Thanks! I'll switch over to linux later on again and try there. In the mean time I found a message from enblend that is worrying me...
enblend: warning: input images to small for coarse mask; switching to fine mask
enblend: info: loading next image: pano0000.tif 1/1
enblend: info: loading next image: pano0001.tif 1/1
enblend: info: loading next image: pano0002.tif 1/1
enblend: info: loading next image: pano0003.tif 1/1
enblend: info: loading next image: pano0004.tif 1/1
enblend: images do not overlap - they will be combined without blending
enblend: use the "-l" flag to force blending with a certain number of levels
enblend: info: loading next image: pano0005.tif 1/1
enblend: images do not overlap - they will be combined without blending
enblend: use the "-l" flag to force blending with a certain number of levels
enblend: info: loading next image: pano0006.tif 1/1
enblend: images do not overlap - they will be combined without blending
enblend: use the "-l" flag to force blending with a certain number of levels
enblend: info: loading next image: pano0007.tif 1/1
enblend: info: loading next image: pano0008.tif 1/1
enblend: info: loading next image: pano0009.tif 1/1
enblend: info: loading next image: pano0010.tif 1/1
enblend: info: loading next image: pano0011.tif 1/1
enblend: info: loading next image: pano0012.tif 1/1
enblend: info: loading next image: pano0013.tif 1/1
enblend: info: loading next image: pano0014.tif 1/1
enblend: info: loading next image: pano0015.tif 1/1
enblend: info: loading next image: pano0016.tif 1/1
enblend: warning: some images are redundant and will not be blended
enblend: info: writing final output
It's especially the last message (redundant images) that worries me. Does this mean that enblend autonomously decides to throw away some images? I guess so, but what can be done about it?