1.6 -> 1.7 Upgrade listServices produces 404 error

Rebe

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Jan 14, 2014, 12:44:34 PM1/14/14

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CentOS 6 64

Oracle 11g

1) Upgrade Data

a) ant -f data_build.xml upgrade_table_release_1-7

b) ant -f data_build.xml upgrade_procedures_release_1-7

c) ant -f data_build.xml upgrade_hive_tables_release_1-7 (Document correction: had to change “hivedata” to “hive”)

2) IM Data Install

a) ant -f data_build.xml create_imdata_tables_release_1-7

b) ant -f data_build.xml db_imdata_load_data

3) PM

a) install axis under i2b2.war

b) create i2b2.war.dodeploy

c) server-common

1) ant clean dist deploy jboss_pre_deployment_setup

d) ant -f master_build.xml clean build-all deploy

e) contents of deployments directory after jboss startup:

[root@i2b2 deployments]# ls

i2b2.war ojdbc6.jar.deployed postgresql-9.2-1002.jdbc4.jar sqljdbc4.jar

i2b2.war.deployed pm-ds.xml postgresql-9.2-1002.jdbc4.jar.skipdeploy sqljdbc4.jar.skipdeploy

ojdbc6.jar pm-ds.xml.deployed README.txt

f) console log

[root@i2b2 deployments]# /usr/local/jboss/bin/standalone.sh -b 0.0.0.0

=========================================================================

JBoss Bootstrap Environment

JBOSS_HOME: /usr/local/jboss

JAVA: /usr/local/java/bin/java

JAVA_OPTS: -server -XX:+UseCompressedOops -XX:+TieredCompilation -Xms64m -Xmx512m -XX:MaxPermSize=256m -Djava.net.preferIPv4Stack=true -Dorg.jboss.resolver.warning=true -Dsun.rmi.dgc.client.gcInterval=3600000 -Dsun.rmi.dgc.server.gcInterval=3600000 -Djboss.modules.system.pkgs=org.jboss.byteman -Djava.awt.headless=true -Djboss.server.default.config=standalone.xml

=========================================================================

12:12:50,982 INFO [org.jboss.modules] JBoss Modules version 1.1.1.GA

12:12:51,410 INFO [org.jboss.msc] JBoss MSC version 1.0.2.GA

12:12:51,490 INFO [org.jboss.as] JBAS015899: JBoss AS 7.1.1.Final "Brontes" starting

12:12:53,210 INFO [org.xnio] XNIO Version 3.0.3.GA

12:12:53,227 INFO [org.jboss.as.server] JBAS015888: Creating http management service using socket-binding (management-http)

12:12:53,255 INFO [org.xnio.nio] XNIO NIO Implementation Version 3.0.3.GA

12:12:53,272 INFO [org.jboss.remoting] JBoss Remoting version 3.2.3.GA

12:12:53,327 INFO [org.jboss.as.logging] JBAS011502: Removing bootstrap log handlers

12:12:53,341 INFO [org.jboss.as.configadmin] (ServerService Thread Pool -- 26) JBAS016200: Activating ConfigAdmin Subsystem

12:12:53,371 INFO [org.jboss.as.clustering.infinispan] (ServerService Thread Pool -- 31) JBAS010280: Activating Infinispan subsystem.

12:12:53,457 INFO [org.jboss.as.security] (ServerService Thread Pool -- 44) JBAS013101: Activating Security Subsystem

12:12:53,486 INFO [org.jboss.as.osgi] (ServerService Thread Pool -- 39) JBAS011940: Activating OSGi Subsystem

12:12:53,488 INFO [org.jboss.as.naming] (ServerService Thread Pool -- 38) JBAS011800: Activating Naming Subsystem

12:12:53,506 INFO [org.jboss.as.webservices] (ServerService Thread Pool -- 48) JBAS015537: Activating WebServices Extension

12:12:53,533 INFO [org.jboss.as.connector] (MSC service thread 1-2) JBAS010408: Starting JCA Subsystem (JBoss IronJacamar 1.0.9.Final)

12:12:53,574 INFO [org.jboss.as.security] (MSC service thread 1-1) JBAS013100: Current PicketBox version=4.0.7.Final

12:12:53,646 INFO [org.jboss.as.connector.subsystems.datasources] (ServerService Thread Pool -- 27) JBAS010403: Deploying JDBC-compliant driver class org.h2.Driver (version 1.3)

12:12:53,820 INFO [org.jboss.as.naming] (MSC service thread 1-1) JBAS011802: Starting Naming Service

12:12:54,124 INFO [org.jboss.as.mail.extension] (MSC service thread 1-2) JBAS015400: Bound mail session [java:jboss/mail/Default]

12:12:54,347 INFO [org.jboss.ws.common.management.AbstractServerConfig] (MSC service thread 1-1) JBoss Web Services - Stack CXF Server 4.0.2.GA

12:12:54,474 INFO [org.apache.coyote.http11.Http11Protocol] (MSC service thread 1-2) Starting Coyote HTTP/1.1 on http--0.0.0.0-8080

12:12:55,384 INFO [org.jboss.as.remoting] (MSC service thread 1-2) JBAS017100: Listening on /127.0.0.1:9999

12:12:55,417 INFO [org.jboss.as.server.deployment.scanner] (MSC service thread 1-2) JBAS015012: Started FileSystemDeploymentService for directory /usr/local/jboss/standalone/deployments

12:12:55,479 INFO [org.jboss.as.remoting] (MSC service thread 1-1) JBAS017100: Listening on /0.0.0.0:4447

12:12:55,520 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-1) JBAS010400: Bound data source [java:jboss/datasources/ExampleDS]

12:12:55,564 INFO [org.jboss.as.server.deployment] (MSC service thread 1-1) JBAS015876: Starting deployment of "ojdbc6.jar"

12:12:55,579 INFO [org.jboss.as.server.deployment] (MSC service thread 1-2) JBAS015876: Starting deployment of "i2b2.war"

12:12:56,131 INFO [org.jboss.as.server.deployment] (MSC service thread 1-2) JBAS015876: Starting deployment of "pm-ds.xml"

12:12:56,482 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-2) JBAS010403: Deploying JDBC-compliant driver class oracle.jdbc.OracleDriver (version 11.2)

12:12:56,515 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-1) JBAS010400: Bound data source [PMBootStrapDS]

12:12:57,105 INFO [org.jboss.web] (MSC service thread 1-2) JBAS018210: Registering web context: /i2b2

12:12:57,121 INFO [org.jboss.as] (MSC service thread 1-1) JBAS015951: Admin console listening on http://127.0.0.1:9990

12:12:57,126 INFO [org.jboss.as] (MSC service thread 1-1) JBAS015874: JBoss AS 7.1.1.Final "Brontes" started in 6715ms - Started 234 of 315 services (80 services are passive or on-demand)

12:12:57,212 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS018559: Deployed "pm-ds.xml"

12:12:57,212 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS018559: Deployed "i2b2.war"

12:12:57,213 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS018559: Deployed "ojdbc6.jar"

d) Web Output:

HTTP Status 404 - /i2b2/services/listServices

type Status report

message /i2b2/services/listServices

description The requested resource (/i2b2/services/listServices) is not available.

JBoss Web/7.0.13.Final

Fabrice Laborde

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Jan 23, 2014, 5:29:48 AM1/23/14

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Hi,

Here on CentOS 6.6 64b, Postgresql 9.3, JBoss 7.1.1-Final, we have similar issue.

John Reber

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Jan 23, 2014, 5:37:24 AM1/23/14

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I'm still having same issue on CentOS. I spent the past two days creating a new CentOS VM with a new oracle database and trying a new install, eliminating any upgrade issues. I still get a 404 error when trying to listServices. JBoss web console shows i2b2.war as being deployed.

John Reber

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Mendis, Michael E.

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Jan 23, 2014, 12:13:28 PM1/23/14

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What does the i2b2.war folder look like?

i did notice that apache has changed the way they package the war zip.

if it should looks like:

ls i2b2.war

META-INF WEB-INF axis2-web org

If it has a axis2.war file in it, than do the following:

1) shut down jboss

2) move the axis2.war to the deployment directory

3) delete the i2b2.war folder (rm -rf i2b2.war)

4) create a i2b2.war folder (mkdir i2b2.war)

5 go into the i2b2.war folder ( cd i2b2.war)

6) unzip the axis2.war file (unzip ../axis2.war .)

-mike

On Jan 23, 2014, at 5:37 AM, John Reber <jpr...@gmail.com>

wrote:

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John Reber

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Jan 23, 2014, 1:47:12 PM1/23/14

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Mike,

The following seems to fix my issue. I can now "listServices" and am seeing the PM service. I will continue with the fresh deployment and if all goes well will move onto upgrading/

As an FYI, my first attempt at the following failed with an internal server error. I then marked the moved axis2.war to skipdeploy.

John Reber

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From: "Mendis, Michael E." <MME...@PARTNERS.ORG>
Reply-To: <i2b2-ins...@googlegroups.com>
Date: Thursday, January 23, 2014 at 12:13 PM
To: "<i2b2-ins...@googlegroups.com>" <i2b2-ins...@googlegroups.com>
Subject: Re: 1.6 -> 1.7 Upgrade listServices produces 404 error

What does the i2b2.war folder look like?

i did notice that apache has changed the way they package the war zip.

if it should looks like:

ls i2b2.war

META-INF WEB-INFaxis2-web org

The information contained in this transmission contains privileged and confidential information. It is intended only for the use of the person named above. If you are not the intended recipient, you are hereby notified that any review, dissemination, distribution or duplication of this communication is strictly prohibited. If you are not the intended recipient, please contact the sender by reply email and destroy all copies of the original message.

CAUTION: Intended recipients should NOT use email communication for emergent or urgent health care matters.

kpr...@uic.edu

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Jul 13, 2015, 1:25:53 PM7/13/15

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Hi All,

I seem to face the same issue that listServices is displaying: Http status 404.

This is so far I have checked:

I have the same directory structure as pointed by Mike:

In the directory: /opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war

i have following files and directories:

drwxr-xr-x 3 root root 4096 Apr 17 2012 org

-rw-rw-rw- 1 root root 0 Jul 8 11:45 i2b2.war.dodeploy

drwxr-xr-x 2 root root 4096 Jul 10 16:23 META-INF

drwxr-xr-x 6 root root 4096 Jul 10 16:23 axis2-web

drwxr-xr-x 7 root root 4096 Jul 10 16:23 WEB-INF

i also checked the pm-ds.xml file for proper configuration:

<?xml version="1.0" encoding="UTF-8"?>

<datasource jta="false" jndi-name="java:/PMBootStrapDS"

pool-name="PMBootStrapDS" enabled="true" use-ccm="false">

<connection-url>jdbc:oracle:thin:@localhost:1521:xe</connection-url>

<driver-class>oracle.jdbc.OracleDriver</driver-class>

<driver>ojdbc6.jar</driver>

<user-name>i2b2pm</user-name>

<password>demouser</password>

</security>

<validate-on-match>false</validate-on-match>

<background-validation>false</background-validation>

</validation>

<share-prepared-statements>false</share-prepared-statements>

</statement>

</datasource>

I also checked if php, curl and php-curl were installed and enabled on my Vm:

PHP:

php -v

PHP 5.3.3 (cli) (built: Jul 3 2015 03:10:33)

cURL:

curl -V

curl 7.19.7 (x86_64-redhat-linux-gnu) libcurl/7.19.7 NSS/3.16.2.3 Basic ECC zlib/1.2.3 libidn/1.18 libssh2/1.4.2

Protocols: tftp ftp telnet dict ldap ldaps http file https ftps scp sftp

Features: GSS-Negotiate IDN IPv6 Largefile NTLM SSL libz

php-curl:

Configure Command => './configure' '--build=x86_64-redhat-linux-gnu' '--host=x86_64-redhat-linux-gnu' '--target=x86_64-redhat-linux-gnu' '--program-prefix=' '--prefix=/usr' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' '--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' '--libdir=/usr/lib64' '--libexecdir=/usr/libexec' '--localstatedir=/var' '--sharedstatedir=/var/lib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--cache-file=../config.cache' '--with-libdir=lib64' '--with-config-file-path=/etc' '--with-config-file-scan-dir=/etc/php.d' '--disable-debug' '--with-pic' '--disable-rpath' '--without-pear' '--with-bz2' '--with-exec-dir=/usr/bin' '--with-freetype-dir=/usr' '--with-png-dir=/usr' '--with-xpm-dir=/usr' '--enable-gd-native-ttf' '--without-gdbm' '--with-gettext' '--with-gmp' '--with-iconv' '--with-jpeg-dir=/usr' '--with-openssl' '--with-pcre-regex=/usr' '--with-zlib' '--with-layout=GNU' '--enable-exif' '--enable-ftp' '--enable-magic-quotes' '--enable-sockets' '--enable-sysvsem' '--enable-sysvshm' '--enable-sysvmsg' '--with-kerberos' '--enable-ucd-snmp-hack' '--enable-shmop' '--enable-calendar' '--without-sqlite' '--with-libxml-dir=/usr' '--enable-xml' '--with-system-tzdata' '--enable-force-cgi-redirect' '--enable-pcntl' '--with-imap=shared' '--with-imap-ssl' '--enable-mbstring=shared' '--enable-mbregex' '--with-gd=shared' '--enable-bcmath=shared' '--enable-dba=shared' '--with-db4=/usr' '--with-xmlrpc=shared' '--with-ldap=shared' '--with-ldap-sasl' '--with-mysql=shared,/usr' '--with-mysqli=shared,/usr/lib64/mysql/mysql_config' '--enable-dom=shared' '--with-pgsql=shared' '--enable-wddx=shared' '--with-snmp=shared,/usr' '--enable-soap=shared' '--with-xsl=shared,/usr' '--enable-xmlreader=shared' '--enable-xmlwriter=shared' '--with-curl=shared,/usr' '--enable-fastcgi' '--enable-pdo=shared' '--with-pdo-odbc=shared,unixODBC,/usr' '--with-pdo-mysql=shared,/usr/lib64/mysql/mysql_config' '--with-pdo-pgsql=shared,/usr' '--with-pdo-sqlite=shared,/usr' '--with-sqlite3=shared,/usr' '--enable-json=shared' '--enable-zip=shared' '--without-readline' '--with-libedit' '--with-pspell=shared' '--enable-phar=shared' '--with-tidy=shared,/usr' '--enable-sysvmsg=shared' '--enable-sysvshm=shared' '--enable-sysvsem=shared' '--enable-posix=shared' '--with-unixODBC=shared,/usr' '--enable-fileinfo=shared' '--enable-intl=shared' '--with-icu-dir=/usr' '--with-enchant=shared,/usr' '--with-recode=shared,/usr'

Additional .ini files parsed => /etc/php.d/curl.ini,

extension_dir => /usr/lib64/php/modules => /usr/lib64/php/modules

ls -ltr /usr/lib64/php/modules

total 2244

-rwxr-xr-x 1 root root 83088 Jul 3 02:13 zip.so

-rwxr-xr-x 1 root root 261392 Jul 3 02:13 phar.so

-rwxr-xr-x 1 root root 36200 Jul 3 02:13 json.so

-rwxr-xr-x 1 root root 1843120 Jul 3 02:13 fileinfo.so

-rwxr-xr-x 1 root root 66096 Jul 3 02:13 curl.so

curl

cURL support => enabled

cURL Information => 7.19.7

Kindly advise what should i check next so that i can resolve this problem.

Regards

Kartikey

kpr...@uic.edu

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Jul 14, 2015, 2:01:16 PM7/14/15

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Hi All,

Now I can open the page: listServices. The problem that I faced is, the documentation mentions to start jboss as a service from init.d directory. But if you see the jboss-as.config file residing in the /etc/jboss-as, you will see that there is a console.log at /var/log/jboss-as/console.log which will show all the error messages like these:

"12:43:57,637 ERROR [org.jboss.as.controller.management-operation] (DeploymentScanner-threads - 1) JBAS014608: Failed to store configuration to standalone.xml: java.io.FileNotFoundException: /usr/share/jboss-as/standalone/configuration/standalone.xml (No such file or directory)"

for almost everything. I tried to make the same directory structure at /usr/share directory but that also didn't help. So i tried starting the service from /opt/jboss-as-7.1.1.Final/bin. ./standalone.sh & to make jboss run in background and verified if jboss was running: /etc/init.d/jboss-as-standalone.sh status and jboss is running will be the status. after doing so, I was able to login to http://localhost:9090/i2b2/services/listServices