error in deployment of Ontology cell
208 views
Skip to first unread message
Alaa Alarfaj
Jan 4, 2016, 2:41:18 PM1/4/16
to i2b2 Install Help
Hello everyone,
I am trying to install the Ontology cell. At the first installation of it, it was deployed successfully. But, when I shut down the computer and start it later, it not working. The deployment folder show ont-ds.xml.failed. This file display this error: {"JBAS014653: Composite operation failed and was rolled back. Steps that failed:" => {"Operation step-2" => {"JBAS014671: Failed services" => {"jboss.deployment.unit.\"ont-ds.xml\".PARSE" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"ont-ds.xml\".PARSE: Failed to process phase PARSE of deployment \"ont-ds.xml\""}}}}
In the log file:
---------------------------
22:38:46,436 INFO [org.jboss.as.clustering.infinispan] (ServerService Thread Pool -- 31) JBAS010280: Activating Infinispan subsystem.
22:38:46,436 INFO [org.jboss.as.webservices] (ServerService Thread Pool -- 48) JBAS015537: Activating WebServices Extension
22:38:46,530 INFO [org.jboss.as.security] (ServerService Thread Pool -- 44) JBAS013101: Activating Security Subsystem
22:38:46,530 INFO [org.jboss.as.naming] (ServerService Thread Pool -- 38) JBAS011800: Activating Naming Subsystem
22:38:46,592 INFO [org.jboss.as.security] (MSC service thread 1-5) JBAS013100: Current PicketBox version=4.0.7.Final
22:38:46,592 INFO [org.jboss.as.osgi] (ServerService Thread Pool -- 39) JBAS011940: Activating OSGi Subsystem
22:38:46,623 INFO [org.jboss.as.connector.subsystems.datasources] (ServerService Thread Pool -- 27) JBAS010403: Deploying JDBC-compliant driver class org.h2.Driver (version 1.3)
22:38:46,670 INFO [org.jboss.as.naming] (MSC service thread 1-6) JBAS011802: Starting Naming Service
22:38:46,701 INFO [org.jboss.as.mail.extension] (MSC service thread 1-6) JBAS015400: Bound mail session [java:jboss/mail/Default]
22:38:46,717 INFO [org.jboss.as.connector] (MSC service thread 1-5) JBAS010408: Starting JCA Subsystem (JBoss IronJacamar 1.0.9.Final)
22:38:46,904 INFO [org.jboss.ws.common.management.AbstractServerConfig] (MSC service thread 1-4) JBoss Web Services - Stack CXF Server 4.0.2.GA
22:38:47,076 ERROR [org.apache.coyote.http11.Http11Protocol] (MSC service thread 1-2) Error initializing endpoint: java.net.BindException: Address already in use: JVM_Bind /127.0.0.1:9090
at org.apache.tomcat.util.net.JIoEndpoint.init(JIoEndpoint.java:983) [jbossweb-7.0.13.Final.jar:]
at org.apache.coyote.http11.Http11Protocol.init(Http11Protocol.java:190) [jbossweb-7.0.13.Final.jar:]
at org.apache.catalina.connector.Connector.init(Connector.java:983) [jbossweb-7.0.13.Final.jar:]
at org.jboss.as.web.WebConnectorService.start(WebConnectorService.java:267) [jboss-as-web-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
22:38:47,154 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-2) MSC00001: Failed to start service jboss.web.connector.http: org.jboss.msc.service.StartException in service jboss.web.connector.http: JBAS018007: Error starting web connector
at org.jboss.as.web.WebConnectorService.start(WebConnectorService.java:271)
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
Caused by: LifecycleException: Protocol handler initialization failed: java.net.BindException: Address already in use: JVM_Bind /127.0.0.1:9090
at org.apache.catalina.connector.Connector.init(Connector.java:985)
at org.jboss.as.web.WebConnectorService.start(WebConnectorService.java:267)
... 5 more
22:38:47,419 INFO [org.jboss.as.server.deployment.scanner] (MSC service thread 1-3) JBAS015012: Started FileSystemDeploymentService for directory C:\JBOSS\jboss-as-7.1.1.Final\standalone\deployments
22:38:47,419 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment i2b2.war
22:38:47,434 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-6) MSC00001: Failed to start service jboss.remoting.server.remoting-connector: org.jboss.msc.service.StartException in service jboss.remoting.server.remoting-connector: JBAS017112: Address already in use: bind /127.0.0.1:4447
at org.jboss.as.remoting.AbstractStreamServerService.start(AbstractStreamServerService.java:109) [jboss-as-remoting-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
Caused by: java.net.BindException: Address already in use: bind
at sun.nio.ch.Net.bind(Native Method) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:124) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:59) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:52) [rt.jar:1.6.0_45]
at org.xnio.nio.NioXnioWorker.createTcpServer(NioXnioWorker.java:287)
at org.xnio.XnioWorker.createStreamServer(XnioWorker.java:135) [xnio-api-3.0.3.GA.jar:3.0.3.GA]
at org.jboss.remoting3.remote.RemoteConnectionProvider$ProviderInterface.createServer(RemoteConnectionProvider.java:209) [jboss-remoting-3.2.3.GA.jar:3.2.3.GA]
at org.jboss.as.remoting.AbstractStreamServerService.start(AbstractStreamServerService.java:101) [jboss-as-remoting-7.1.1.Final.jar:7.1.1.Final]
... 5 more
22:38:47,512 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment ojdbc6.jar
22:38:47,512 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment ont-ds.xml
22:38:47,512 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-6) MSC00001: Failed to start service jboss.remoting.server.management: org.jboss.msc.service.StartException in service jboss.remoting.server.management: JBAS017112: Address already in use: bind /127.0.0.1:9999
at org.jboss.as.remoting.AbstractStreamServerService.start(AbstractStreamServerService.java:109) [jboss-as-remoting-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
Caused by: java.net.BindException: Address already in use: bind
at sun.nio.ch.Net.bind(Native Method) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:124) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:59) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:52) [rt.jar:1.6.0_45]
at org.xnio.nio.NioXnioWorker.createTcpServer(NioXnioWorker.java:287)
at org.xnio.XnioWorker.createStreamServer(XnioWorker.java:135) [xnio-api-3.0.3.GA.jar:3.0.3.GA]
at org.jboss.remoting3.remote.RemoteConnectionProvider$ProviderInterface.createServer(RemoteConnectionProvider.java:209) [jboss-remoting-3.2.3.GA.jar:3.2.3.GA]
at org.jboss.as.remoting.AbstractStreamServerService.start(AbstractStreamServerService.java:101) [jboss-as-remoting-7.1.1.Final.jar:7.1.1.Final]
... 5 more
22:38:47,528 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment pm-ds.xml
22:38:47,606 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-8) JBAS010400: Bound data source [java:jboss/datasources/ExampleDS]
22:38:47,559 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment postgresql-9.2-1002.jdbc4.jar
22:38:47,559 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-5) MSC00001: Failed to start service jboss.serverManagement.controller.management.http: org.jboss.msc.service.StartException in service jboss.serverManagement.controller.management.http: Address already in use: bind /127.0.0.1:9990
at org.jboss.as.server.mgmt.HttpManagementService.start(HttpManagementService.java:210) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
Caused by: java.net.BindException: Address already in use: bind
at sun.nio.ch.Net.bind(Native Method) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:124) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:59) [rt.jar:1.6.0_45]
at org.jboss.sun.net.httpserver.ServerImpl.<init>(ServerImpl.java:144)
at org.jboss.sun.net.httpserver.HttpServerImpl.<init>(HttpServerImpl.java:54)
at org.jboss.sun.net.httpserver.DefaultHttpServerProvider.createHttpServer(DefaultHttpServerProvider.java:38)
at org.jboss.com.sun.net.httpserver.HttpServer.create(HttpServer.java:147)
at org.jboss.as.domain.http.server.ManagementHttpServer.create(ManagementHttpServer.java:145) [jboss-as-domain-http-interface-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.as.server.mgmt.HttpManagementService.start(HttpManagementService.java:177) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
... 5 more
22:38:47,622 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment sqljdbc4.jar
22:38:47,653 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015003: Found i2b2.war in deployment directory. To trigger deployment create a file called i2b2.war.dodeploy
22:38:48,121 INFO [org.jboss.as.controller] (Controller Boot Thread) JBAS014774: Service status report
JBAS014777: Services which failed to start: service jboss.serverManagement.controller.management.http: org.jboss.msc.service.StartException in service jboss.serverManagement.controller.management.http: Address already in use: bind /127.0.0.1:9990
service jboss.remoting.server.remoting-connector: org.jboss.msc.service.StartException in service jboss.remoting.server.remoting-connector: JBAS017112: Address already in use: bind /127.0.0.1:4447
service jboss.remoting.server.management: org.jboss.msc.service.StartException in service jboss.remoting.server.management: JBAS017112: Address already in use: bind /127.0.0.1:9999
service jboss.web.connector.http: org.jboss.msc.service.StartException in service jboss.web.connector.http: JBAS018007: Error starting web connector
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-4) JBAS015876: Starting deployment of "i2b2.war"
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-5) JBAS015876: Starting deployment of "ont-ds.xml"
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-2) JBAS015876: Starting deployment of "pm-ds.xml"
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-1) JBAS015876: Starting deployment of "sqljdbc4.jar"
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-3) JBAS015876: Starting deployment of "ojdbc6.jar"
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-7) JBAS015876: Starting deployment of "postgresql-9.2-1002.jdbc4.jar"
22:38:48,261 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-4) MSC00001: Failed to start service jboss.deployment.unit."ont-ds.xml".PARSE: org.jboss.msc.service.StartException in service jboss.deployment.unit."ont-ds.xml".PARSE: Failed to process phase PARSE of deployment "ont-ds.xml"
at org.jboss.as.server.deployment.DeploymentUnitPhaseService.start(DeploymentUnitPhaseService.java:119) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
Caused by: org.jboss.as.server.deployment.DeploymentUnitProcessingException: String '--' not allowed in comment (missing '>'?)
at [row,col {unknown-source}]: [41,6]
at org.jboss.as.connector.deployers.processors.DsXmlDeploymentParsingProcessor.deploy(DsXmlDeploymentParsingProcessor.java:85)
at org.jboss.as.server.deployment.DeploymentUnitPhaseService.start(DeploymentUnitPhaseService.java:113) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
... 5 more
Caused by: com.ctc.wstx.exc.WstxParsingException: String '--' not allowed in comment (missing '>'?)
at [row,col {unknown-source}]: [41,6]
at com.ctc.wstx.sr.StreamScanner.constructWfcException(StreamScanner.java:606)
at com.ctc.wstx.sr.StreamScanner.throwParseError(StreamScanner.java:479)
at com.ctc.wstx.sr.StreamScanner.throwParseError(StreamScanner.java:464)
at com.ctc.wstx.sr.BasicStreamReader.skipCommentOrCData(BasicStreamReader.java:3467)
at com.ctc.wstx.sr.BasicStreamReader.skipToken(BasicStreamReader.java:3326)
at com.ctc.wstx.sr.BasicStreamReader.nextFromTree(BasicStreamReader.java:2592)
at com.ctc.wstx.sr.BasicStreamReader.next(BasicStreamReader.java:1050)
at com.ctc.wstx.sr.BasicStreamReader.nextTag(BasicStreamReader.java:1125)
at org.jboss.jca.common.metadata.ds.DsParser.parseDataSources(DsParser.java:145)
at org.jboss.jca.common.metadata.ds.DsParser.parse(DsParser.java:119)
at org.jboss.jca.common.metadata.ds.DsParser.parse(DsParser.java:82)
at org.jboss.as.connector.deployers.processors.DsXmlDeploymentParsingProcessor.deploy(DsXmlDeploymentParsingProcessor.java:80)
... 6 more
22:38:48,558 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-7) JBAS010404: Deploying non-JDBC-compliant driver class org.postgresql.Driver (version 9.2)
22:38:48,714 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-1) JBAS010403: Deploying JDBC-compliant driver class com.microsoft.sqlserver.jdbc.SQLServerDriver (version 4.0)
22:38:48,729 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-1) JBAS010400: Bound data source [PMBootStrapDS]
22:38:48,776 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010403: Deploying JDBC-compliant driver class oracle.jdbc.OracleDriver (version 11.2)
22:38:50,913 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxb-api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-impl-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,913 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry activation.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-impl-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,913 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jsr173_1.0_api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-impl-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,929 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxb1-impl.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-impl-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,944 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxb-api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-xjc-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,944 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxb-impl.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-xjc-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,944 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jsr173_1.0_api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-xjc-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,960 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry activation.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-xjc-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,960 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxws-rt.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxws-tools-2.1.3.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,960 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxb-xjc.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxws-tools-2.1.3.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,976 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry relaxngDatatype.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxws-tools-2.1.3.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,976 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry bcel.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-bind-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,976 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jibx-run.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-bind-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,991 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry xpp3.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-bind-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,991 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry stax-api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-bind-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,991 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry wstx-asl.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-bind-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,991 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry xpp3.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-run-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,007 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry stax-api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-run-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,007 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry wstx-asl.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-run-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,007 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry activation.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/mail-1.4.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,022 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry xercesImpl.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/xalan-2.7.0.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,022 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry xml-apis.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/xalan-2.7.0.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,022 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry serializer.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/xalan-2.7.0.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,381 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010403: Deploying JDBC-compliant driver class oracle.jdbc.OracleDriver (version 11.2)
22:38:51,381 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010404: Deploying non-JDBC-compliant driver class org.postgresql.Driver (version 9.2)
22:38:51,397 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010403: Deploying JDBC-compliant driver class com.microsoft.sqlserver.jdbc.SQLServerDriver (version 4.0)
22:38:51,553 INFO [org.jboss.wsf.stack.cxf.metadata.MetadataBuilder] (MSC service thread 1-3) Add Service
id=edu.harvard.i2b2.crc.loader.ws.RestfulService
address=http://localhost:9090/i2b2/RestfulService
implementor=edu.harvard.i2b2.crc.loader.ws.RestfulService
invoker=org.jboss.wsf.stack.cxf.JBossWSInvoker
serviceName={http://ws.loader.crc.i2b2.harvard.edu/}RestfulServiceService
portName={http://ws.loader.crc.i2b2.harvard.edu/}RestfulServicePort
wsdlLocation=null
mtomEnabled=false
22:38:51,818 INFO [org.apache.cxf.service.factory.ReflectionServiceFactoryBean] (MSC service thread 1-3) Creating Service {http://ws.loader.crc.i2b2.harvard.edu/}RestfulServiceService from class edu.harvard.i2b2.crc.loader.ws.RestfulService
22:38:52,146 INFO [org.apache.cxf.endpoint.ServerImpl] (MSC service thread 1-3) Setting the server's publish address to be http://localhost:9090/i2b2/RestfulService
22:38:52,348 INFO [org.jboss.wsf.stack.cxf.deployment.WSDLFilePublisher] (MSC service thread 1-3) WSDL published to: file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/data/wsdl/i2b2.war/RestfulServiceService.wsdl
22:38:52,348 INFO [org.jboss.as.webservices] (MSC service thread 1-4) JBAS015539: Starting service jboss.ws.port-component-link
22:38:52,380 INFO [org.jboss.as.webservices] (MSC service thread 1-3) JBAS015539: Starting service jboss.ws.endpoint."i2b2.war"."edu.harvard.i2b2.crc.loader.ws.RestfulService"
22:38:52,395 INFO [org.jboss.ws.common.management.DefaultEndpointRegistry] (MSC service thread 1-3) register: jboss.ws:context=i2b2,endpoint=edu.harvard.i2b2.crc.loader.ws.RestfulService
22:38:52,567 WARN [org.apache.axiom.util.stax.dialect.StAXDialectDetector] (MSC service thread 1-3) Unable to determine dialect of the StAX implementation at jar:file:/C:/JBOSS/jboss-as-7.1.1.Final/jboss-modules.jar!/
22:38:52,692 INFO [org.apache.axis2.deployment.ClusterBuilder] (MSC service thread 1-3) Clustering has been disabled
22:38:52,863 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: addressing-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/addressing-1.6.1.mar
22:38:52,894 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: jaxws-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/axis2-jaxws-mar-1.6.1.mar
22:38:52,910 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: metadataExchange-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/mex-1.6.1.mar
22:38:52,926 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: mtompolicy-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/mtompolicy-1.6.1.mar
22:38:52,941 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: ping-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/ping-1.6.1.mar
22:38:52,941 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: script-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/scripting-1.6.1.mar
22:38:52,957 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: soapmonitor-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/soapmonitor-1.6.1.mar
22:38:53,316 INFO [org.apache.axis2.deployment.DeploymentEngine] (MSC service thread 1-3) Deploying Web service: CRC.aar - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/services/CRC.aar
22:38:53,409 INFO [org.apache.axis2.deployment.DeploymentEngine] (MSC service thread 1-3) Deploying Web service: Ontology.aar - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/services/Ontology.aar
22:38:53,456 INFO [org.apache.axis2.deployment.DeploymentEngine] (MSC service thread 1-3) Deploying Web service: ProjectManagement.aar - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/services/ProjectManagement.aar
22:38:53,456 INFO [org.apache.axis2.deployment.DeploymentEngine] (MSC service thread 1-3) Deploying Web service: version-1.6.1.aar - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/services/version-1.6.1.aar
22:38:53,472 WARN [org.apache.axis2.transport.http.AxisServlet] (MSC service thread 1-3) No transportReceiver for org.apache.axis2.transport.http.AxisServletListener found. An instance for HTTP will be configured automatically. Please update your axis2.xml file!
22:38:53,487 INFO [org.jboss.web] (MSC service thread 1-3) JBAS018210: Registering web context: /i2b2
22:38:53,503 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015871: Deploy of deployment "sqljdbc4.jar" was rolled back with no failure message
22:38:53,503 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015871: Deploy of deployment "postgresql-9.2-1002.jdbc4.jar" was rolled back with no failure message
22:38:53,518 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015871: Deploy of deployment "pm-ds.xml" was rolled back with no failure message
22:38:53,534 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015870: Deploy of deployment "ont-ds.xml" was rolled back with failure message {"JBAS014671: Failed services" => {"jboss.deployment.unit.\"ont-ds.xml\".PARSE" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"ont-ds.xml\".PARSE: Failed to process phase PARSE of deployment \"ont-ds.xml\""}}
22:38:53,518 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-5) JBAS010409: Unbound data source [PMBootStrapDS]
22:38:53,534 INFO [org.jboss.as.server.deployment] (MSC service thread 1-8) JBAS015877: Stopped deployment sqljdbc4.jar in 30ms
22:38:53,518 INFO [org.jboss.as.server.deployment] (MSC service thread 1-4) JBAS015877: Stopped deployment postgresql-9.2-1002.jdbc4.jar in 9ms
22:38:53,534 INFO [org.jboss.as.server.deployment] (MSC service thread 1-7) JBAS015877: Stopped deployment ont-ds.xml in 1ms
22:38:53,550 INFO [org.jboss.as.server.deployment] (MSC service thread 1-3) JBAS015877: Stopped deployment ojdbc6.jar in 8ms
22:38:53,534 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015871: Deploy of deployment "ojdbc6.jar" was rolled back with no failure message
22:38:53,550 INFO [org.jboss.as.server.deployment] (MSC service thread 1-5) JBAS015877: Stopped deployment pm-ds.xml in 22ms
22:38:53,550 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015871: Deploy of deployment "i2b2.war" was rolled back with no failure message
22:38:53,612 INFO [org.jboss.as.webservices] (MSC service thread 1-3) JBAS015540: Stopping service jboss.ws.endpoint."i2b2.war"."edu.harvard.i2b2.crc.loader.ws.RestfulService"
22:38:53,612 INFO [org.jboss.ws.common.management.DefaultEndpointRegistry] (MSC service thread 1-3) remove: jboss.ws:context=i2b2,endpoint=edu.harvard.i2b2.crc.loader.ws.RestfulService
22:38:53,628 INFO [org.jboss.as.webservices] (MSC service thread 1-7) JBAS015540: Stopping service jboss.ws.port-component-link
22:38:53,830 INFO [org.jboss.as.server.deployment] (MSC service thread 1-6) JBAS015877: Stopped deployment i2b2.war in 272ms
22:38:53,830 INFO [org.jboss.as.controller] (DeploymentScanner-threads - 2) JBAS014774: Service status report
JBAS014777: Services which failed to start: service jboss.deployment.unit."ont-ds.xml".PARSE: org.jboss.msc.service.StartException in service jboss.deployment.unit."ont-ds.xml".PARSE: Failed to process phase PARSE of deployment "ont-ds.xml"
22:38:53,830 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS014654: Composite operation was rolled back
22:38:53,846 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS014654: Composite operation was rolled back
22:38:53,846 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) {"JBAS014653: Composite operation failed and was rolled back. Steps that failed:" => {"Operation step-2" => {"JBAS014671: Failed services" => {"jboss.deployment.unit.\"ont-ds.xml\".PARSE" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"ont-ds.xml\".PARSE: Failed to process phase PARSE of deployment \"ont-ds.xml\""}}}}
22:38:53,846 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS014654: Composite operation was rolled back
22:38:53,862 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS014654: Composite operation was rolled back
22:38:53,862 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS014654: Composite operation was rolled back
--------------------
any help please?
I am trying to install the Ontology cell. At the first installation of it, it was deployed successfully. But, when I shut down the computer and start it later, it not working. The deployment folder show ont-ds.xml.failed. This file display this error: {"JBAS014653: Composite operation failed and was rolled back. Steps that failed:" => {"Operation step-2" => {"JBAS014671: Failed services" => {"jboss.deployment.unit.\"ont-ds.xml\".PARSE" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"ont-ds.xml\".PARSE: Failed to process phase PARSE of deployment \"ont-ds.xml\""}}}}
In the log file:
---------------------------
22:38:46,436 INFO [org.jboss.as.clustering.infinispan] (ServerService Thread Pool -- 31) JBAS010280: Activating Infinispan subsystem.
22:38:46,436 INFO [org.jboss.as.webservices] (ServerService Thread Pool -- 48) JBAS015537: Activating WebServices Extension
22:38:46,530 INFO [org.jboss.as.security] (ServerService Thread Pool -- 44) JBAS013101: Activating Security Subsystem
22:38:46,530 INFO [org.jboss.as.naming] (ServerService Thread Pool -- 38) JBAS011800: Activating Naming Subsystem
22:38:46,592 INFO [org.jboss.as.security] (MSC service thread 1-5) JBAS013100: Current PicketBox version=4.0.7.Final
22:38:46,592 INFO [org.jboss.as.osgi] (ServerService Thread Pool -- 39) JBAS011940: Activating OSGi Subsystem
22:38:46,623 INFO [org.jboss.as.connector.subsystems.datasources] (ServerService Thread Pool -- 27) JBAS010403: Deploying JDBC-compliant driver class org.h2.Driver (version 1.3)
22:38:46,670 INFO [org.jboss.as.naming] (MSC service thread 1-6) JBAS011802: Starting Naming Service
22:38:46,701 INFO [org.jboss.as.mail.extension] (MSC service thread 1-6) JBAS015400: Bound mail session [java:jboss/mail/Default]
22:38:46,717 INFO [org.jboss.as.connector] (MSC service thread 1-5) JBAS010408: Starting JCA Subsystem (JBoss IronJacamar 1.0.9.Final)
22:38:46,904 INFO [org.jboss.ws.common.management.AbstractServerConfig] (MSC service thread 1-4) JBoss Web Services - Stack CXF Server 4.0.2.GA
22:38:47,076 ERROR [org.apache.coyote.http11.Http11Protocol] (MSC service thread 1-2) Error initializing endpoint: java.net.BindException: Address already in use: JVM_Bind /127.0.0.1:9090
at org.apache.tomcat.util.net.JIoEndpoint.init(JIoEndpoint.java:983) [jbossweb-7.0.13.Final.jar:]
at org.apache.coyote.http11.Http11Protocol.init(Http11Protocol.java:190) [jbossweb-7.0.13.Final.jar:]
at org.apache.catalina.connector.Connector.init(Connector.java:983) [jbossweb-7.0.13.Final.jar:]
at org.jboss.as.web.WebConnectorService.start(WebConnectorService.java:267) [jboss-as-web-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
22:38:47,154 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-2) MSC00001: Failed to start service jboss.web.connector.http: org.jboss.msc.service.StartException in service jboss.web.connector.http: JBAS018007: Error starting web connector
at org.jboss.as.web.WebConnectorService.start(WebConnectorService.java:271)
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
Caused by: LifecycleException: Protocol handler initialization failed: java.net.BindException: Address already in use: JVM_Bind /127.0.0.1:9090
at org.apache.catalina.connector.Connector.init(Connector.java:985)
at org.jboss.as.web.WebConnectorService.start(WebConnectorService.java:267)
... 5 more
22:38:47,419 INFO [org.jboss.as.server.deployment.scanner] (MSC service thread 1-3) JBAS015012: Started FileSystemDeploymentService for directory C:\JBOSS\jboss-as-7.1.1.Final\standalone\deployments
22:38:47,419 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment i2b2.war
22:38:47,434 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-6) MSC00001: Failed to start service jboss.remoting.server.remoting-connector: org.jboss.msc.service.StartException in service jboss.remoting.server.remoting-connector: JBAS017112: Address already in use: bind /127.0.0.1:4447
at org.jboss.as.remoting.AbstractStreamServerService.start(AbstractStreamServerService.java:109) [jboss-as-remoting-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
Caused by: java.net.BindException: Address already in use: bind
at sun.nio.ch.Net.bind(Native Method) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:124) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:59) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:52) [rt.jar:1.6.0_45]
at org.xnio.nio.NioXnioWorker.createTcpServer(NioXnioWorker.java:287)
at org.xnio.XnioWorker.createStreamServer(XnioWorker.java:135) [xnio-api-3.0.3.GA.jar:3.0.3.GA]
at org.jboss.remoting3.remote.RemoteConnectionProvider$ProviderInterface.createServer(RemoteConnectionProvider.java:209) [jboss-remoting-3.2.3.GA.jar:3.2.3.GA]
at org.jboss.as.remoting.AbstractStreamServerService.start(AbstractStreamServerService.java:101) [jboss-as-remoting-7.1.1.Final.jar:7.1.1.Final]
... 5 more
22:38:47,512 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment ojdbc6.jar
22:38:47,512 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment ont-ds.xml
22:38:47,512 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-6) MSC00001: Failed to start service jboss.remoting.server.management: org.jboss.msc.service.StartException in service jboss.remoting.server.management: JBAS017112: Address already in use: bind /127.0.0.1:9999
at org.jboss.as.remoting.AbstractStreamServerService.start(AbstractStreamServerService.java:109) [jboss-as-remoting-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
Caused by: java.net.BindException: Address already in use: bind
at sun.nio.ch.Net.bind(Native Method) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:124) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:59) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:52) [rt.jar:1.6.0_45]
at org.xnio.nio.NioXnioWorker.createTcpServer(NioXnioWorker.java:287)
at org.xnio.XnioWorker.createStreamServer(XnioWorker.java:135) [xnio-api-3.0.3.GA.jar:3.0.3.GA]
at org.jboss.remoting3.remote.RemoteConnectionProvider$ProviderInterface.createServer(RemoteConnectionProvider.java:209) [jboss-remoting-3.2.3.GA.jar:3.2.3.GA]
at org.jboss.as.remoting.AbstractStreamServerService.start(AbstractStreamServerService.java:101) [jboss-as-remoting-7.1.1.Final.jar:7.1.1.Final]
... 5 more
22:38:47,528 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment pm-ds.xml
22:38:47,606 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-8) JBAS010400: Bound data source [java:jboss/datasources/ExampleDS]
22:38:47,559 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment postgresql-9.2-1002.jdbc4.jar
22:38:47,559 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-5) MSC00001: Failed to start service jboss.serverManagement.controller.management.http: org.jboss.msc.service.StartException in service jboss.serverManagement.controller.management.http: Address already in use: bind /127.0.0.1:9990
at org.jboss.as.server.mgmt.HttpManagementService.start(HttpManagementService.java:210) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
Caused by: java.net.BindException: Address already in use: bind
at sun.nio.ch.Net.bind(Native Method) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:124) [rt.jar:1.6.0_45]
at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:59) [rt.jar:1.6.0_45]
at org.jboss.sun.net.httpserver.ServerImpl.<init>(ServerImpl.java:144)
at org.jboss.sun.net.httpserver.HttpServerImpl.<init>(HttpServerImpl.java:54)
at org.jboss.sun.net.httpserver.DefaultHttpServerProvider.createHttpServer(DefaultHttpServerProvider.java:38)
at org.jboss.com.sun.net.httpserver.HttpServer.create(HttpServer.java:147)
at org.jboss.as.domain.http.server.ManagementHttpServer.create(ManagementHttpServer.java:145) [jboss-as-domain-http-interface-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.as.server.mgmt.HttpManagementService.start(HttpManagementService.java:177) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
... 5 more
22:38:47,622 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015014: Re-attempting failed deployment sqljdbc4.jar
22:38:47,653 INFO [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS015003: Found i2b2.war in deployment directory. To trigger deployment create a file called i2b2.war.dodeploy
22:38:48,121 INFO [org.jboss.as.controller] (Controller Boot Thread) JBAS014774: Service status report
JBAS014777: Services which failed to start: service jboss.serverManagement.controller.management.http: org.jboss.msc.service.StartException in service jboss.serverManagement.controller.management.http: Address already in use: bind /127.0.0.1:9990
service jboss.remoting.server.remoting-connector: org.jboss.msc.service.StartException in service jboss.remoting.server.remoting-connector: JBAS017112: Address already in use: bind /127.0.0.1:4447
service jboss.remoting.server.management: org.jboss.msc.service.StartException in service jboss.remoting.server.management: JBAS017112: Address already in use: bind /127.0.0.1:9999
service jboss.web.connector.http: org.jboss.msc.service.StartException in service jboss.web.connector.http: JBAS018007: Error starting web connector
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-4) JBAS015876: Starting deployment of "i2b2.war"
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-5) JBAS015876: Starting deployment of "ont-ds.xml"
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-2) JBAS015876: Starting deployment of "pm-ds.xml"
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-1) JBAS015876: Starting deployment of "sqljdbc4.jar"
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-3) JBAS015876: Starting deployment of "ojdbc6.jar"
22:38:48,168 INFO [org.jboss.as.server.deployment] (MSC service thread 1-7) JBAS015876: Starting deployment of "postgresql-9.2-1002.jdbc4.jar"
22:38:48,261 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-4) MSC00001: Failed to start service jboss.deployment.unit."ont-ds.xml".PARSE: org.jboss.msc.service.StartException in service jboss.deployment.unit."ont-ds.xml".PARSE: Failed to process phase PARSE of deployment "ont-ds.xml"
at org.jboss.as.server.deployment.DeploymentUnitPhaseService.start(DeploymentUnitPhaseService.java:119) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]
Caused by: org.jboss.as.server.deployment.DeploymentUnitProcessingException: String '--' not allowed in comment (missing '>'?)
at [row,col {unknown-source}]: [41,6]
at org.jboss.as.connector.deployers.processors.DsXmlDeploymentParsingProcessor.deploy(DsXmlDeploymentParsingProcessor.java:85)
at org.jboss.as.server.deployment.DeploymentUnitPhaseService.start(DeploymentUnitPhaseService.java:113) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
... 5 more
Caused by: com.ctc.wstx.exc.WstxParsingException: String '--' not allowed in comment (missing '>'?)
at [row,col {unknown-source}]: [41,6]
at com.ctc.wstx.sr.StreamScanner.constructWfcException(StreamScanner.java:606)
at com.ctc.wstx.sr.StreamScanner.throwParseError(StreamScanner.java:479)
at com.ctc.wstx.sr.StreamScanner.throwParseError(StreamScanner.java:464)
at com.ctc.wstx.sr.BasicStreamReader.skipCommentOrCData(BasicStreamReader.java:3467)
at com.ctc.wstx.sr.BasicStreamReader.skipToken(BasicStreamReader.java:3326)
at com.ctc.wstx.sr.BasicStreamReader.nextFromTree(BasicStreamReader.java:2592)
at com.ctc.wstx.sr.BasicStreamReader.next(BasicStreamReader.java:1050)
at com.ctc.wstx.sr.BasicStreamReader.nextTag(BasicStreamReader.java:1125)
at org.jboss.jca.common.metadata.ds.DsParser.parseDataSources(DsParser.java:145)
at org.jboss.jca.common.metadata.ds.DsParser.parse(DsParser.java:119)
at org.jboss.jca.common.metadata.ds.DsParser.parse(DsParser.java:82)
at org.jboss.as.connector.deployers.processors.DsXmlDeploymentParsingProcessor.deploy(DsXmlDeploymentParsingProcessor.java:80)
... 6 more
22:38:48,558 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-7) JBAS010404: Deploying non-JDBC-compliant driver class org.postgresql.Driver (version 9.2)
22:38:48,714 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-1) JBAS010403: Deploying JDBC-compliant driver class com.microsoft.sqlserver.jdbc.SQLServerDriver (version 4.0)
22:38:48,729 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-1) JBAS010400: Bound data source [PMBootStrapDS]
22:38:48,776 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010403: Deploying JDBC-compliant driver class oracle.jdbc.OracleDriver (version 11.2)
22:38:50,913 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxb-api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-impl-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,913 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry activation.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-impl-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,913 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jsr173_1.0_api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-impl-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,929 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxb1-impl.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-impl-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,944 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxb-api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-xjc-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,944 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxb-impl.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-xjc-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,944 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jsr173_1.0_api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-xjc-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,960 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry activation.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxb-xjc-2.1.7.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,960 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxws-rt.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxws-tools-2.1.3.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,960 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jaxb-xjc.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxws-tools-2.1.3.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,976 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry relaxngDatatype.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jaxws-tools-2.1.3.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,976 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry bcel.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-bind-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,976 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry jibx-run.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-bind-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,991 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry xpp3.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-bind-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,991 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry stax-api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-bind-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,991 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry wstx-asl.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-bind-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:50,991 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry xpp3.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-run-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,007 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry stax-api.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-run-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,007 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry wstx-asl.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/jibx-run-1.2.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,007 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry activation.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/mail-1.4.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,022 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry xercesImpl.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/xalan-2.7.0.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,022 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry xml-apis.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/xalan-2.7.0.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,022 WARN [org.jboss.as.server.deployment] (MSC service thread 1-5) Class Path entry serializer.jar in "/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/lib/xalan-2.7.0.jar" does not point to a valid jar for a Class-Path reference.
22:38:51,381 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010403: Deploying JDBC-compliant driver class oracle.jdbc.OracleDriver (version 11.2)
22:38:51,381 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010404: Deploying non-JDBC-compliant driver class org.postgresql.Driver (version 9.2)
22:38:51,397 INFO [org.jboss.as.connector.deployers.jdbc] (MSC service thread 1-3) JBAS010403: Deploying JDBC-compliant driver class com.microsoft.sqlserver.jdbc.SQLServerDriver (version 4.0)
22:38:51,553 INFO [org.jboss.wsf.stack.cxf.metadata.MetadataBuilder] (MSC service thread 1-3) Add Service
id=edu.harvard.i2b2.crc.loader.ws.RestfulService
address=http://localhost:9090/i2b2/RestfulService
implementor=edu.harvard.i2b2.crc.loader.ws.RestfulService
invoker=org.jboss.wsf.stack.cxf.JBossWSInvoker
serviceName={http://ws.loader.crc.i2b2.harvard.edu/}RestfulServiceService
portName={http://ws.loader.crc.i2b2.harvard.edu/}RestfulServicePort
wsdlLocation=null
mtomEnabled=false
22:38:51,818 INFO [org.apache.cxf.service.factory.ReflectionServiceFactoryBean] (MSC service thread 1-3) Creating Service {http://ws.loader.crc.i2b2.harvard.edu/}RestfulServiceService from class edu.harvard.i2b2.crc.loader.ws.RestfulService
22:38:52,146 INFO [org.apache.cxf.endpoint.ServerImpl] (MSC service thread 1-3) Setting the server's publish address to be http://localhost:9090/i2b2/RestfulService
22:38:52,348 INFO [org.jboss.wsf.stack.cxf.deployment.WSDLFilePublisher] (MSC service thread 1-3) WSDL published to: file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/data/wsdl/i2b2.war/RestfulServiceService.wsdl
22:38:52,348 INFO [org.jboss.as.webservices] (MSC service thread 1-4) JBAS015539: Starting service jboss.ws.port-component-link
22:38:52,380 INFO [org.jboss.as.webservices] (MSC service thread 1-3) JBAS015539: Starting service jboss.ws.endpoint."i2b2.war"."edu.harvard.i2b2.crc.loader.ws.RestfulService"
22:38:52,395 INFO [org.jboss.ws.common.management.DefaultEndpointRegistry] (MSC service thread 1-3) register: jboss.ws:context=i2b2,endpoint=edu.harvard.i2b2.crc.loader.ws.RestfulService
22:38:52,567 WARN [org.apache.axiom.util.stax.dialect.StAXDialectDetector] (MSC service thread 1-3) Unable to determine dialect of the StAX implementation at jar:file:/C:/JBOSS/jboss-as-7.1.1.Final/jboss-modules.jar!/
22:38:52,692 INFO [org.apache.axis2.deployment.ClusterBuilder] (MSC service thread 1-3) Clustering has been disabled
22:38:52,863 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: addressing-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/addressing-1.6.1.mar
22:38:52,894 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: jaxws-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/axis2-jaxws-mar-1.6.1.mar
22:38:52,910 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: metadataExchange-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/mex-1.6.1.mar
22:38:52,926 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: mtompolicy-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/mtompolicy-1.6.1.mar
22:38:52,941 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: ping-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/ping-1.6.1.mar
22:38:52,941 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: script-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/scripting-1.6.1.mar
22:38:52,957 INFO [org.apache.axis2.deployment.ModuleDeployer] (MSC service thread 1-3) Deploying module: soapmonitor-1.6.1 - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/modules/soapmonitor-1.6.1.mar
22:38:53,316 INFO [org.apache.axis2.deployment.DeploymentEngine] (MSC service thread 1-3) Deploying Web service: CRC.aar - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/services/CRC.aar
22:38:53,409 INFO [org.apache.axis2.deployment.DeploymentEngine] (MSC service thread 1-3) Deploying Web service: Ontology.aar - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/services/Ontology.aar
22:38:53,456 INFO [org.apache.axis2.deployment.DeploymentEngine] (MSC service thread 1-3) Deploying Web service: ProjectManagement.aar - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/services/ProjectManagement.aar
22:38:53,456 INFO [org.apache.axis2.deployment.DeploymentEngine] (MSC service thread 1-3) Deploying Web service: version-1.6.1.aar - file:/C:/JBOSS/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/WEB-INF/services/version-1.6.1.aar
22:38:53,472 WARN [org.apache.axis2.transport.http.AxisServlet] (MSC service thread 1-3) No transportReceiver for org.apache.axis2.transport.http.AxisServletListener found. An instance for HTTP will be configured automatically. Please update your axis2.xml file!
22:38:53,487 INFO [org.jboss.web] (MSC service thread 1-3) JBAS018210: Registering web context: /i2b2
22:38:53,503 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015871: Deploy of deployment "sqljdbc4.jar" was rolled back with no failure message
22:38:53,503 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015871: Deploy of deployment "postgresql-9.2-1002.jdbc4.jar" was rolled back with no failure message
22:38:53,518 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015871: Deploy of deployment "pm-ds.xml" was rolled back with no failure message
22:38:53,534 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015870: Deploy of deployment "ont-ds.xml" was rolled back with failure message {"JBAS014671: Failed services" => {"jboss.deployment.unit.\"ont-ds.xml\".PARSE" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"ont-ds.xml\".PARSE: Failed to process phase PARSE of deployment \"ont-ds.xml\""}}
22:38:53,518 INFO [org.jboss.as.connector.subsystems.datasources] (MSC service thread 1-5) JBAS010409: Unbound data source [PMBootStrapDS]
22:38:53,534 INFO [org.jboss.as.server.deployment] (MSC service thread 1-8) JBAS015877: Stopped deployment sqljdbc4.jar in 30ms
22:38:53,518 INFO [org.jboss.as.server.deployment] (MSC service thread 1-4) JBAS015877: Stopped deployment postgresql-9.2-1002.jdbc4.jar in 9ms
22:38:53,534 INFO [org.jboss.as.server.deployment] (MSC service thread 1-7) JBAS015877: Stopped deployment ont-ds.xml in 1ms
22:38:53,550 INFO [org.jboss.as.server.deployment] (MSC service thread 1-3) JBAS015877: Stopped deployment ojdbc6.jar in 8ms
22:38:53,534 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015871: Deploy of deployment "ojdbc6.jar" was rolled back with no failure message
22:38:53,550 INFO [org.jboss.as.server.deployment] (MSC service thread 1-5) JBAS015877: Stopped deployment pm-ds.xml in 22ms
22:38:53,550 INFO [org.jboss.as.server] (DeploymentScanner-threads - 2) JBAS015871: Deploy of deployment "i2b2.war" was rolled back with no failure message
22:38:53,612 INFO [org.jboss.as.webservices] (MSC service thread 1-3) JBAS015540: Stopping service jboss.ws.endpoint."i2b2.war"."edu.harvard.i2b2.crc.loader.ws.RestfulService"
22:38:53,612 INFO [org.jboss.ws.common.management.DefaultEndpointRegistry] (MSC service thread 1-3) remove: jboss.ws:context=i2b2,endpoint=edu.harvard.i2b2.crc.loader.ws.RestfulService
22:38:53,628 INFO [org.jboss.as.webservices] (MSC service thread 1-7) JBAS015540: Stopping service jboss.ws.port-component-link
22:38:53,830 INFO [org.jboss.as.server.deployment] (MSC service thread 1-6) JBAS015877: Stopped deployment i2b2.war in 272ms
22:38:53,830 INFO [org.jboss.as.controller] (DeploymentScanner-threads - 2) JBAS014774: Service status report
JBAS014777: Services which failed to start: service jboss.deployment.unit."ont-ds.xml".PARSE: org.jboss.msc.service.StartException in service jboss.deployment.unit."ont-ds.xml".PARSE: Failed to process phase PARSE of deployment "ont-ds.xml"
22:38:53,830 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS014654: Composite operation was rolled back
22:38:53,846 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS014654: Composite operation was rolled back
22:38:53,846 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) {"JBAS014653: Composite operation failed and was rolled back. Steps that failed:" => {"Operation step-2" => {"JBAS014671: Failed services" => {"jboss.deployment.unit.\"ont-ds.xml\".PARSE" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"ont-ds.xml\".PARSE: Failed to process phase PARSE of deployment \"ont-ds.xml\""}}}}
22:38:53,846 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS014654: Composite operation was rolled back
22:38:53,862 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS014654: Composite operation was rolled back
22:38:53,862 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 1) JBAS014654: Composite operation was rolled back
--------------------
any help please?
Phillips, Lori C.
Jan 4, 2016, 2:59:43 PM1/4/16
to i2b2-ins...@googlegroups.com
Try renaming the .failed file .dodeploy and try again.
--
You received this message because you are subscribed to the Google Groups "i2b2 Install Help" group.
To unsubscribe from this group and stop receiving emails from it, send an email to
i2b2-install-h...@googlegroups.com.
For more options, visit https://groups.google.com/d/optout.
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
Alaa Alarfaj
Jan 4, 2016, 3:18:12 PM1/4/16
to i2b2 Install Help
Every .failed file in the deployment folder is working after rename it to .dodeploy except the ontology cell.
Any new suggestions?
Any new suggestions?
...
Alaa Alarfaj
Jan 4, 2016, 3:21:16 PM1/4/16
to i2b2 Install Help
After trying rename ont-ds.xml.failed to .dodeploy, the following errors occurs:
23:18:35,051 INFO [org.jboss.as.server.deployment] (MSC service thread 1-4) JBAS015876: Starting deployment of "ont-ds.xml"
23:18:35,067 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-6) MSC00001: Failed to start service jboss.deployment.unit."ont-ds.xml".PARSE: org.jboss.msc.service.StartException in service jboss.deployment.unit."ont-ds.xml".PARSE: Failed to process phase PARSE of deployment "ont-ds.xml"
23:18:35,051 INFO [org.jboss.as.server.deployment] (MSC service thread 1-4) JBAS015876: Starting deployment of "ont-ds.xml"
23:18:35,067 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-6) MSC00001: Failed to start service jboss.deployment.unit."ont-ds.xml".PARSE: org.jboss.msc.service.StartException in service jboss.deployment.unit."ont-ds.xml".PARSE: Failed to process phase PARSE of deployment "ont-ds.xml"
23:18:35,098 INFO [org.jboss.as.server] (DeploymentScanner-threads - 1) JBAS015870: Deploy of deployment "ont-ds.xml" was rolled back with failure message {"JBAS014671: Failed services" => {"jboss.deployment.unit.\"ont-ds.xml\".PARSE" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"ont-ds.xml\".PARSE: Failed to process phase PARSE of deployment \"ont-ds.xml\""}}
23:18:35,098 INFO [org.jboss.as.server.deployment] (MSC service thread 1-5) JBAS015877: Stopped deployment ont-ds.xml in 0ms
23:18:35,098 INFO [org.jboss.as.controller] (DeploymentScanner-threads - 1) JBAS014774: Service status report
23:18:35,098 INFO [org.jboss.as.server.deployment] (MSC service thread 1-5) JBAS015877: Stopped deployment ont-ds.xml in 0ms
23:18:35,098 INFO [org.jboss.as.controller] (DeploymentScanner-threads - 1) JBAS014774: Service status report
JBAS014777: Services which failed to start: service jboss.deployment.unit."ont-ds.xml".PARSE: org.jboss.msc.service.StartException in service jboss.deployment.unit."ont-ds.xml".PARSE: Failed to process phase PARSE of deployment "ont-ds.xml"
23:18:35,113 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 2) {"JBAS014653: Composite operation failed and was rolled back. Steps that failed:" => {"Operation step-2" => {"JBAS014671: Failed services" => {"jboss.deployment.unit.\"ont-ds.xml\".PARSE" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"ont-ds.xml\".PARSE: Failed to process phase PARSE of deployment \"ont-ds.xml\""}}}}
portName={<a href="http://ws.loader.crc.i2b2.harvard.edu/%7DRestfulServicePort" target="_blank" rel="nofollow" onmousedown="this.href='http://www.google.com/url?q\75http%3A%2F%2Fws.loader.crc.i2b2.harvard.edu%2F%257DRestfulServicePort\46sa
Luke Rasmussen
Jan 4, 2016, 3:23:04 PM1/4/16
to i2b2-ins...@googlegroups.com
From the error it looks like the XML file is invalid.
Caused by: org.jboss.as.server.deployment.DeploymentUnitProcessingException: String '--' not allowed in comment (missing '>'?)
at [row,col {unknown-source}]: [41,6]
at [row,col {unknown-source}]: [41,6]
--
Message has been deleted
Florian Endel
Jan 4, 2016, 4:15:49 PM1/4/16
to i2b2-ins...@googlegroups.com
Are there any other services running?
According to the first error message port 9090 is already in use:
22:38:47,076 ERROR [org.apache.coyote.http11.Http11Protocol] (MSC
service thread 1-2) Error initializing endpoint:
java.net.BindException: Address already in use: JVM_Bind
/127.0.0.1:9090
On Mon, Jan 4, 2016 at 9:34 PM, Alaa Alarfaj <alaa....@gmail.com> wrote:
> But the xml file is coming with i2b2 server code.
>
> في الاثنين، ٤ يناير، ٢٠١٦, Luke Rasmussen <luke.ra...@northwestern.edu>
> كتب:
>> You received this message because you are subscribed to a topic in the
>> https://groups.google.com/d/topic/i2b2-install-help/6YfEOZGx7AQ/unsubscribe.
>> To unsubscribe from this group and all its topics, send an email to
According to the first error message port 9090 is already in use:
22:38:47,076 ERROR [org.apache.coyote.http11.Http11Protocol] (MSC
service thread 1-2) Error initializing endpoint:
java.net.BindException: Address already in use: JVM_Bind
/127.0.0.1:9090
> But the xml file is coming with i2b2 server code.
>
> في الاثنين، ٤ يناير، ٢٠١٦, Luke Rasmussen <luke.ra...@northwestern.edu>
> كتب:
>> Google Groups "i2b2 Install Help" group.
>> To unsubscribe from this topic, visit
>> https://groups.google.com/d/topic/i2b2-install-help/6YfEOZGx7AQ/unsubscribe.
>> To unsubscribe from this group and all its topics, send an email to
Message has been deleted
Alaa Alarfaj
Jan 5, 2016, 1:58:19 AM1/5/16
to i2b2 Install Help
It works fine now.
Thank you everyone.
The new error now is in deploying the crc cell.
09:48:27,765 INFO [org.jboss.as.server.deployment] (MSC service thread 1-6) JBAS015876: Starting deployment of "crc-ds.xml"
09:48:27,781 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-2) MSC00001: Failed to start service jboss.deployment.unit."crc-ds.xml".PARSE: org.jboss.msc.service.StartException in service jboss.deployment.unit."crc-ds.xml".PARSE: Failed to process phase PARSE of deployment "crc-ds.xml"
Thank you everyone.
The new error now is in deploying the crc cell.
09:48:27,765 INFO [org.jboss.as.server.deployment] (MSC service thread 1-6) JBAS015876: Starting deployment of "crc-ds.xml"
09:48:27,781 ERROR [org.jboss.msc.service.fail] (MSC service thread 1-2) MSC00001: Failed to start service jboss.deployment.unit."crc-ds.xml".PARSE: org.jboss.msc.service.StartException in service jboss.deployment.unit."crc-ds.xml".PARSE: Failed to process phase PARSE of deployment "crc-ds.xml"
at org.jboss.as.server.deployment.DeploymentUnitPhaseService.start(DeploymentUnitPhaseService.java:119) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.startService(ServiceControllerImpl.java:1811) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at org.jboss.msc.service.ServiceControllerImpl$StartTask.run(ServiceControllerImpl.java:1746) [jboss-msc-1.0.2.GA.jar:1.0.2.GA]
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) [rt.jar:1.6.0_45]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) [rt.jar:1.6.0_45]
at java.lang.Thread.run(Thread.java:662) [rt.jar:1.6.0_45]Caused by: org.jboss.as.server.deployment.DeploymentUnitProcessingException: Received non-all-whitespace CHARACTERS or CDATA event in nextTag(). at [row,col {unknown-source}]: [95,0]
at org.jboss.as.connector.deployers.processors.DsXmlDeploymentParsingProcessor.deploy(DsXmlDeploymentParsingProcessor.java:85)
at org.jboss.as.server.deployment.DeploymentUnitPhaseService.start(DeploymentUnitPhaseService.java:113) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
... 5 more
Caused by: com.ctc.wstx.exc.WstxParsingException: Received non-all-whitespace CHARACTERS or CDATA event in nextTag().at [row,col {unknown-source}]: [95,0]
at com.ctc.wstx.sr.StreamScanner.constructWfcException(StreamScanner.java:606)
at com.ctc.wstx.sr.StreamScanner.throwParseError(StreamScanner.java:479)
at com.ctc.wstx.sr.StreamScanner.throwParseError(StreamScanner.java:464)
at com.ctc.wstx.sr.BasicStreamReader.nextTag(BasicStreamReader.java:1137)
at org.jboss.jca.common.metadata.ds.DsParser.parseDataSources(DsParser.java:145)
at org.jboss.jca.common.metadata.ds.DsParser.parse(DsParser.java:119)
at org.jboss.jca.common.metadata.ds.DsParser.parse(DsParser.java:82)
at org.jboss.as.connector.deployers.processors.DsXmlDeploymentParsingProcessor.deploy(DsXmlDeploymentParsingProcessor.java:80)
... 6 more
09:48:27,812 INFO [org.jboss.as.server] (DeploymentScanner-threads - 1) JBAS015870: Deploy of deployment "crc-ds.xml" was rolled back with failure message{"JBAS014671: Failed services" => {"jboss.deployment.unit.\"crc-ds.xml\".PARSE" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"crc-ds.xml\".PARSE: Failed to process phase PARSE of deployment \"crc-ds.xml\""}}
09:48:27,812 INFO [org.jboss.as.server.deployment] (MSC service thread 1-7) JBAS015877: Stopped deployment crc-ds.xml in 2ms
09:48:27,812 INFO [org.jboss.as.controller] (DeploymentScanner-threads - 1) JBAS014774: Service status reportJBAS014777: Services which failed to start: servicejboss.deployment.unit."crc-ds.xml".PARSE: org.jboss.msc.service.StartException in service jboss.deployment.unit."crc-ds.xml".PARSE: Failed to process phase PARSEof deployment "crc-ds.xml"
09:48:27,828 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 2) {"JBAS014653: Composite operation failed and was rolled back. Stepsthat failed:" => {"Operation step-2" => {"JBAS014671: Failed services" => {"jboss.deployment.unit.\"crc-ds.xml\".PARSE" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"crc-ds.xml\".PARSE: Failed to process phase PARSE of deployment \"crc-ds.xml\""}}}}
I try to change .failed to .dodeploy but it fails.
what this error means? "Composite operation failed and was rolled back"
Thanks a lot.
Alaa
09:48:27,812 INFO [org.jboss.as.server.deployment] (MSC service thread 1-7) JBAS015877: Stopped deployment crc-ds.xml in 2ms
09:48:27,812 INFO [org.jboss.as.controller] (DeploymentScanner-threads - 1) JBAS014774: Service status reportJBAS014777: Services which failed to start: servicejboss.deployment.unit."crc-ds.xml".PARSE: org.jboss.msc.service.StartException in service jboss.deployment.unit."crc-ds.xml".PARSE: Failed to process phase PARSEof deployment "crc-ds.xml"
09:48:27,828 ERROR [org.jboss.as.server.deployment.scanner] (DeploymentScanner-threads - 2) {"JBAS014653: Composite operation failed and was rolled back. Stepsthat failed:" => {"Operation step-2" => {"JBAS014671: Failed services" => {"jboss.deployment.unit.\"crc-ds.xml\".PARSE" => "org.jboss.msc.service.StartException in service jboss.deployment.unit.\"crc-ds.xml\".PARSE: Failed to process phase PARSE of deployment \"crc-ds.xml\""}}}}
I try to change .failed to .dodeploy but it fails.
what this error means? "Composite operation failed and was rolled back"
Thanks a lot.
Alaa
Reply all
Reply to author
Forward
0 new messages