Hi,
I found one of the important bacteria (Dolosigranulum
pigrum) in my data set contributes to several MetaCyc pathways. However, when I use the legacy KEGG database for the same data set, this bacterium does not contribute to any KEGG functional pathway shown in the resulting merged pathway abundance table.
Since the NCBI genome assembly of this bacterium has just been published (2019/07/21), the legacy KEGG database did not include this bacteria. Does it mean I have to order the latest version of KEGG database, if I want to know this bacterium's KEGG functional potential with Humann2? If I obtain the KEGG license, how to use newest KEGG database with Humann2?
Any suggestions would be greatly appreciated. Thanks in advance.
Best regards,
Jessie