Network Error when opening Workbench

[Audrey]

Hi everyone,

I am installing I2b2 on my own server. I already installed datas and I
am installing PM Cell following the PM Installation Guide.
After loging into Webclient as admin I checked the configuration
(cells, users...). Then, I try to launch the i2b2 workbench on my
client machine. After loging correctly and selecting a project, I have
an error message saying "Trouble with connection to the remote server,
this is often a network error, please try again".
On my server, I can read errors messages such as :


[cador@roogle edu.harvard.i2b2.pm]$ 16:59:19,593 ERROR [AjpMessage]
Invalid message recieved with signature 18245
16:59:25,451 ERROR [AjpMessage] Invalid message recieved with
signature 18245
16:59:28,426 ERROR [AjpMessage] Invalid message recieved with
signature 18245
17:06:34,143 ERROR [AxisRESTServlet] org.apache.axis2.AxisFault:
Service not found operation terminated !!; nested exception is:
org.apache.axis2.AxisFault: Service not found operation
terminated !!
17:06:35,099 ERROR [AxisRESTServlet] org.apache.axis2.AxisFault:
Service not found operation terminated !!; nested exception is:
org.apache.axis2.AxisFault: Service not found operation
terminated !!
17:06:48,483 ERROR [AxisRESTServlet] org.apache.axis2.AxisFault:
Service not found operation terminated !!; nested exception is:
org.apache.axis2.AxisFault: Service not found operation
terminated !!
17:06:58,493 ERROR [AxisRESTServlet] org.apache.axis2.AxisFault:
Service not found operation terminated !!; nested exception is:
org.apache.axis2.AxisFault: Service not found operation
terminated !!
ted exception is: vlet] org.apache.axis2.AxisFault: Service not found
operation terminated !!; nes ERROR [AxisRESTServlet]
org.apache.axis2.AxisFault: Service not found operation terminated
$JBOSS_HOME/bin/run.sh -b 0.0.0.0 &; nested exception is


Everytime I try to launch the i2b2 workbench on my computer, I have
this error.
Has someone already seen this error? Can you tell me what I am doing
wrong?
Thank you.

[Audrey]

For further information, when I go to http://mysite:port/services/listServices,
I see that PM service is active and web access are well configured. Am
I minssing something?
Thanks for your help.

[Phillips, Lori C.]

Sounds like your other services: ONT, CRC, etc are not running...
Do you see them as active in the list services?

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[Audrey Hureau]

Actually, I did not install it yet. But I don't think it is the problem because I installed i2b2 once and I already had this issue whereas I installed the other cells. So, I am trying to install it again but the error is still present. I don't know what to do... Thank you for your quick answer.

2011/3/31 Phillips, Lori C. <LCPHI...@partners.org>

[Phillips, Lori C.]

I believe the network connection error is happening because you have not deployed your other cells.

The workbench tries to connect to ONT, CRC, etc on startup; if it does not find them it gives the

network connection error.

---

From: i2b2-ins...@googlegroups.com [mailto:i2b2-ins...@googlegroups.com] On Behalf Of Audrey Hureau
Sent: Thursday, March 31, 2011 12:51 PM
To: i2b2-ins...@googlegroups.com

[Audrey Hureau]

I don't think so because I had the same error message after all cells during the first i2b2 installation. Furthermore, if I am trying to launch the workbench it is because I am following the installation guide ( 8.1 section : PM Cell Sanity Test via the i2b2Workbench), so I think that won't be a problem because the PM cell is the second step of the i2b2 installation process.

[Peter Beninato]

Did you update the workbench properties file for you new URLs?

[Audrey Hureau]

Yes I did. Here is it:

writeTimelineFile=yes
applicationName=i2b2
messageversion=1.1
demoUser=no
#I2b2.1=HarvardDemo,REST,http://services.i2b2.org/PM/rest/PMService/
I2b2.2=i2b2demo,REST,http://roogle:9090/i2b2/rest/PMService/

Is there something wrong in it?

2011/3/31 Peter Beninato <beni...@ohsu.edu>

[Audrey Hureau]

My mistake, Lori. You were right. I installed other cells and I don't have any connection problem anymore. I am sorry.
However, I stilk have an issue in the workbench. The worplace  cell seems not working. I have en error such as :"could not create the view : an unexpected exception was thrown".
When I clik on "details" I can read:

"java.util.MissingResourceException: Can't find bundle for base name Workplace, locale fr_FR
    at java.util.ResourceBundle.throwMissingResourceException(Unknown Source)
    at java.util.ResourceBundle.getBundleImpl(Unknown Source)
    at java.util.ResourceBundle.getBundle(Unknown Source)
    at edu.harvard.i2b2.eclipse.plugins.workplace.util.Messages.<clinit>(Messages.java:20)
    at edu.harvard.i2b2.eclipse.plugins.workplace.ws.WorkplaceRequestData.getMessageHeader(WorkplaceRequestData.java:64)
    at edu.harvard.i2b2.eclipse.plugins.workplace.ws.GetFoldersByUserIdRequestMessage.doBuildXML(GetFoldersByUserIdRequestMessage.java:91)
    at edu.harvard.i2b2.eclipse.plugins.workplace.ws.WorkplaceServiceDriver.getHomeFoldersByUserId(WorkplaceServiceDriver.java:131)
    at edu.harvard.i2b2.eclipse.plugins.workplace.views.TreeNode.updateFolders(TreeNode.java:326)
    at edu.harvard.i2b2.eclipse.plugins.workplace.views.TreeNode.getHomeFolders(TreeNode.java:304)
    at edu.harvard.i2b2.eclipse.plugins.workplace.views.NodeBrowser.populateRootNode(NodeBrowser.java:560)
    at edu.harvard.i2b2.eclipse.plugins.workplace.views.NodeBrowser.createTreeViewer(NodeBrowser.java:247)
    at edu.harvard.i2b2.eclipse.plugins.workplace.views.NodeBrowser.<init>(NodeBrowser.java:87)
    at edu.harvard.i2b2.eclipse.plugins.workplace.views.TreeComposite.populateControl(TreeComposite.java:35)
    at edu.harvard.i2b2.eclipse.plugins.workplace.views.TreeComposite.<init>(TreeComposite.java:27)
    at edu.harvard.i2b2.eclipse.plugins.workplace.views.WorkplaceView.createPartControl(WorkplaceView.java:80)
    at org.eclipse.ui.internal.ViewReference.createPartHelper(ViewReference.java:367)
    at org.eclipse.ui.internal.ViewReference.createPart(ViewReference.java:226)
    at org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:595)
    at org.eclipse.ui.internal.PartPane.setVisible(PartPane.java:313)
    at org.eclipse.ui.internal.ViewPane.setVisible(ViewPane.java:529)
    at org.eclipse.ui.internal.presentations.PresentablePart.setVisible(PresentablePart.java:180)
    at org.eclipse.ui.internal.presentations.util.PresentablePartFolder.select(PresentablePartFolder.java:270)
    at org.eclipse.ui.internal.presentations.util.LeftToRightTabOrder.select(LeftToRightTabOrder.java:65)
    at org.eclipse.ui.internal.presentations.util.TabbedStackPresentation.selectPart(TabbedStackPresentation.java:473)
    at org.eclipse.ui.internal.PartStack.refreshPresentationSelection(PartStack.java:1256)
    at org.eclipse.ui.internal.PartStack.createControl(PartStack.java:668)
    at org.eclipse.ui.internal.PartStack.createControl(PartStack.java:576)
    at org.eclipse.ui.internal.PartSashContainer.createControl(PartSashContainer.java:568)
    at org.eclipse.ui.internal.PerspectiveHelper.activate(PerspectiveHelper.java:272)
    at org.eclipse.ui.internal.Perspective.onActivate(Perspective.java:982)
    at org.eclipse.ui.internal.WorkbenchPage.onActivate(WorkbenchPage.java:2626)
    at org.eclipse.ui.internal.WorkbenchWindow$27.run(WorkbenchWindow.java:2965)
    at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:70)
    at org.eclipse.ui.internal.WorkbenchWindow.setActivePage(WorkbenchWindow.java:2946)
    at org.eclipse.ui.internal.WorkbenchWindow$21.runWithException(WorkbenchWindow.java:2263)
    at org.eclipse.ui.internal.StartupThreading$StartupRunnable.run(StartupThreading.java:31)
    at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
    at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:134)
    at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:3885)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3506)
    at org.eclipse.ui.application.WorkbenchAdvisor.openWindows(WorkbenchAdvisor.java:803)
    at org.eclipse.ui.internal.Workbench$28.runWithException(Workbench.java:1384)
    at org.eclipse.ui.internal.StartupThreading$StartupRunnable.run(StartupThreading.java:31)
    at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
    at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:134)
    at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:3885)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3506)
    at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:2316)
    at org.eclipse.ui.internal.Workbench.access$4(Workbench.java:2221)
    at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:500)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
    at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:493)
    at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149)
    at edu.harvard.i2b2.eclipse.Application.run(Application.java:135)"
 
What can I do to fix it?
Thank you all.

2011/4/1 Audrey Hureau <audrey...@gmail.com>

[Mendis, Michael E.]

Try adding these two lines to your i2b2workbench.ini file:
-Duser.language=fr
-Duser.region=FR

-mike

2011/4/1 Audrey Hureau <audrey...@gmail.com>

>> *From:* i2b2-ins...@googlegroups.com [mailto:
>> i2b2-ins...@googlegroups.com] *On Behalf Of *Audrey Hureau
>> *Sent:* Thursday, March 31, 2011 10:12 AM
>>
>> *To:* i2b2-ins...@googlegroups.com
>> *Subject:* Re: Network Error when opening Workbench

>>
>>
>>
>> I don't think so because I had the same error message after all cells
>> during the first i2b2 installation. Furthermore, if I am trying to launch
>> the workbench it is because I am following the installation guide ( 8.1
>> section : PM Cell Sanity Test via the i2b2Workbench), so I think that won't
>> be a problem because the PM cell is the second step of the i2b2 installation
>> process.
>>
>> 2011/3/31 Phillips, Lori C. <LCPHI...@partners.org>
>>
>> I believe the network connection error is happening because you have not
>> deployed your other cells.
>>
>> The workbench tries to connect to ONT, CRC, etc on startup; if it does not
>> find them it gives the
>>
>> network connection error.
>>
>>

>> ------------------------------
>>
>> *From:* i2b2-ins...@googlegroups.com [mailto:
>> i2b2-ins...@googlegroups.com] *On Behalf Of *Audrey Hureau
>> *Sent:* Thursday, March 31, 2011 12:51 PM
>> *To:* i2b2-ins...@googlegroups.com
>>
>>
>> *Subject:* Re: Network Error when opening Workbench

[Audrey Hureau]

Thank you Mike for your answer. However, it still doesn't work after adding those both lines in the i2b2workbenche.ini file.
I still have the same error for the workplace cell.

2011/4/1 Mendis, Michael E. <MME...@partners.org>