, such as bar codes, numerals, or patterns of
dots.</obo:IAO_0000115>
- <obo:IAO_0000117 xml:lang="en">Person: Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000116 xml:lang="en">manufactered items may have more
than one model number, sometimes by rebranding, or because companies are
sold and the products issued new model numbers</obo:IAO_0000116>
- <obo:IAO_0000111 xml:lang="en">model number</obo:IAO_0000111>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000025">
- <rdfs:label xml:lang="en">programming language</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000104"/>
- <obo:IAO_0000115 xml:lang="en">A language in which source code is
written that is intended to be executed/run by a software interpreter.
Programming languages are ways to write instructions that specify what to
do, and sometimes, how to do it.</obo:IAO_0000115>
- <obo:IAO_0000119 xml:lang="en">OBI_0000058</obo:IAO_0000119>
- <obo:IAO_0000112 xml:lang="en">R, Perl, Java</obo:IAO_0000112>
- <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
- <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">person:Chris
Stoeckert</obo:IAO_0000117>
- <obo:IAO_0000111 xml:lang="en">programming
language</obo:IAO_0000111>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000027">
- <rdfs:label xml:lang="en">data item</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000030"/>
- <obo:IAO_0000116 xml:lang="en">2009-03-16: data item deliberatly
ambiguous: we merged data set and datum to be one entity, not knowing how
to define singular versus plural. So data item is more general than
datum.</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">2009-03-16: removed datum as
alternative term as datum specifically refers to singular form, and is thus
not an exact synonym.</obo:IAO_0000116>
- <obo:IAO_0000116>2014-03-31: See discussion at
http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">2/2/2009 Alan and Bjoern discussing
FACS run output data. This is a data item because it is about the cell
population. Each element records an event and is typically further composed
a set of measurment data items that record the fluorescent intensity
stimulated by one of the lasers.</obo:IAO_0000116>
- <obo:IAO_0000112 xml:lang="en">Data items include counts of
things, analyte concentrations, and statistical summaries.</obo:IAO_0000112>
- <obo:IAO_0000116 xml:lang="en">JAR: datum -- well, this will
be very tricky to define, but maybe some
-information-like stuff that might be put into a computer and that is
-meant, by someone, to denote and/or to be interpreted by some
-process... I would include lists, tables, sentences... I think I might
-defer to Barry, or to Brian Cantwell Smith
-
-JAR: A data item is an approximately justified approximately true
approximate belief</obo:IAO_0000116>
- <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Chris
Stoeckert</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Jonathan
Rees</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">a data item is an information
content entity that is intended to be a truthful statement about something
(modulo, e.g., measurement precision or other systematic errors) and is
constructed/acquired by a method which reliably tends to produce
(approximately) truthful statements.</obo:IAO_0000115>
- <obo:IAO_0000118 xml:lang="en">data</obo:IAO_0000118>
- <obo:IAO_0000111 xml:lang="en">data item</obo:IAO_0000111>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000028">
- <rdfs:label xml:lang="en">symbol</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000030"/>
- <obo:IAO_0000116 xml:lang="en">20091104, MC: this needs work and
will most probably change</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">2014-03-31: We would like to have a
deeper analysis of 'mark' and 'sign' in the future (see
https://code.google.com/p/information-artifact-ontology/issues/detail?id=154).</obo:IAO_0000116>
- <obo:IAO_0000115 xml:lang="en">An information content entity that
is a mark(s) or character(s) used as a conventional representation of
another entity.</obo:IAO_0000115>
- <obo:IAO_0000117 xml:lang="en">PERSON: James A.
Overton</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Jonathan
Rees</obo:IAO_0000117>
- <obo:IAO_0000112 xml:lang="en">a serial number such as
"12324X"</obo:IAO_0000112>
- <obo:IAO_0000112 xml:lang="en">a stop sign</obo:IAO_0000112>
- <obo:IAO_0000112 xml:lang="en">a written proper name such as
"OBI"</obo:IAO_0000112>
- <obo:IAO_0000119 xml:lang="en">based on Oxford English
Dictionary</obo:IAO_0000119>
- <obo:IAO_0000111 xml:lang="en">symbol</obo:IAO_0000111>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000029">
- <rdfs:label xml:lang="en">numeral</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000028"/>
- <obo:IAO_0000115 xml:lang="en">A symbol that denotes a
number.</obo:IAO_0000115>
- <obo:IAO_0000117 xml:lang="en">PERSON: Jonathan
Rees</obo:IAO_0000117>
- <obo:IAO_0000111 xml:lang="en">numeral</obo:IAO_0000111>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000030">
- <rdfs:label xml:lang="en">information content entity</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000105"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="&obo;IAO_0000136"/>
- <owl:minCardinality
rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality>
- </owl:Restriction>
- </rdfs:subClassOf>
- <owl:disjointWith rdf:resource="&obo;IAO_0000107"/>
- <obo:IAO_0000116 xml:lang="en">2014-03-10: The use of
"thing" is intended to be general enough to include universals
and configurations (see
https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).</obo:IAO_0000116>
- <obo:IAO_0000115 xml:lang="en">A generically dependent continuant
that is about some thing.</obo:IAO_0000115>
- <obo:IAO_0000112 xml:lang="en">Examples of information content
entites include journal articles, data, graphical layouts, and
graphs.</obo:IAO_0000112>
- <obo:IAO_0000119 xml:lang="en">OBI_0000142</obo:IAO_0000119>
- <obo:IAO_0000117 xml:lang="en">PERSON: Chris
Stoeckert</obo:IAO_0000117>
- <obo:IAO_0000117>Person: Alan Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000111 xml:lang="en">information content
entity</obo:IAO_0000111>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
- </owl:Class>
- <owl:Axiom>
- <obo:IAO_0000116>But what about the cases where marks become
information content entities by an act. For example the binding of a
variable name to a value. Or when I say "let's suppose this
square is our family?"
-
-Are all such cases equivalent to variable bindings?
-
-Maybe this doesn't happen - maybe acts are on specific dependents?
-
-Otherwise we have to qualify the disjointness as at any time or at all
times.</obo:IAO_0000116>
- <owl:annotatedSource rdf:resource="&obo;IAO_0000030"/>
- <owl:annotatedTarget rdf:resource="&obo;IAO_0000107"/>
- <owl:annotatedProperty rdf:resource="&owl;disjointWith"/>
- </owl:Axiom>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000031">
- <rdfs:label xml:lang="en">integer numeral</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000029"/>
- <obo:IAO_0000117 xml:lang="en">PERSON: Jonathan
Rees</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">a numeral that denotes an
integer</obo:IAO_0000115>
- <obo:IAO_0000111 xml:lang="en">integer numeral</obo:IAO_0000111>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000032">
- <rdfs:label xml:lang="en">scalar measurement datum</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000109"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="&obo;IAO_0000004"/>
- <owl:minCardinality
rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="&obo;IAO_0000039"/>
- <owl:minCardinality
rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality>
- </owl:Restriction>
- </rdfs:subClassOf>
- <obo:IAO_0000112 xml:lang="en">10 feet. 3 ml.</obo:IAO_0000112>
- <obo:IAO_0000116 xml:lang="en">2009-03-16: we decided to keep
datum singular in scalar measurement datum, as in
-this case we explicitly refer to the singular form</obo:IAO_0000116>
- <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Melanie
Courtot</obo:IAO_0000117>
- <obo:IAO_0000116 xml:lang="en">Would write this as: has_part some
'measurement unit label' and has_part some numeral and has_part
exactly 2, except for the fact that this won't let us take advantage
of OWL reasoning over the numbers. Instead use has measurment value
property to represent the same. Use has measurement unit label (subproperty
of has_part) so we can easily say that there is only one of
them.</obo:IAO_0000116>
- <obo:IAO_0000115 xml:lang="en">a scalar measurement datum is a
measurement datum that is composed of two parts, numerals and a unit
label.</obo:IAO_0000115>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000033">
- <rdfs:label xml:lang="en">directive information entity</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000030"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="&obo;IAO_0000136"/>
- <owl:someValuesFrom rdf:resource="&snap;RealizableEntity"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <obo:IAO_0000116 xml:lang="en">2009-03-16: provenance: a term
realizable information entity was proposed for OBI (OBI_0000337) , edited
by the PlanAndPlannedProcess branch. Original definition was "is the
specification of a process that can be concretized and realized by an
actor" with alternative term "instruction".It has been
subsequently moved to IAO where the objective for which the original term
was defined was satisfied with the definitionof this, different,
term.</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">2013-05-30 Alan Ruttenberg: What
differentiates a directive information entity from an information
concretization is that it can have concretizations that are either
qualities or realizable entities. The concretizations that are realizable
entities are created when an individual chooses to take up the direction,
i.e. has the intention to (try to) realize it.</obo:IAO_0000116>
- <obo:IAO_0000116 xml:lang="en">8/6/2009 Alan Ruttenberg: Changed
label from "information entity about a realizable" after
discussions at ICBO</obo:IAO_0000116>
- <obo:IAO_0000115 xml:lang="en">An information content entity whose
concretizations indicate to their bearer how to realize them in a
process.</obo:IAO_0000115>
- <obo:IAO_0000117 xml:lang="en">PERSON: Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">PERSON: Bjoern
Peters</obo:IAO_0000117>
- <obo:IAO_0000116 xml:lang="en">Werner pushed back on calling it
realizable information entity as it isn't realizable. However this
name isn't right either. An example would be a recipe. The realizable
entity would be a plan, but the information entity isn't about the
plan, it, once concretized, *is* the plan. -Alan</obo:IAO_0000116>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000034">
- <rdfs:label xml:lang="en">time trigger</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000001"/>
- <obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
- <obo:IAO_0000119 xml:lang="en">OBI_0000331</obo:IAO_0000119>
- <obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess
Branch</obo:IAO_0000117>
- <obo:IAO_0000115 xml:lang="en">revisit?</obo:IAO_0000115>
- <obo:IAO_0000111 xml:lang="en">time trigger</obo:IAO_0000111>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000124"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000037">
- <rdfs:label xml:lang="en">dot plot</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000038"/>
- <obo:IAO_0000115 xml:lang="en">A dot plot is a report graph which
is a graphical representation of data where each data point is represented
by a single dot placed on coordinates corresponding to data point values in
particular dimensions.</obo:IAO_0000115>
- <obo:IAO_0000112 xml:lang="en">Dot plot of SSC-H and
FSC-H.</obo:IAO_0000112>
- <obo:IAO_0000119 xml:lang="en">OBI_0000123</obo:IAO_0000119>
- <obo:IAO_0000111 xml:lang="en">dot plot</obo:IAO_0000111>
- <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
- <obo:IAO_0000117 xml:lang="en">person:Allyson
Lister</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">person:Chris
Stoeckert</obo:IAO_0000117>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000002"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000038">
- <rdfs:label xml:lang="en">graph</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000309"/>
- <obo:IAO_0000115 xml:lang="en">A diagram that presents one or more
tuples of information by mapping those tuples in to a two dimensional space
in a non arbitrary way.</obo:IAO_0000115>
- <obo:IAO_0000119 xml:lang="en">OBI_0000240</obo:IAO_0000119>
- <obo:IAO_0000117 xml:lang="en">PERSON: Lawrence
Hunter</obo:IAO_0000117>
- <obo:IAO_0000111 xml:lang="en">graph</obo:IAO_0000111>
- <obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
- <obo:IAO_0000117 xml:lang="en">person:Alan
Ruttenberg</obo:IAO_0000117>
- <obo:IAO_0000117 xml:lang="en">person:Allyson
Lister</obo:IAO_0000117>
- <obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
- </owl:Class>
-
-
-
- 
-
- <owl:Class rdf:about="&obo;IAO_0000055">
- <rdfs:label xml:lang="en">rule</rdfs:label>
- <rdfs:subClassOf rdf:resource="&obo;IAO_0000001"/>
- <obo:IAO_0000116 xml:lang="en">MSI</obo:IAO_0000116>
- <obo:IAO_0000119 xml:lang="en">OBI_0500021</obo:IAO_0000119>
- <obo:IAO_0000117 xml:lang="en">PRS</obo:IAO_0000117>
- <obo:IAO_0000119 xml:lang="en">PRS</obo:IAO_0000119>
- <obo:IAO_0000115 xml:lang="en">a rule is an executable which
guides, defines, restricts actions</obo:IAO_0000115>
***The diff for this file has been truncated for email.***

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