Humann2 in qiime2

[Seb]

Hello,

I am trying to install the humann2 plugin for qiime2. I have qiime2 installed using conda in a separate env as suggested by qiime2. I also tried it in the qiime2 virtual box version and get the same error. Both are the most recent versions of qiime2 (2017.9).

I followed your instructions(https://github.com/wasade/q2-humann2) and get the following error:

Collecting https://github.com/wasade/q2-humann2/archive/master.zip
Downloading https://github.com/wasade/q2-humann2/archive/master.zip
Collecting qiime>=2.0.0 (from q2-humann2==0.0.2)
Could not find a version that satisfies the requirement qiime>=2.0.0 (from q2-humann2==0.0.2) (from versions: 1.7.0.dev0, 1.8.0, 1.9.0, 1.9.1)
No matching distribution found for qiime>=2.0.0 (from q2-humann2==0.0.2)

When trying to run the commands (qiime2 humann2 ....) it does not recognize "qiime2" to be a command. Suppose that this is due to the above error?

Thanks a lot for any advice on how to proceed!

P.S.: Sorry for opening this also as an issue on github. I read afterwards that you prefer issues to be posted here.

[Lauren McIver]

Hello,

The humann2 plugin for qiime2 was created by the qiime2 developers so I am sorry I will not be much help. However, I did try out the process and can confirm that I also see the same error you are seeing. If it sounds okay to you I can forward your email to a qiime2 developer (one I believe worked on the humann2 plugin) then we can figure out what might be going on.

Thanks,

Lauren

 

[sebme...@googlemail.com]

Dear Lauren,

thanks for your reply and for confirming my issue. I would appreciate if you forward this issue.

All the best,

Sebastian

[Lauren McIver]

Hi Sebastian - If you would like to send me your email address (feel free to email me directly), I will cc you on the forward to the qimme2 developer asking about the plugin. 

Thanks,

Lauren