icommands: ils works, irm yields: status = -1803000 status = -1803000 HIERARCHY_ERROR

[Blake Fitch]

Any ideas on what I am doing wrong? -Blake

```

bfitch@nyx-login0:~/mrdata-production-deploy/mrdata-ansible-deploy/icommands$ ipwd /MRDataZone/home/mrdata/echtdata/studies/40/experiments/DNW7-QNJC/MR_9.4T_TWIX

bfitch@nyx-login0:~/mrdata-production-deploy/mrdata-ansible-deploy/icommands$ ils /MRDataZone/home/mrdata/echtdata/studies/40/experiments/DNW7-QNJC/MR_9.4T_TWIX:allData#S94Tuebingen#F19835#M1568#D030522#T112656#dzne_ep3d_fmri_test_0p8mm.datallData#S94Tuebingen#F19835#M1568#D030522#T112656#dzne_ep3d_fmri_test_0p8mm.dat_2022-05-24_21:09:36.460022Z

bfitch@nyx-login0:~/mrdata-production-deploy/mrdata-ansible-deploy/icommands$ irm allData#S94Tuebingen#F19835#M1568#D030522#T112656#dzne_ep3d_fmri_test_0p8mm.dat_2022-05-24_21:09:36.460022Z remote addresses: 10.38.12.17 ERROR: rmUtil: rm error for /MRDataZone/home/mrdata/echtdata/studies/40/experiments/DNW7-QNJC/MR_9.4T_TWIX/allData#S94Tuebingen#F19835#M1568#D030522#T112656#dzne_ep3d_fmri_test_0p8mm.dat_2022-05-24_21:09:36.460022Z, status = -1803000 status = -1803000 HIERARCHY_ERROR

fitch@nyx-login0:~/mrdata-production-deploy/mrdata-ansible-deploy/icommands$ irm -f allData#S94Tuebingen#F19835#M1568#D030522#T112656#dzne_ep3d_fmri_test_0p8mm.dat_2022-05-24_21:09:36.460022Z remote addresses: 10.38.12.17 ERROR: rmUtil: rm error for /MRDataZone/home/mrdata/echtdata/studies/40/experiments/DNW7-QNJC/MR_9.4T_TWIX/allData#S94Tuebingen#F19835#M1568#D030522#T112656#dzne_ep3d_fmri_test_0p8mm.dat_2022-05-24_21:09:36.460022Z, status = -406000 status = -406000 Unknown iRODS error

```

[Blake Fitch]

I just noticed I can imv the long file name to 'foo'. But trying to irm foo still brings the hierarchy error.

Is this something about need to remove AVUs before irm?

[Blake Fitch]

Furthermore, I can iput an object into that collection and then irm it just fine. Just not the hold object with the timestamp and real data.

[Terrell Russell]

What does "ils -L" say about the object?

On Tue, May 24, 2022 at 6:05 PM Blake Fitch <blakeg...@gmail.com> wrote:

Furthermore, I can iput an object into that collection and then irm it just fine. Just not the hold object with the timestamp and real data.

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[Terrell Russell]

You may also find more helpful information in the /var/lib/irods/log/rodsLog*

Terrell

[Terrell Russell]

I will also note that your filepaths are not consistent (extra :, some duplicate parts of the filename)...

And, the error code suggests something is not happy with the status of the data object to begin with.

$ ierror 406000
irods error: -406000 LOCKED_DATA_OBJECT_ACCESS

Terrell

 

[Blake Fitch]

Thanks for the quick response.

There was no metadata on the objects. I haven't looked in the logs.

What's odd is I was preparing a command in my test setup -- all docker in a VM. When I tried the irm in the production system, it worked. I've got a script deleting a lot of lines now -- fingers crossed.

I'll have to dig into why the test setup wouldn't do the command.

Best,

Blake