Conda error to install Barametal Hopsworks.1.0

[kimo...@gmail.com]

Dir,

I have an error to install the new version.1.0

because after several attempts. conda doesn't work.

I physically installed anaconda3 but the hopsworks script stops on the conda error...thank you

ERROR [2019-12-17 22:09:15,236] se.kth.karamel.backend.dag.DagNode: Failed 'conda::install on 10.0.2.15' because '10.0.2.15: Command did not complete: mkdir -p /home/vagrant/.karamel/install ; cd /home/vagrant/.karamel/install; echo $$ > pid; echo '#!/bin/bash

set -eo pipefail

echo $(date '+%H:%M:%S'): 'conda__install' >> order

cat > conda__install.json <<-'END_OF_FILE'

[Theo Kakantousis]

Hi,

You can find and paste here the actual error log under ~/.karamel/install/conda__install.log. 

[kimo...@gmail.com]

Hi Kakantousia,

Here conda_install.log

Starting Chef Infra Client, version 15.5.17 [0m

resolving cookbooks for run list: ["conda::install"] [0m

Synchronizing Cookbooks: [0m

- magic_shell (1.0.0) [0m

- conda (1.1.0) [0m

- ulimit (1.1.0) [0m

- homebrew (5.0.8) [0m

- java (4.3.0) [0m

- windows (6.0.1) [0m

Installing Cookbook Gems: [0m

Compiling Cookbooks... [0m

Converging 20 resources [0m

Recipe: conda::install [0m

* apt_package[bzip2, vim, iftop, htop, iotop, rsync] action install (up to date)

* group[anaconda] action create (up to date)

* linux_user[anaconda] action create (skipped due to not_if)

* directory[/srv/hops] action create (skipped due to not_if)

* directory[/srv/hops/anaconda] action create (skipped due to not_if)

* remote_file[/tmp/chef-solo/Anaconda3-2019.10-Linux-x86_64.sh] action create_if_missing (up to date)

* template[/home/anaconda/.condarc] action create (up to date)

* bash[run_conda_installer] action run (skipped due to not_if)

* link[/srv/hops/anaconda/anaconda] action create (up to date)

* bash[run_conda_installer_#{d}] action run

[32m- execute "bash" "/tmp/chef-script20191218-29731-16p5lsv" [0m

[0m * link[/srv/hops/anaconda/anaconda-3-2019.10/envs] action create

[32m- create symlink at /srv/hops/anaconda/anaconda-3-2019.10/envs to /srv/hops/anaconda/envs [0m

[32m- change owner from 'root' to 'anaconda' [0m

[32m- change group from 'root' to 'anaconda' [0m

[0m * bash[run_conda_installer_#{d}] action run

[32m- execute "bash" "/tmp/chef-script20191218-29731-yenacr" [0m

[0m * link[/srv/hops/anaconda/anaconda-3-2019.10/pkgs] action create

[32m- create symlink at /srv/hops/anaconda/anaconda-3-2019.10/pkgs to /srv/hops/anaconda/pkgs [0m

[32m- change owner from 'root' to 'anaconda' [0m

[32m- change group from 'root' to 'anaconda' [0m

[0m * magic_shell_environment[PATH] action add

Recipe: <Dynamically Defined Resource> [0m

* file[/etc/profile.d/PATH.sh] action create (up to date)

(up to date)

Recipe: conda::install [0m

* ulimit_domain[anaconda] action create

Recipe: <Dynamically Defined Resource> [0m

* ulimit_rule[ulimit_rule[anaconda:nice-hard--10]] action createCreate: {"anaconda"=>{"nice"=>{"hard"=>-10}}}

(up to date)

* ulimit_rule[ulimit_rule[anaconda:nice-soft--10]] action createCreate: {"anaconda"=>{"nice"=>{"hard"=>-10, "soft"=>-10}}}

(up to date)

* template[/etc/security/limits.d/anaconda.conf] action create (up to date)

(up to date)

Recipe: conda::install [0m

* template[/home/anaconda/hops-system-environment.yml] action create (up to date)

* directory[/home/anaconda/.conda] action create (up to date)

* directory[/home/anaconda/.conda/pkgs] action create (up to date)

* file[/home/anaconda/.conda/environments.txt] action create (up to date)

* bash[update_conda] action run

[0m

================================================================================ [0m

[31mError executing action `run` on resource 'bash[update_conda]' [0m

================================================================================ [0m

[0m Mixlib::ShellOut::ShellCommandFailed [0m

------------------------------------ [0m

Expected process to exit with [0], but received '126'

[0m ---- Begin output of "bash" "/tmp/chef-script20191218-29731-1xdluo6" ----

[0m STDOUT:

[0m STDERR: /tmp/chef-script20191218-29731-1xdluo6: line 1: /srv/hops/anaconda/anaconda/bin/conda: Is a directory

[0m /tmp/chef-script20191218-29731-1xdluo6: line 2: /srv/hops/anaconda/anaconda/bin/conda: Is a directory

[0m /tmp/chef-script20191218-29731-1xdluo6: line 3: /srv/hops/anaconda/anaconda/bin/conda: Is a directory

[0m ---- End output of "bash" "/tmp/chef-script20191218-29731-1xdluo6" ----

[0m Ran "bash" "/tmp/chef-script20191218-29731-1xdluo6" returned 126 [0m

[0m Resource Declaration: [0m

--------------------- [0m

# In /tmp/chef-solo/cookbooks/conda/recipes/install.rb

[0m

[0m 185: bash "update_conda" do

[0m 186: user node['conda']['user']

[0m 187: group node['conda']['group']

[0m 188: environment ({'HOME' => "/home/#{node['conda']['user']}"})

[0m 189: cwd "/home/#{node['conda']['user']}"

[0m 190: retries 1

[0m 191: retry_delay 10

[0m 192: code <<-EOF

[0m 193: #{node['conda']['base_dir']}/bin/conda install --no-deps pycryptosat libcryptominisat

[0m 194: #{node['conda']['base_dir']}/bin/conda config --set sat_solver pycryptosat

[0m 195: #{node['conda']['base_dir']}/bin/conda update anaconda -y -q

[0m 196: EOF

[0m 197: end

[0m

[0m Compiled Resource: [0m

------------------ [0m

# Declared in /tmp/chef-solo/cookbooks/conda/recipes/install.rb:185:in `from_file'

[0m

[0m bash("update_conda") do

[0m action [:run]

[0m default_guard_interpreter :default

[0m command nil

[0m backup 5

[0m interpreter "bash"

[0m declared_type :bash

[0m cookbook_name "conda"

[0m recipe_name "install"

[0m user "anaconda"

[0m group "anaconda"

[0m code " /srv/hops/anaconda/anaconda/bin/conda install --no-deps pycryptosat libcryptominisat\n /srv/hops/anaconda/anaconda/bin/conda config --set sat_solver pycryptosat\n /srv/hops/anaconda/anaconda/bin/conda update anaconda -y -q\n"

[0m domain nil

[0m environment {"HOME"=>"/home/anaconda"}

[0m cwd "/home/anaconda"

[0m retries 1

[0m retry_delay 10

[0m end

[0m

[0m System Info: [0m

------------ [0m

chef_version=15.5.17

[0m platform=ubuntu

[0m platform_version=16.04

[0m ruby=ruby 2.6.5p114 (2019-10-01 revision 67812) [x86_64-linux]

[0m program_name=/usr/bin/chef-solo

[0m executable=/opt/chefdk/bin/chef-solo [0m

[0m [0m

Running handlers: [0m

[2019-12-18T11:32:27+00:00] ERROR: Running exception handlers

Running handlers complete

[0m[2019-12-18T11:32:27+00:00] ERROR: Exception handlers complete

Chef Infra Client failed. 4 resources updated in 14 seconds [0m

[2019-12-18T11:32:27+00:00] FATAL: Stacktrace dumped to /tmp/chef-solo/chef-stacktrace.out

[2019-12-18T11:32:27+00:00] FATAL: Please provide the contents of the stacktrace.out file if you file a bug report

[2019-12-18T11:32:27+00:00] FATAL: Mixlib::ShellOut::ShellCommandFailed: bash[update_conda] (conda::install line 185) had an error: Mixlib::ShellOut::ShellCommandFailed: Expected process to exit with [0], but received '126'

---- Begin output of "bash" "/tmp/chef-script20191218-29731-1xdluo6" ----

STDOUT:

STDERR: /tmp/chef-script20191218-29731-1xdluo6: line 1: /srv/hops/anaconda/anaconda/bin/conda: Is a directory

/tmp/chef-script20191218-29731-1xdluo6: line 2: /srv/hops/anaconda/anaconda/bin/conda: Is a directory

/tmp/chef-script20191218-29731-1xdluo6: line 3: /srv/hops/anaconda/anaconda/bin/conda: Is a directory

---- End output of "bash" "/tmp/chef-script20191218-29731-1xdluo6" ----

Ran "bash" "/tmp/chef-script20191218-29731-1xdluo6" returned 126