Gadi Game Download
Ingelore Clason
The Graduate Alliance for Diversity and Inclusion (GADI) is a graduate student-led organization devoted to the principles of diversity and inclusion among graduate students in the College of the Liberal Arts at Penn State. GADI is a space for building community, sharing knowledge, and advocating for policies that promote diversity and inclusion for underrepresented students.
GADI has four committees that determine the projects and direction of the alliance. Graduate students interested in joining a committee should email gadi.c...@gmail.com for meeting links and locations.
For example, many students also take advantage of the federal Supplemental Nutrition Assistance Program (SNAP) to gain access to funding to buy produce and food that supports a healthy diet. There are also food pantries around campus for food support.
There is also a Broadband Internet Assistance program to help students pay for internet access, as well as the Emergency Rental Assistance Program (ERAP) to help students experiencing trouble covering the cost of rental housing and/or utilities.
Every spring, GADI recognizes four graduate students for exemplary and exceptional work in the realm of diversity and inclusion. Two graduate students receive $250 each for research that pushes forward our knowledge about DEIB and the ability to make meaningful change for others, and another two graduates receive $250 each for their service to underrepresented and marginalized communities and systems. Self-nominations are welcome in addition to the nominations of others.
To run an nf-core pipeline at NCI Gadi, run the pipeline with -profile singularity,nci_gadi. This will download and launch the nci_gadi.config which has been pre-configured with a setup suitable for the NCI Gadi HPC cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline.
Please be aware that you will need to have a user account, be a member of an Gadi project, and have a service unit allocation to your project in order to use this infrastructure. See the NCI user guide for details on getting access to Gadi.
Please be aware that as of July 2023, NCI Gadi HPC queues do not have external network access. This means you will not be able to pull the workflow code base or containers if you submit your nextflow run command as a job on any of the standard job queues. NCI currently recommends you run your Nextflow head job either in a GNU screen or tmux session from the login node or submit it as a job to the copyq. See the nf-core documentation for instructions on running pipelines offline.
This config currently determines which Gadi queue to submit your task jobs to based on the amount of memory required. For the sake of resource and cost (service unit) efficiency, the following rules are applied by this config:
This config uses the PBS environmental variable $PROJECT to assign a project code to all task job submissions for billing purposes. If you are a member of multiple Gadi projects, you should confirm which project will be charged for your pipeline execution. You can do this using:
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