[information-artifact-ontology] r703 committed - update OntoFox input file to use BFO 2.0 classes and generate new impo...

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Jul 10, 2014, 11:52:02 AM7/10/14

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Revision: 703
Author: zheng...@gmail.com
Date: Thu Jul 10 15:51:42 2014 UTC
Log: update OntoFox input file to use BFO 2.0 classes and generate new
import file using OntoFox based on updated OntoFox input file
issue need to be fixed, GAZ term was imported as instance
http://code.google.com/p/information-artifact-ontology/source/detail?r=703

Modified:
/branches/2014-06-13/ontology/OntoFox input/OntoFox-input.txt
/branches/2014-06-13/ontology/import-OBO.owl

=======================================
--- /branches/2014-06-13/ontology/OntoFox input/OntoFox-input.txt Sun Jun
29 03:45:55 2014 UTC
+++ /branches/2014-06-13/ontology/OntoFox input/OntoFox-input.txt Thu Jul
10 15:51:42 2014 UTC
@@ -14,7 +14,7 @@

[Top level source term URIs and target direct superclass URIs]
http://purl.obolibrary.org/obo/OBI_0000011 #planned process
-subClassOf http://www.ifomis.org/bfo/1.1/span#ProcessualEntity
+subClassOf http://purl.obolibrary.org/obo/BFO_0000015
http://purl.obolibrary.org/obo/OBI_0000066 #investigation
subClassOf http://purl.obolibrary.org/obo/OBI_0000011
http://purl.obolibrary.org/obo/OBI_0000471 #study design execution
@@ -43,9 +43,9 @@

[Top level source term URIs and target direct superclass URIs]
http://purl.obolibrary.org/obo/PATO_0000122 #length
-subClassOf http://www.ifomis.org/bfo/1.1/snap#Quality
+subClassOf http://purl.obolibrary.org/obo/BFO_0000019
http://purl.obolibrary.org/obo/PATO_0000125 #mass
-subClassOf http://www.ifomis.org/bfo/1.1/snap#Quality
+subClassOf http://purl.obolibrary.org/obo/BFO_0000019

[Source term retrieval setting]
includeNoIntermediates
@@ -98,7 +98,7 @@

[Top level source term URIs and target direct superclass URIs]
http://purl.obolibrary.org/obo/GAZ_00000448 #geographical location
-subClassOf http://www.ifomis.org/bfo/1.1/snap#Site
+subClassOf http://purl.obolibrary.org/obo/BFO_0000029

[Source term retrieval setting]
includeNoIntermediates
=======================================
--- /branches/2014-06-13/ontology/import-OBO.owl Mon Jun 30 21:31:34 2014
UTC
+++ /branches/2014-06-13/ontology/import-OBO.owl Thu Jul 10 15:51:42 2014
UTC
@@ -18,25 +18,6 @@

///////////////////////////////////////////////////////////////////////////////////////
-->

-
-
-
- 
-
- <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
- <rdfs:label xml:lang="en">editor preferred label</rdfs:label>
- <rdfs:label>editor preferred term</rdfs:label>
- <rdfs:label xml:lang="en">editor preferred term</rdfs:label>
- <obo:IAO_0000111 xml:lang="en">editor preferred
label</obo:IAO_0000111>
- <obo:IAO_0000111>editor preferred term</obo:IAO_0000111>
- <obo:IAO_0000115 xml:lang="en">The concise, meaningful, and
human-friendly name for a class or property preferred by the ontology
developers. (US-English)</obo:IAO_0000115>
- <obo:IAO_0000111 xml:lang="en">editor preferred
term</obo:IAO_0000111>
- </owl:AnnotationProperty>
-
-
-
- 
-
<owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</rdfs:label>
<rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">textual
definition</rdfs:label>
@@ -49,14 +30,29 @@
<obo:IAO_0000111>definition</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
</owl:AnnotationProperty>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
+ <rdfs:label xml:lang="en">imported from</rdfs:label>
+ </owl:AnnotationProperty>
+ <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
+ <rdfs:label xml:lang="en">editor preferred label</rdfs:label>
+ <rdfs:label>editor preferred term</rdfs:label>
+ <rdfs:label xml:lang="en">editor preferred term</rdfs:label>
+ <obo:IAO_0000111>editor preferred term</obo:IAO_0000111>
+ <obo:IAO_0000115 xml:lang="en">The concise, meaningful, and
human-friendly name for a class or property preferred by the ontology
developers. (US-English)</obo:IAO_0000115>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
label</obo:IAO_0000111>
+ <obo:IAO_0000111 xml:lang="en">editor preferred
term</obo:IAO_0000111>
+ </owl:AnnotationProperty>

- 
+ 

- <owl:AnnotationProperty
rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
- <rdfs:label xml:lang="en">imported from</rdfs:label>
- </owl:AnnotationProperty>

@@ -177,7 +173,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000125">
<rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mass</rdfs:label>
<rdfs:subClassOf
rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
- <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A physical quality
that inheres in a bearer by virtue of the proportion of the bearer's
amount of matter.</obo:IAO_0000115>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A physical quality
that inheres in a bearer by virtue of the proportion of the bearer's
amount of matter.</obo:IAO_0000115>
<obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mass</obo:IAO_0000111>
<obo:IAO_0000412
rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
</owl:Class>
@@ -233,10 +229,14 @@



- <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/GAZ_00000448"/>
+ <owl:NamedIndividual
rdf:about="http://purl.obolibrary.org/obo/GAZ_00000448">
+ <rdfs:label
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">geographic
location</rdfs:label>
+ <obo:IAO_0000115
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A reference to a
place on the Earth, by its name or by its geographical
location.</obo:IAO_0000115>
+ <obo:IAO_0000111
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">geographic
location</obo:IAO_0000111>
+ </owl:NamedIndividual>
</rdf:RDF>

-
+

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