hoomd version installed by conda

Adil Mughal

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Aug 13, 2022, 10:02:01 AM8/13/22

to hoomd-users

Dear hoomd experts,

I'm currently trying to get started with hoomd. I'm using conda to install hoomd as follows:

> conda install -n hoomdtest -c conda-forge hoomd

When I run

> conda list

I get the following for hoomd:

hoomd 2.9.6 cpu_py38ha309974_0 conda-forge

that is version 2.9.6.

However, the instructions for hoomd on the website (http://glotzerlab.engin.umich.edu/hoomd-blue/) are clearly for version 3 and above.

Can somebody who is managing the conda-install system please update the conda system so that it installs the latest version?

Best wishes

Adil

Tim Moore

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Aug 13, 2022, 2:46:31 PM8/13/22

to hoomd...@googlegroups.com

Hi Adil,

Conda will pull the latest build. That command will install hoomd into your hoomdtest conda environment. Is that your active environment? Do you have hoomd v2 i stalled in whichever environment you are running those commands from?

Tim

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Tim Moore

Adil Mughal

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Aug 13, 2022, 4:25:36 PM8/13/22

to hoomd-users

Hi Tim,

Many thanks for writting back to me. I reproduce below all the steps I take to create the enviroment and install hoomd-blue (and the output from the terminal)

As you can see I end up with version 2. Wheras, I would have expected version 3 - which is what the online manual/website teaches you to use. Hence in order to be able to learn to use hoomd-blue I need to be able to instal version 3!

Best wishes

Adil

==========================================================================================================================

(base) adil@adil-desktop:~$ conda create -n hoomdtest python=3.8.5 anaconda
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

environment location: /home/adil/miniconda3/envs/hoomdtest

added / updated specs:
- anaconda
- python=3.8.5

The following NEW packages will be INSTALLED:

_libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main
alabaster pkgs/main/noarch::alabaster-0.7.12-py_0
anaconda pkgs/main/linux-64::anaconda-2020.11-py38_0
anaconda-client pkgs/main/linux-64::anaconda-client-1.7.2-py38_0
anaconda-project pkgs/main/noarch::anaconda-project-0.8.4-py_0
argh pkgs/main/linux-64::argh-0.26.2-py38_0
argon2-cffi pkgs/main/linux-64::argon2-cffi-20.1.0-py38h7b6447c_1
asn1crypto pkgs/main/noarch::asn1crypto-1.4.0-py_0
astroid pkgs/main/linux-64::astroid-2.4.2-py38_0
astropy pkgs/main/linux-64::astropy-4.0.2-py38h7b6447c_0
async_generator pkgs/main/noarch::async_generator-1.10-py_0
atomicwrites pkgs/main/noarch::atomicwrites-1.4.0-py_0
attrs pkgs/main/noarch::attrs-20.3.0-pyhd3eb1b0_0
autopep8 pkgs/main/noarch::autopep8-1.5.4-py_0
babel pkgs/main/noarch::babel-2.8.1-pyhd3eb1b0_0
backcall pkgs/main/noarch::backcall-0.2.0-py_0
backports pkgs/main/noarch::backports-1.0-py_2
backports.shutil_~ pkgs/main/linux-64::backports.shutil_get_terminal_size-1.0.0-py38_2
beautifulsoup4 pkgs/main/noarch::beautifulsoup4-4.9.3-pyhb0f4dca_0
bitarray pkgs/main/linux-64::bitarray-1.6.1-py38h27cfd23_0
bkcharts pkgs/main/linux-64::bkcharts-0.2-py38_0
blas pkgs/main/linux-64::blas-1.0-mkl
bleach pkgs/main/noarch::bleach-3.2.1-py_0
blosc pkgs/main/linux-64::blosc-1.20.1-hd408876_0
bokeh pkgs/main/linux-64::bokeh-2.2.3-py38_0
boto pkgs/main/linux-64::boto-2.49.0-py38_0
bottleneck pkgs/main/linux-64::bottleneck-1.3.2-py38heb32a55_1
brotlipy pkgs/main/linux-64::brotlipy-0.7.0-py38h7b6447c_1000
bzip2 pkgs/main/linux-64::bzip2-1.0.8-h7b6447c_0
ca-certificates pkgs/main/linux-64::ca-certificates-2020.10.14-0
cairo pkgs/main/linux-64::cairo-1.14.12-h8948797_3
certifi pkgs/main/noarch::certifi-2020.6.20-pyhd3eb1b0_3
cffi pkgs/main/linux-64::cffi-1.14.3-py38he30daa8_0
chardet pkgs/main/linux-64::chardet-3.0.4-py38_1003
click pkgs/main/noarch::click-7.1.2-py_0
cloudpickle pkgs/main/noarch::cloudpickle-1.6.0-py_0
clyent pkgs/main/linux-64::clyent-1.2.2-py38_1
colorama pkgs/main/noarch::colorama-0.4.4-py_0
contextlib2 pkgs/main/noarch::contextlib2-0.6.0.post1-py_0
cryptography pkgs/main/linux-64::cryptography-3.1.1-py38h1ba5d50_0
curl pkgs/main/linux-64::curl-7.71.1-hbc83047_1
cycler pkgs/main/linux-64::cycler-0.10.0-py38_0
cython pkgs/main/linux-64::cython-0.29.21-py38he6710b0_0
cytoolz pkgs/main/linux-64::cytoolz-0.11.0-py38h7b6447c_0
dask pkgs/main/noarch::dask-2.30.0-py_0
dask-core pkgs/main/noarch::dask-core-2.30.0-py_0
dbus pkgs/main/linux-64::dbus-1.13.18-hb2f20db_0
decorator pkgs/main/noarch::decorator-4.4.2-py_0
defusedxml pkgs/main/noarch::defusedxml-0.6.0-py_0
diff-match-patch pkgs/main/noarch::diff-match-patch-20200713-py_0
distributed pkgs/main/linux-64::distributed-2.30.1-py38h06a4308_0
docutils pkgs/main/linux-64::docutils-0.16-py38_1
entrypoints pkgs/main/linux-64::entrypoints-0.3-py38_0
et_xmlfile pkgs/main/noarch::et_xmlfile-1.0.1-py_1001
expat pkgs/main/linux-64::expat-2.2.10-he6710b0_2
fastcache pkgs/main/linux-64::fastcache-1.1.0-py38h7b6447c_0
filelock pkgs/main/noarch::filelock-3.0.12-py_0
flake8 pkgs/main/noarch::flake8-3.8.4-py_0
flask pkgs/main/noarch::flask-1.1.2-py_0
fontconfig pkgs/main/linux-64::fontconfig-2.13.0-h9420a91_0
freetype pkgs/main/linux-64::freetype-2.10.4-h5ab3b9f_0
fribidi pkgs/main/linux-64::fribidi-1.0.10-h7b6447c_0
fsspec pkgs/main/noarch::fsspec-0.8.3-py_0
future pkgs/main/linux-64::future-0.18.2-py38_1
get_terminal_size pkgs/main/linux-64::get_terminal_size-1.0.0-haa9412d_0
gevent pkgs/main/linux-64::gevent-20.9.0-py38h7b6447c_0
glib pkgs/main/linux-64::glib-2.66.1-h92f7085_0
glob2 pkgs/main/noarch::glob2-0.7-py_0
gmp pkgs/main/linux-64::gmp-6.1.2-h6c8ec71_1
gmpy2 pkgs/main/linux-64::gmpy2-2.0.8-py38hd5f6e3b_3
graphite2 pkgs/main/linux-64::graphite2-1.3.14-h23475e2_0
greenlet pkgs/main/linux-64::greenlet-0.4.17-py38h7b6447c_0
gst-plugins-base pkgs/main/linux-64::gst-plugins-base-1.14.0-hbbd80ab_1
gstreamer pkgs/main/linux-64::gstreamer-1.14.0-hb31296c_0
h5py pkgs/main/linux-64::h5py-2.10.0-py38h7918eee_0
harfbuzz pkgs/main/linux-64::harfbuzz-2.4.0-hca77d97_1
hdf5 pkgs/main/linux-64::hdf5-1.10.4-hb1b8bf9_0
heapdict pkgs/main/noarch::heapdict-1.0.1-py_0
html5lib pkgs/main/noarch::html5lib-1.1-py_0
icu pkgs/main/linux-64::icu-58.2-he6710b0_3
idna pkgs/main/noarch::idna-2.10-py_0
imageio pkgs/main/noarch::imageio-2.9.0-py_0
imagesize pkgs/main/noarch::imagesize-1.2.0-py_0
importlib-metadata pkgs/main/noarch::importlib-metadata-2.0.0-py_1
importlib_metadata pkgs/main/noarch::importlib_metadata-2.0.0-1
iniconfig pkgs/main/noarch::iniconfig-1.1.1-py_0
intel-openmp pkgs/main/linux-64::intel-openmp-2020.2-254
intervaltree pkgs/main/noarch::intervaltree-3.1.0-py_0
ipykernel pkgs/main/linux-64::ipykernel-5.3.4-py38h5ca1d4c_0
ipython pkgs/main/linux-64::ipython-7.19.0-py38hb070fc8_0
ipython_genutils pkgs/main/linux-64::ipython_genutils-0.2.0-py38_0
ipywidgets pkgs/main/noarch::ipywidgets-7.5.1-py_1
isort pkgs/main/noarch::isort-5.6.4-py_0
itsdangerous pkgs/main/noarch::itsdangerous-1.1.0-py_0
jbig pkgs/main/linux-64::jbig-2.1-hdba287a_0
jdcal pkgs/main/noarch::jdcal-1.4.1-py_0
jedi pkgs/main/linux-64::jedi-0.17.1-py38_0
jeepney pkgs/main/noarch::jeepney-0.5.0-pyhd3eb1b0_0
jinja2 pkgs/main/noarch::jinja2-2.11.2-py_0
joblib pkgs/main/noarch::joblib-0.17.0-py_0
jpeg pkgs/main/linux-64::jpeg-9b-h024ee3a_2
json5 pkgs/main/noarch::json5-0.9.5-py_0
jsonschema pkgs/main/noarch::jsonschema-3.2.0-py_2
jupyter pkgs/main/linux-64::jupyter-1.0.0-py38_7
jupyter_client pkgs/main/noarch::jupyter_client-6.1.7-py_0
jupyter_console pkgs/main/noarch::jupyter_console-6.2.0-py_0
jupyter_core pkgs/main/linux-64::jupyter_core-4.6.3-py38_0
jupyterlab pkgs/main/noarch::jupyterlab-2.2.6-py_0
jupyterlab_pygmen~ pkgs/main/noarch::jupyterlab_pygments-0.1.2-py_0
jupyterlab_server pkgs/main/noarch::jupyterlab_server-1.2.0-py_0
keyring pkgs/main/linux-64::keyring-21.4.0-py38_1
kiwisolver pkgs/main/linux-64::kiwisolver-1.3.0-py38h2531618_0
krb5 pkgs/main/linux-64::krb5-1.18.2-h173b8e3_0
lazy-object-proxy pkgs/main/linux-64::lazy-object-proxy-1.4.3-py38h7b6447c_0
lcms2 pkgs/main/linux-64::lcms2-2.11-h396b838_0
ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.33.1-h53a641e_7
libarchive pkgs/main/linux-64::libarchive-3.4.2-h62408e4_0
libcurl pkgs/main/linux-64::libcurl-7.71.1-h20c2e04_1
libedit pkgs/main/linux-64::libedit-3.1.20191231-h14c3975_1
libffi pkgs/main/linux-64::libffi-3.3-he6710b0_2
libgcc-ng pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0
libgfortran-ng pkgs/main/linux-64::libgfortran-ng-7.3.0-hdf63c60_0
liblief pkgs/main/linux-64::liblief-0.10.1-he6710b0_0
libllvm10 pkgs/main/linux-64::libllvm10-10.0.1-hbcb73fb_5
libpng pkgs/main/linux-64::libpng-1.6.37-hbc83047_0
libsodium pkgs/main/linux-64::libsodium-1.0.18-h7b6447c_0
libspatialindex pkgs/main/linux-64::libspatialindex-1.9.3-he6710b0_0
libssh2 pkgs/main/linux-64::libssh2-1.9.0-h1ba5d50_1
libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0
libtiff pkgs/main/linux-64::libtiff-4.1.0-h2733197_1
libtool pkgs/main/linux-64::libtool-2.4.6-h7b6447c_1005
libuuid pkgs/main/linux-64::libuuid-1.0.3-h1bed415_2
libxcb pkgs/main/linux-64::libxcb-1.14-h7b6447c_0
libxml2 pkgs/main/linux-64::libxml2-2.9.10-hb55368b_3
libxslt pkgs/main/linux-64::libxslt-1.1.34-hc22bd24_0
llvmlite pkgs/main/linux-64::llvmlite-0.34.0-py38h269e1b5_4
locket pkgs/main/linux-64::locket-0.2.0-py38_1
lxml pkgs/main/linux-64::lxml-4.6.1-py38hefd8a0e_0
lz4-c pkgs/main/linux-64::lz4-c-1.9.2-heb0550a_3
lzo pkgs/main/linux-64::lzo-2.10-h7b6447c_2
markupsafe pkgs/main/linux-64::markupsafe-1.1.1-py38h7b6447c_0
matplotlib pkgs/main/linux-64::matplotlib-3.3.2-0
matplotlib-base pkgs/main/linux-64::matplotlib-base-3.3.2-py38h817c723_0
mccabe pkgs/main/linux-64::mccabe-0.6.1-py38_1
mistune pkgs/main/linux-64::mistune-0.8.4-py38h7b6447c_1000
mkl pkgs/main/linux-64::mkl-2020.2-256
mkl-service pkgs/main/linux-64::mkl-service-2.3.0-py38he904b0f_0
mkl_fft pkgs/main/linux-64::mkl_fft-1.2.0-py38h23d657b_0
mkl_random pkgs/main/linux-64::mkl_random-1.1.1-py38h0573a6f_0
mock pkgs/main/noarch::mock-4.0.2-py_0
more-itertools pkgs/main/noarch::more-itertools-8.6.0-pyhd3eb1b0_0
mpc pkgs/main/linux-64::mpc-1.1.0-h10f8cd9_1
mpfr pkgs/main/linux-64::mpfr-4.0.2-hb69a4c5_1
mpmath pkgs/main/linux-64::mpmath-1.1.0-py38_0
msgpack-python pkgs/main/linux-64::msgpack-python-1.0.0-py38hfd86e86_1
multipledispatch pkgs/main/linux-64::multipledispatch-0.6.0-py38_0
nbclient pkgs/main/noarch::nbclient-0.5.1-py_0
nbconvert pkgs/main/linux-64::nbconvert-6.0.7-py38_0
nbformat pkgs/main/noarch::nbformat-5.0.8-py_0
ncurses pkgs/main/linux-64::ncurses-6.2-he6710b0_1
nest-asyncio pkgs/main/noarch::nest-asyncio-1.4.2-pyhd3eb1b0_0
networkx pkgs/main/noarch::networkx-2.5-py_0
nltk pkgs/main/noarch::nltk-3.5-py_0
nose pkgs/main/linux-64::nose-1.3.7-py38_2
notebook pkgs/main/linux-64::notebook-6.1.4-py38_0
numba pkgs/main/linux-64::numba-0.51.2-py38h0573a6f_1
numexpr pkgs/main/linux-64::numexpr-2.7.1-py38h423224d_0
numpy pkgs/main/linux-64::numpy-1.19.2-py38h54aff64_0
numpy-base pkgs/main/linux-64::numpy-base-1.19.2-py38hfa32c7d_0
numpydoc pkgs/main/noarch::numpydoc-1.1.0-pyhd3eb1b0_1
olefile pkgs/main/noarch::olefile-0.46-py_0
openpyxl pkgs/main/noarch::openpyxl-3.0.5-py_0
openssl pkgs/main/linux-64::openssl-1.1.1h-h7b6447c_0
packaging pkgs/main/noarch::packaging-20.4-py_0
pandas pkgs/main/linux-64::pandas-1.1.3-py38he6710b0_0
pandoc pkgs/main/linux-64::pandoc-2.11-hb0f4dca_0
pandocfilters pkgs/main/linux-64::pandocfilters-1.4.3-py38h06a4308_1
pango pkgs/main/linux-64::pango-1.45.3-hd140c19_0
parso pkgs/main/noarch::parso-0.7.0-py_0
partd pkgs/main/noarch::partd-1.1.0-py_0
patchelf pkgs/main/linux-64::patchelf-0.12-he6710b0_0
path pkgs/main/linux-64::path-15.0.0-py38_0
path.py pkgs/main/noarch::path.py-12.5.0-0
pathlib2 pkgs/main/linux-64::pathlib2-2.3.5-py38_0
pathtools pkgs/main/noarch::pathtools-0.1.2-py_1
patsy pkgs/main/linux-64::patsy-0.5.1-py38_0
pcre pkgs/main/linux-64::pcre-8.44-he6710b0_0
pep8 pkgs/main/linux-64::pep8-1.7.1-py38_0
pexpect pkgs/main/linux-64::pexpect-4.8.0-py38_0
pickleshare pkgs/main/linux-64::pickleshare-0.7.5-py38_1000
pillow pkgs/main/linux-64::pillow-8.0.1-py38he98fc37_0
pip pkgs/main/linux-64::pip-20.2.4-py38h06a4308_0
pixman pkgs/main/linux-64::pixman-0.40.0-h7b6447c_0
pkginfo pkgs/main/linux-64::pkginfo-1.6.1-py38h06a4308_0
pluggy pkgs/main/linux-64::pluggy-0.13.1-py38_0
ply pkgs/main/linux-64::ply-3.11-py38_0
prometheus_client pkgs/main/noarch::prometheus_client-0.8.0-py_0
prompt-toolkit pkgs/main/noarch::prompt-toolkit-3.0.8-py_0
prompt_toolkit pkgs/main/noarch::prompt_toolkit-3.0.8-0
psutil pkgs/main/linux-64::psutil-5.7.2-py38h7b6447c_0
ptyprocess pkgs/main/linux-64::ptyprocess-0.6.0-py38_0
py pkgs/main/noarch::py-1.9.0-py_0
py-lief pkgs/main/linux-64::py-lief-0.10.1-py38h403a769_0
pycodestyle pkgs/main/noarch::pycodestyle-2.6.0-py_0
pycosat pkgs/main/linux-64::pycosat-0.6.3-py38h7b6447c_1
pycparser pkgs/main/noarch::pycparser-2.20-py_2
pycurl pkgs/main/linux-64::pycurl-7.43.0.6-py38h1ba5d50_0
pydocstyle pkgs/main/noarch::pydocstyle-5.1.1-py_0
pyflakes pkgs/main/noarch::pyflakes-2.2.0-py_0
pygments pkgs/main/noarch::pygments-2.7.2-pyhd3eb1b0_0
pylint pkgs/main/linux-64::pylint-2.6.0-py38_0
pyodbc pkgs/main/linux-64::pyodbc-4.0.30-py38he6710b0_0
pyopenssl pkgs/main/noarch::pyopenssl-19.1.0-py_1
pyparsing pkgs/main/noarch::pyparsing-2.4.7-py_0
pyqt pkgs/main/linux-64::pyqt-5.9.2-py38h05f1152_4
pyrsistent pkgs/main/linux-64::pyrsistent-0.17.3-py38h7b6447c_0
pysocks pkgs/main/linux-64::pysocks-1.7.1-py38_0
pytables pkgs/main/linux-64::pytables-3.6.1-py38h9fd0a39_0
pytest pkgs/main/linux-64::pytest-6.1.1-py38_0
python pkgs/main/linux-64::python-3.8.5-h7579374_1
python-dateutil pkgs/main/noarch::python-dateutil-2.8.1-py_0
python-jsonrpc-se~ pkgs/main/noarch::python-jsonrpc-server-0.4.0-py_0
python-language-s~ pkgs/main/noarch::python-language-server-0.35.1-py_0
python-libarchive~ pkgs/main/noarch::python-libarchive-c-2.9-py_0
pytz pkgs/main/noarch::pytz-2020.1-py_0
pywavelets pkgs/main/linux-64::pywavelets-1.1.1-py38h7b6447c_2
pyxdg pkgs/main/noarch::pyxdg-0.27-pyhd3eb1b0_0
pyyaml pkgs/main/linux-64::pyyaml-5.3.1-py38h7b6447c_1
pyzmq pkgs/main/linux-64::pyzmq-19.0.2-py38he6710b0_1
qdarkstyle pkgs/main/noarch::qdarkstyle-2.8.1-py_0
qt pkgs/main/linux-64::qt-5.9.7-h5867ecd_1
qtawesome pkgs/main/noarch::qtawesome-1.0.1-py_0
qtconsole pkgs/main/noarch::qtconsole-4.7.7-py_0
qtpy pkgs/main/noarch::qtpy-1.9.0-py_0
readline pkgs/main/linux-64::readline-8.0-h7b6447c_0
regex pkgs/main/linux-64::regex-2020.10.15-py38h7b6447c_0
requests pkgs/main/noarch::requests-2.24.0-py_0
ripgrep pkgs/main/linux-64::ripgrep-12.1.1-0
rope pkgs/main/noarch::rope-0.18.0-py_0
rtree pkgs/main/linux-64::rtree-0.9.4-py38_1
ruamel_yaml pkgs/main/linux-64::ruamel_yaml-0.15.87-py38h7b6447c_1
scikit-image pkgs/main/linux-64::scikit-image-0.17.2-py38hdf5156a_0
scikit-learn pkgs/main/linux-64::scikit-learn-0.23.2-py38h0573a6f_0
scipy pkgs/main/linux-64::scipy-1.5.2-py38h0b6359f_0
seaborn pkgs/main/noarch::seaborn-0.11.0-py_0
secretstorage pkgs/main/linux-64::secretstorage-3.1.2-py38_0
send2trash pkgs/main/linux-64::send2trash-1.5.0-py38_0
setuptools pkgs/main/linux-64::setuptools-50.3.1-py38h06a4308_1
simplegeneric pkgs/main/linux-64::simplegeneric-0.8.1-py38_2
singledispatch pkgs/main/noarch::singledispatch-3.4.0.3-py_1001
sip pkgs/main/linux-64::sip-4.19.13-py38he6710b0_0
six pkgs/main/linux-64::six-1.15.0-py38h06a4308_0
snowballstemmer pkgs/main/noarch::snowballstemmer-2.0.0-py_0
sortedcollections pkgs/main/noarch::sortedcollections-1.2.1-py_0
sortedcontainers pkgs/main/noarch::sortedcontainers-2.2.2-py_0
soupsieve pkgs/main/noarch::soupsieve-2.0.1-py_0
sphinx pkgs/main/noarch::sphinx-3.2.1-py_0
sphinxcontrib pkgs/main/linux-64::sphinxcontrib-1.0-py38_1
sphinxcontrib-app~ pkgs/main/noarch::sphinxcontrib-applehelp-1.0.2-py_0
sphinxcontrib-dev~ pkgs/main/noarch::sphinxcontrib-devhelp-1.0.2-py_0
sphinxcontrib-htm~ pkgs/main/noarch::sphinxcontrib-htmlhelp-1.0.3-py_0
sphinxcontrib-jsm~ pkgs/main/noarch::sphinxcontrib-jsmath-1.0.1-py_0
sphinxcontrib-qth~ pkgs/main/noarch::sphinxcontrib-qthelp-1.0.3-py_0
sphinxcontrib-ser~ pkgs/main/noarch::sphinxcontrib-serializinghtml-1.1.4-py_0
sphinxcontrib-web~ pkgs/main/noarch::sphinxcontrib-websupport-1.2.4-py_0
spyder pkgs/main/linux-64::spyder-4.1.5-py38_0
spyder-kernels pkgs/main/linux-64::spyder-kernels-1.9.4-py38_0
sqlalchemy pkgs/main/linux-64::sqlalchemy-1.3.20-py38h7b6447c_0
sqlite pkgs/main/linux-64::sqlite-3.33.0-h62c20be_0
statsmodels pkgs/main/linux-64::statsmodels-0.12.0-py38h7b6447c_0
sympy pkgs/main/linux-64::sympy-1.6.2-py38h06a4308_1
tbb pkgs/main/linux-64::tbb-2020.3-hfd86e86_0
tblib pkgs/main/noarch::tblib-1.7.0-py_0
terminado pkgs/main/linux-64::terminado-0.9.1-py38_0
testpath pkgs/main/noarch::testpath-0.4.4-py_0
threadpoolctl pkgs/main/noarch::threadpoolctl-2.1.0-pyh5ca1d4c_0
tifffile pkgs/main/linux-64::tifffile-2020.10.1-py38hdd07704_2
tk pkgs/main/linux-64::tk-8.6.10-hbc83047_0
toml pkgs/main/noarch::toml-0.10.1-py_0
toolz pkgs/main/noarch::toolz-0.11.1-py_0
tornado pkgs/main/linux-64::tornado-6.0.4-py38h7b6447c_1
tqdm pkgs/main/noarch::tqdm-4.50.2-py_0
traitlets pkgs/main/noarch::traitlets-5.0.5-py_0
typing_extensions pkgs/main/noarch::typing_extensions-3.7.4.3-py_0
ujson pkgs/main/linux-64::ujson-4.0.1-py38he6710b0_0
unicodecsv pkgs/main/linux-64::unicodecsv-0.14.1-py38_0
unixodbc pkgs/main/linux-64::unixodbc-2.3.9-h7b6447c_0
urllib3 pkgs/main/noarch::urllib3-1.25.11-py_0
watchdog pkgs/main/linux-64::watchdog-0.10.3-py38_0
wcwidth pkgs/main/noarch::wcwidth-0.2.5-py_0
webencodings pkgs/main/linux-64::webencodings-0.5.1-py38_1
werkzeug pkgs/main/noarch::werkzeug-1.0.1-py_0
wheel pkgs/main/noarch::wheel-0.35.1-py_0
widgetsnbextension pkgs/main/linux-64::widgetsnbextension-3.5.1-py38_0
wrapt pkgs/main/linux-64::wrapt-1.11.2-py38h7b6447c_0
wurlitzer pkgs/main/linux-64::wurlitzer-2.0.1-py38_0
xlrd pkgs/main/noarch::xlrd-1.2.0-py_0
xlsxwriter pkgs/main/noarch::xlsxwriter-1.3.7-py_0
xlwt pkgs/main/linux-64::xlwt-1.3.0-py38_0
xz pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
yaml pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0
yapf pkgs/main/noarch::yapf-0.30.0-py_0
zeromq pkgs/main/linux-64::zeromq-4.3.3-he6710b0_3
zict pkgs/main/noarch::zict-2.0.0-py_0
zipp pkgs/main/noarch::zipp-3.4.0-pyhd3eb1b0_0
zlib pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3
zope pkgs/main/linux-64::zope-1.0-py38_1
zope.event pkgs/main/linux-64::zope.event-4.5.0-py38_0
zope.interface pkgs/main/linux-64::zope.interface-5.1.2-py38h7b6447c_0
zstd pkgs/main/linux-64::zstd-1.4.5-h9ceee32_0

Proceed ([y]/n)? y

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate hoomdtest
#
# To deactivate an active environment, use
#
# $ conda deactivate

(base) adil@adil-desktop:~$ conda activate hoomdtest
(hoomdtest) adil@adil-desktop:~$ conda install -n hoomdtest -c conda-forge hoomd
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

environment location: /home/adil/miniconda3/envs/hoomdtest

added / updated specs:
- hoomd

The following NEW packages will be INSTALLED:

hoomd conda-forge/linux-64::hoomd-2.9.6-cpu_py38ha309974_0
python_abi conda-forge/linux-64::python_abi-3.8-2_cp38

Proceed ([y]/n)? y

Preparing transaction: done
Verifying transaction: done
Executing transaction: done

(hoomdtest) adil@adil-desktop:~$ conda list
# packages in environment at /home/adil/miniconda3/envs/hoomdtest:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main
alabaster 0.7.12 py_0
anaconda 2020.11 py38_0
anaconda-client 1.7.2 py38_0
anaconda-project 0.8.4 py_0
argh 0.26.2 py38_0
argon2-cffi 20.1.0 py38h7b6447c_1
asn1crypto 1.4.0 py_0
astroid 2.4.2 py38_0
astropy 4.0.2 py38h7b6447c_0
async_generator 1.10 py_0
atomicwrites 1.4.0 py_0
attrs 20.3.0 pyhd3eb1b0_0
autopep8 1.5.4 py_0
babel 2.8.1 pyhd3eb1b0_0
backcall 0.2.0 py_0
backports 1.0 py_2
backports.shutil_get_terminal_size 1.0.0 py38_2
beautifulsoup4 4.9.3 pyhb0f4dca_0
bitarray 1.6.1 py38h27cfd23_0
bkcharts 0.2 py38_0
blas 1.0 mkl
bleach 3.2.1 py_0
blosc 1.20.1 hd408876_0
bokeh 2.2.3 py38_0
boto 2.49.0 py38_0
bottleneck 1.3.2 py38heb32a55_1
brotlipy 0.7.0 py38h7b6447c_1000
bzip2 1.0.8 h7b6447c_0
ca-certificates 2020.10.14 0
cairo 1.14.12 h8948797_3
certifi 2020.6.20 pyhd3eb1b0_3
cffi 1.14.3 py38he30daa8_0
chardet 3.0.4 py38_1003
click 7.1.2 py_0
cloudpickle 1.6.0 py_0
clyent 1.2.2 py38_1
colorama 0.4.4 py_0
contextlib2 0.6.0.post1 py_0
cryptography 3.1.1 py38h1ba5d50_0
curl 7.71.1 hbc83047_1
cycler 0.10.0 py38_0
cython 0.29.21 py38he6710b0_0
cytoolz 0.11.0 py38h7b6447c_0
dask 2.30.0 py_0
dask-core 2.30.0 py_0
dbus 1.13.18 hb2f20db_0
decorator 4.4.2 py_0
defusedxml 0.6.0 py_0
diff-match-patch 20200713 py_0
distributed 2.30.1 py38h06a4308_0
docutils 0.16 py38_1
entrypoints 0.3 py38_0
et_xmlfile 1.0.1 py_1001
expat 2.2.10 he6710b0_2
fastcache 1.1.0 py38h7b6447c_0
filelock 3.0.12 py_0
flake8 3.8.4 py_0
flask 1.1.2 py_0
fontconfig 2.13.0 h9420a91_0
freetype 2.10.4 h5ab3b9f_0
fribidi 1.0.10 h7b6447c_0
fsspec 0.8.3 py_0
future 0.18.2 py38_1
get_terminal_size 1.0.0 haa9412d_0
gevent 20.9.0 py38h7b6447c_0
glib 2.66.1 h92f7085_0
glob2 0.7 py_0
gmp 6.1.2 h6c8ec71_1
gmpy2 2.0.8 py38hd5f6e3b_3
graphite2 1.3.14 h23475e2_0
greenlet 0.4.17 py38h7b6447c_0
gst-plugins-base 1.14.0 hbbd80ab_1
gstreamer 1.14.0 hb31296c_0
h5py 2.10.0 py38h7918eee_0
harfbuzz 2.4.0 hca77d97_1
hdf5 1.10.4 hb1b8bf9_0
heapdict 1.0.1 py_0
hoomd 2.9.6 cpu_py38ha309974_0 conda-forge
html5lib 1.1 py_0
icu 58.2 he6710b0_3
idna 2.10 py_0
imageio 2.9.0 py_0
imagesize 1.2.0 py_0
importlib-metadata 2.0.0 py_1
importlib_metadata 2.0.0 1
iniconfig 1.1.1 py_0
intel-openmp 2020.2 254
intervaltree 3.1.0 py_0
ipykernel 5.3.4 py38h5ca1d4c_0
ipython 7.19.0 py38hb070fc8_0
ipython_genutils 0.2.0 py38_0
ipywidgets 7.5.1 py_1
isort 5.6.4 py_0
itsdangerous 1.1.0 py_0
jbig 2.1 hdba287a_0
jdcal 1.4.1 py_0
jedi 0.17.1 py38_0
jeepney 0.5.0 pyhd3eb1b0_0
jinja2 2.11.2 py_0
joblib 0.17.0 py_0
jpeg 9b h024ee3a_2
json5 0.9.5 py_0
jsonschema 3.2.0 py_2
jupyter 1.0.0 py38_7
jupyter_client 6.1.7 py_0
jupyter_console 6.2.0 py_0
jupyter_core 4.6.3 py38_0
jupyterlab 2.2.6 py_0
jupyterlab_pygments 0.1.2 py_0
jupyterlab_server 1.2.0 py_0
keyring 21.4.0 py38_1
kiwisolver 1.3.0 py38h2531618_0
krb5 1.18.2 h173b8e3_0
lazy-object-proxy 1.4.3 py38h7b6447c_0
lcms2 2.11 h396b838_0
ld_impl_linux-64 2.33.1 h53a641e_7
libarchive 3.4.2 h62408e4_0
libcurl 7.71.1 h20c2e04_1
libedit 3.1.20191231 h14c3975_1
libffi 3.3 he6710b0_2
libgcc-ng 9.1.0 hdf63c60_0
libgfortran-ng 7.3.0 hdf63c60_0
liblief 0.10.1 he6710b0_0
libllvm10 10.0.1 hbcb73fb_5
libpng 1.6.37 hbc83047_0
libsodium 1.0.18 h7b6447c_0
libspatialindex 1.9.3 he6710b0_0
libssh2 1.9.0 h1ba5d50_1
libstdcxx-ng 9.1.0 hdf63c60_0
libtiff 4.1.0 h2733197_1
libtool 2.4.6 h7b6447c_1005
libuuid 1.0.3 h1bed415_2
libxcb 1.14 h7b6447c_0
libxml2 2.9.10 hb55368b_3
libxslt 1.1.34 hc22bd24_0
llvmlite 0.34.0 py38h269e1b5_4
locket 0.2.0 py38_1
lxml 4.6.1 py38hefd8a0e_0
lz4-c 1.9.2 heb0550a_3
lzo 2.10 h7b6447c_2
markupsafe 1.1.1 py38h7b6447c_0
matplotlib 3.3.2 0
matplotlib-base 3.3.2 py38h817c723_0
mccabe 0.6.1 py38_1
mistune 0.8.4 py38h7b6447c_1000
mkl 2020.2 256
mkl-service 2.3.0 py38he904b0f_0
mkl_fft 1.2.0 py38h23d657b_0
mkl_random 1.1.1 py38h0573a6f_0
mock 4.0.2 py_0
more-itertools 8.6.0 pyhd3eb1b0_0
mpc 1.1.0 h10f8cd9_1
mpfr 4.0.2 hb69a4c5_1
mpmath 1.1.0 py38_0
msgpack-python 1.0.0 py38hfd86e86_1
multipledispatch 0.6.0 py38_0
nbclient 0.5.1 py_0
nbconvert 6.0.7 py38_0
nbformat 5.0.8 py_0
ncurses 6.2 he6710b0_1
nest-asyncio 1.4.2 pyhd3eb1b0_0
networkx 2.5 py_0
nltk 3.5 py_0
nose 1.3.7 py38_2
notebook 6.1.4 py38_0
numba 0.51.2 py38h0573a6f_1
numexpr 2.7.1 py38h423224d_0
numpy 1.19.2 py38h54aff64_0
numpy-base 1.19.2 py38hfa32c7d_0
numpydoc 1.1.0 pyhd3eb1b0_1
olefile 0.46 py_0
openpyxl 3.0.5 py_0
openssl 1.1.1h h7b6447c_0
packaging 20.4 py_0
pandas 1.1.3 py38he6710b0_0
pandoc 2.11 hb0f4dca_0
pandocfilters 1.4.3 py38h06a4308_1
pango 1.45.3 hd140c19_0
parso 0.7.0 py_0
partd 1.1.0 py_0
patchelf 0.12 he6710b0_0
path 15.0.0 py38_0
path.py 12.5.0 0
pathlib2 2.3.5 py38_0
pathtools 0.1.2 py_1
patsy 0.5.1 py38_0
pcre 8.44 he6710b0_0
pep8 1.7.1 py38_0
pexpect 4.8.0 py38_0
pickleshare 0.7.5 py38_1000
pillow 8.0.1 py38he98fc37_0
pip 20.2.4 py38h06a4308_0
pixman 0.40.0 h7b6447c_0
pkginfo 1.6.1 py38h06a4308_0
pluggy 0.13.1 py38_0
ply 3.11 py38_0
prometheus_client 0.8.0 py_0
prompt-toolkit 3.0.8 py_0
prompt_toolkit 3.0.8 0
psutil 5.7.2 py38h7b6447c_0
ptyprocess 0.6.0 py38_0
py 1.9.0 py_0
py-lief 0.10.1 py38h403a769_0
pycodestyle 2.6.0 py_0
pycosat 0.6.3 py38h7b6447c_1
pycparser 2.20 py_2
pycurl 7.43.0.6 py38h1ba5d50_0
pydocstyle 5.1.1 py_0
pyflakes 2.2.0 py_0
pygments 2.7.2 pyhd3eb1b0_0
pylint 2.6.0 py38_0
pyodbc 4.0.30 py38he6710b0_0
pyopenssl 19.1.0 py_1
pyparsing 2.4.7 py_0
pyqt 5.9.2 py38h05f1152_4
pyrsistent 0.17.3 py38h7b6447c_0
pysocks 1.7.1 py38_0
pytables 3.6.1 py38h9fd0a39_0
pytest 6.1.1 py38_0
python 3.8.5 h7579374_1
python-dateutil 2.8.1 py_0
python-jsonrpc-server 0.4.0 py_0
python-language-server 0.35.1 py_0
python-libarchive-c 2.9 py_0
python_abi 3.8 2_cp38 conda-forge
pytz 2020.1 py_0
pywavelets 1.1.1 py38h7b6447c_2
pyxdg 0.27 pyhd3eb1b0_0
pyyaml 5.3.1 py38h7b6447c_1
pyzmq 19.0.2 py38he6710b0_1
qdarkstyle 2.8.1 py_0
qt 5.9.7 h5867ecd_1
qtawesome 1.0.1 py_0
qtconsole 4.7.7 py_0
qtpy 1.9.0 py_0
readline 8.0 h7b6447c_0
regex 2020.10.15 py38h7b6447c_0
requests 2.24.0 py_0
ripgrep 12.1.1 0
rope 0.18.0 py_0
rtree 0.9.4 py38_1
ruamel_yaml 0.15.87 py38h7b6447c_1
scikit-image 0.17.2 py38hdf5156a_0
scikit-learn 0.23.2 py38h0573a6f_0
scipy 1.5.2 py38h0b6359f_0
seaborn 0.11.0 py_0
secretstorage 3.1.2 py38_0
send2trash 1.5.0 py38_0
setuptools 50.3.1 py38h06a4308_1
simplegeneric 0.8.1 py38_2
singledispatch 3.4.0.3 py_1001
sip 4.19.13 py38he6710b0_0
six 1.15.0 py38h06a4308_0
snowballstemmer 2.0.0 py_0
sortedcollections 1.2.1 py_0
sortedcontainers 2.2.2 py_0
soupsieve 2.0.1 py_0
sphinx 3.2.1 py_0
sphinxcontrib 1.0 py38_1
sphinxcontrib-applehelp 1.0.2 py_0
sphinxcontrib-devhelp 1.0.2 py_0
sphinxcontrib-htmlhelp 1.0.3 py_0
sphinxcontrib-jsmath 1.0.1 py_0
sphinxcontrib-qthelp 1.0.3 py_0
sphinxcontrib-serializinghtml 1.1.4 py_0
sphinxcontrib-websupport 1.2.4 py_0
spyder 4.1.5 py38_0
spyder-kernels 1.9.4 py38_0
sqlalchemy 1.3.20 py38h7b6447c_0
sqlite 3.33.0 h62c20be_0
statsmodels 0.12.0 py38h7b6447c_0
sympy 1.6.2 py38h06a4308_1
tbb 2020.3 hfd86e86_0
tblib 1.7.0 py_0
terminado 0.9.1 py38_0
testpath 0.4.4 py_0
threadpoolctl 2.1.0 pyh5ca1d4c_0
tifffile 2020.10.1 py38hdd07704_2
tk 8.6.10 hbc83047_0
toml 0.10.1 py_0
toolz 0.11.1 py_0
tornado 6.0.4 py38h7b6447c_1
tqdm 4.50.2 py_0
traitlets 5.0.5 py_0
typing_extensions 3.7.4.3 py_0
ujson 4.0.1 py38he6710b0_0
unicodecsv 0.14.1 py38_0
unixodbc 2.3.9 h7b6447c_0
urllib3 1.25.11 py_0
watchdog 0.10.3 py38_0
wcwidth 0.2.5 py_0
webencodings 0.5.1 py38_1
werkzeug 1.0.1 py_0
wheel 0.35.1 py_0
widgetsnbextension 3.5.1 py38_0
wrapt 1.11.2 py38h7b6447c_0
wurlitzer 2.0.1 py38_0
xlrd 1.2.0 py_0
xlsxwriter 1.3.7 py_0
xlwt 1.3.0 py38_0
xz 5.2.5 h7b6447c_0
yaml 0.2.5 h7b6447c_0
yapf 0.30.0 py_0
zeromq 4.3.3 he6710b0_3
zict 2.0.0 py_0
zipp 3.4.0 pyhd3eb1b0_0
zlib 1.2.11 h7b6447c_3
zope 1.0 py38_1
zope.event 4.5.0 py38_0
zope.interface 5.1.2 py38h7b6447c_0
zstd 1.4.5 h9ceee32_0
(hoomdtest) adil@adil-desktop:~$

Tim Moore

unread,

Aug 13, 2022, 11:08:57 PM8/13/22

to hoomd...@googlegroups.com

Adil,

I cannot reproduce the behavior locally on an intel mac. With your command anaconda is not able to solve the environment for me. However, when i run “conda create -n hoomdtest python=3.8.5 hoomd”, it pulls v3.3.0 for me.

Tim

To view this discussion on the web visit https://groups.google.com/d/msgid/hoomd-users/6110ce13-7f46-4cb5-83a2-006a462d0262n%40googlegroups.com.

--

Tim Moore

Adil Mughal

unread,

Aug 14, 2022, 3:14:29 AM8/14/22

to hoomd-users

Hi Tim,

Your method worked! I reproduce below the output from my terminal - I clearly have hoomd 3.3.0 now.

Thank you very much!

A

====================================================================================================================================================

(base) adil@adil-desktop:~$ conda config --add channels conda-forge
(base) adil@adil-desktop:~$ conda create -n hoomdtest python=3.8.5 hoomd

Collecting package metadata (current_repodata.json): done

Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

environment location: /home/adil/miniconda3/envs/hoomdtest

added / updated specs:
- hoomd

- python=3.8.5

The following packages will be downloaded:

package | build
---------------------------|-----------------
_libgcc_mutex-0.1 | conda_forge 3 KB conda-forge
_openmp_mutex-4.5 | 2_gnu 23 KB conda-forge
binutils_impl_linux-64-2.36.1| h193b22a_2 10.4 MB conda-forge
ca-certificates-2022.6.15 | ha878542_0 149 KB conda-forge
clang-13.0.1 | ha770c72_0 125 KB conda-forge
clang-13-13.0.1 |default_hc23dcda_0 1004 KB conda-forge
clangxx-13.0.1 |default_ha53f305_0 125 KB conda-forge
gcc_impl_linux-64-12.1.0 | hea43390_16 55.8 MB conda-forge
hoomd-3.3.0 |cpu_py38h7fb02f5_2 8.0 MB conda-forge
kernel-headers_linux-64-2.6.32| he073ed8_15 707 KB conda-forge
ld_impl_linux-64-2.36.1 | hea4e1c9_2 667 KB conda-forge
libblas-3.9.0 |16_linux64_openblas 13 KB conda-forge
libcblas-3.9.0 |16_linux64_openblas 13 KB conda-forge
libclang-cpp-13.0.1 |default_hc23dcda_0 126 KB conda-forge
libclang-cpp13-13.0.1 |default_hc23dcda_0 19.8 MB conda-forge
libcxx-13.0.1 | hf52228f_0 1.2 MB conda-forge
libcxxabi-13.0.1 | ha770c72_0 182 KB conda-forge
libffi-3.2.1 | he1b5a44_1007 47 KB conda-forge
libgcc-devel_linux-64-12.1.0| h1ec3361_16 3.3 MB conda-forge
libgcc-ng-12.1.0 | h8d9b700_16 940 KB conda-forge
libgfortran-ng-12.1.0 | h69a702a_16 23 KB conda-forge
libgfortran5-12.1.0 | hdcd56e2_16 1.8 MB conda-forge
libgomp-12.1.0 | h8d9b700_16 459 KB conda-forge
liblapack-3.9.0 |16_linux64_openblas 13 KB conda-forge
libllvm13-13.0.1 | hf817b99_2 33.6 MB conda-forge
libopenblas-0.3.21 |pthreads_h78a6416_0 10.1 MB conda-forge
libsanitizer-12.1.0 | ha89aaad_16 6.2 MB conda-forge
libsqlite-3.39.2 | h753d276_1 789 KB conda-forge
libstdcxx-devel_linux-64-12.1.0| h1ec3361_16 9.9 MB conda-forge
libstdcxx-ng-12.1.0 | ha89aaad_16 4.3 MB conda-forge
libzlib-1.2.12 | h166bdaf_2 63 KB conda-forge
ncurses-6.3 | h27087fc_1 1002 KB conda-forge
numpy-1.23.1 | py38h3a7f9d9_0 7.1 MB conda-forge
openssl-1.1.1q | h166bdaf_0 2.1 MB conda-forge
pip-22.2.2 | pyhd8ed1ab_0 1.5 MB conda-forge
pybind11-abi-4 | hd8ed1ab_3 10 KB conda-forge
python-3.8.5 |h1103e12_9_cpython 21.9 MB conda-forge
readline-8.1.2 | h0f457ee_0 291 KB conda-forge
setuptools-64.0.3 | py38h578d9bd_0 1.4 MB conda-forge
sqlite-3.39.2 | h4ff8645_1 788 KB conda-forge
sysroot_linux-64-2.12 | he073ed8_15 31.4 MB conda-forge
tbb-2021.5.0 | h924138e_1 1.9 MB conda-forge
tk-8.6.12 | h27826a3_0 3.3 MB conda-forge
wheel-0.37.1 | pyhd8ed1ab_0 31 KB conda-forge
xz-5.2.6 | h166bdaf_0 409 KB conda-forge
zlib-1.2.12 | h166bdaf_2 91 KB conda-forge
------------------------------------------------------------
Total: 242.9 MB

The following NEW packages will be INSTALLED:

_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.36.1-h193b22a_2
ca-certificates conda-forge/linux-64::ca-certificates-2022.6.15-ha878542_0
clang conda-forge/linux-64::clang-13.0.1-ha770c72_0
clang-13 conda-forge/linux-64::clang-13-13.0.1-default_hc23dcda_0
clangxx conda-forge/linux-64::clangxx-13.0.1-default_ha53f305_0
gcc_impl_linux-64 conda-forge/linux-64::gcc_impl_linux-64-12.1.0-hea43390_16
hoomd conda-forge/linux-64::hoomd-3.3.0-cpu_py38h7fb02f5_2
kernel-headers_li~ conda-forge/noarch::kernel-headers_linux-64-2.6.32-he073ed8_15
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.36.1-hea4e1c9_2
libblas conda-forge/linux-64::libblas-3.9.0-16_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-16_linux64_openblas
libclang-cpp conda-forge/linux-64::libclang-cpp-13.0.1-default_hc23dcda_0
libclang-cpp13 conda-forge/linux-64::libclang-cpp13-13.0.1-default_hc23dcda_0
libcxx conda-forge/linux-64::libcxx-13.0.1-hf52228f_0
libcxxabi conda-forge/linux-64::libcxxabi-13.0.1-ha770c72_0
libffi conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007
libgcc-devel_linu~ conda-forge/linux-64::libgcc-devel_linux-64-12.1.0-h1ec3361_16
libgcc-ng conda-forge/linux-64::libgcc-ng-12.1.0-h8d9b700_16
libgfortran-ng conda-forge/linux-64::libgfortran-ng-12.1.0-h69a702a_16
libgfortran5 conda-forge/linux-64::libgfortran5-12.1.0-hdcd56e2_16
libgomp conda-forge/linux-64::libgomp-12.1.0-h8d9b700_16
liblapack conda-forge/linux-64::liblapack-3.9.0-16_linux64_openblas
libllvm13 conda-forge/linux-64::libllvm13-13.0.1-hf817b99_2
libopenblas conda-forge/linux-64::libopenblas-0.3.21-pthreads_h78a6416_0
libsanitizer conda-forge/linux-64::libsanitizer-12.1.0-ha89aaad_16
libsqlite conda-forge/linux-64::libsqlite-3.39.2-h753d276_1
libstdcxx-devel_l~ conda-forge/linux-64::libstdcxx-devel_linux-64-12.1.0-h1ec3361_16
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.1.0-ha89aaad_16
libzlib conda-forge/linux-64::libzlib-1.2.12-h166bdaf_2
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
numpy conda-forge/linux-64::numpy-1.23.1-py38h3a7f9d9_0
openssl conda-forge/linux-64::openssl-1.1.1q-h166bdaf_0
pip conda-forge/noarch::pip-22.2.2-pyhd8ed1ab_0
pybind11-abi conda-forge/noarch::pybind11-abi-4-hd8ed1ab_3
python conda-forge/linux-64::python-3.8.5-h1103e12_9_cpython
python_abi conda-forge/linux-64::python_abi-3.8-2_cp38
readline conda-forge/linux-64::readline-8.1.2-h0f457ee_0
setuptools conda-forge/linux-64::setuptools-64.0.3-py38h578d9bd_0
sqlite conda-forge/linux-64::sqlite-3.39.2-h4ff8645_1
sysroot_linux-64 conda-forge/noarch::sysroot_linux-64-2.12-he073ed8_15
tbb conda-forge/linux-64::tbb-2021.5.0-h924138e_1
tk conda-forge/linux-64::tk-8.6.12-h27826a3_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
zlib conda-forge/linux-64::zlib-1.2.12-h166bdaf_2

Proceed ([y]/n)? y

Downloading and Extracting Packages
libsqlite-3.39.2 | 789 KB | ############################################################################################################################ | 100%
kernel-headers_linux | 707 KB | ############################################################################################################################ | 100%
gcc_impl_linux-64-12 | 55.8 MB | ############################################################################################################################ | 100%
sqlite-3.39.2 | 788 KB | ############################################################################################################################ | 100%
hoomd-3.3.0 | 8.0 MB | ############################################################################################################################ | 100%
libgcc-ng-12.1.0 | 940 KB | ############################################################################################################################ | 100%
openssl-1.1.1q | 2.1 MB | ############################################################################################################################ | 100%
clang-13-13.0.1 | 1004 KB | ############################################################################################################################ | 100%
pybind11-abi-4 | 10 KB | ############################################################################################################################ | 100%
libsanitizer-12.1.0 | 6.2 MB | ############################################################################################################################ | 100%
tk-8.6.12 | 3.3 MB | ############################################################################################################################ | 100%
libstdcxx-devel_linu | 9.9 MB | ############################################################################################################################ | 100%
libcxxabi-13.0.1 | 182 KB | ############################################################################################################################ | 100%
libllvm13-13.0.1 | 33.6 MB | ############################################################################################################################ | 100%
sysroot_linux-64-2.1 | 31.4 MB | ############################################################################################################################ | 100%
_libgcc_mutex-0.1 | 3 KB | ############################################################################################################################ | 100%
numpy-1.23.1 | 7.1 MB | ############################################################################################################################ | 100%
_openmp_mutex-4.5 | 23 KB | ############################################################################################################################ | 100%
python-3.8.5 | 21.9 MB | ############################################################################################################################ | 100%
libblas-3.9.0 | 13 KB | ############################################################################################################################ | 100%
libopenblas-0.3.21 | 10.1 MB | ############################################################################################################################ | 100%
ca-certificates-2022 | 149 KB | ############################################################################################################################ | 100%
libgfortran-ng-12.1. | 23 KB | ############################################################################################################################ | 100%
libcblas-3.9.0 | 13 KB | ############################################################################################################################ | 100%
libgcc-devel_linux-6 | 3.3 MB | ############################################################################################################################ | 100%
xz-5.2.6 | 409 KB | ############################################################################################################################ | 100%
clangxx-13.0.1 | 125 KB | ############################################################################################################################ | 100%
libffi-3.2.1 | 47 KB | ############################################################################################################################ | 100%
zlib-1.2.12 | 91 KB | ############################################################################################################################ | 100%
setuptools-64.0.3 | 1.4 MB | ############################################################################################################################ | 100%
liblapack-3.9.0 | 13 KB | ############################################################################################################################ | 100%
binutils_impl_linux- | 10.4 MB | ############################################################################################################################ | 100%
ncurses-6.3 | 1002 KB | ############################################################################################################################ | 100%
wheel-0.37.1 | 31 KB | ############################################################################################################################ | 100%
libstdcxx-ng-12.1.0 | 4.3 MB | ############################################################################################################################ | 100%
clang-13.0.1 | 125 KB | ############################################################################################################################ | 100%
libzlib-1.2.12 | 63 KB | ############################################################################################################################ | 100%
libclang-cpp-13.0.1 | 126 KB | ############################################################################################################################ | 100%
ld_impl_linux-64-2.3 | 667 KB | ############################################################################################################################ | 100%
libgomp-12.1.0 | 459 KB | ############################################################################################################################ | 100%
pip-22.2.2 | 1.5 MB | ############################################################################################################################ | 100%
tbb-2021.5.0 | 1.9 MB | ############################################################################################################################ | 100%
libgfortran5-12.1.0 | 1.8 MB | ############################################################################################################################ | 100%
libclang-cpp13-13.0. | 19.8 MB | ############################################################################################################################ | 100%
readline-8.1.2 | 291 KB | ############################################################################################################################ | 100%
libcxx-13.0.1 | 1.2 MB | ############################################################################################################################ | 100%

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate hoomdtest
#
# To deactivate an active environment, use
#
# $ conda deactivate

(base) adil@adil-desktop:~$ conda activate hoomdtest

(hoomdtest) adil@adil-desktop:~$ conda list
# packages in environment at /home/adil/miniconda3/envs/hoomdtest:
#
# Name Version Build Channel

_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
binutils_impl_linux-64 2.36.1 h193b22a_2 conda-forge
ca-certificates 2022.6.15 ha878542_0 conda-forge
clang 13.0.1 ha770c72_0 conda-forge
clang-13 13.0.1 default_hc23dcda_0 conda-forge
clangxx 13.0.1 default_ha53f305_0 conda-forge
gcc_impl_linux-64 12.1.0 hea43390_16 conda-forge
hoomd 3.3.0 cpu_py38h7fb02f5_2 conda-forge
kernel-headers_linux-64 2.6.32 he073ed8_15 conda-forge
ld_impl_linux-64 2.36.1 hea4e1c9_2 conda-forge
libblas 3.9.0 16_linux64_openblas conda-forge
libcblas 3.9.0 16_linux64_openblas conda-forge
libclang-cpp 13.0.1 default_hc23dcda_0 conda-forge
libclang-cpp13 13.0.1 default_hc23dcda_0 conda-forge
libcxx 13.0.1 hf52228f_0 conda-forge
libcxxabi 13.0.1 ha770c72_0 conda-forge
libffi 3.2.1 he1b5a44_1007 conda-forge
libgcc-devel_linux-64 12.1.0 h1ec3361_16 conda-forge
libgcc-ng 12.1.0 h8d9b700_16 conda-forge
libgfortran-ng 12.1.0 h69a702a_16 conda-forge
libgfortran5 12.1.0 hdcd56e2_16 conda-forge
libgomp 12.1.0 h8d9b700_16 conda-forge
liblapack 3.9.0 16_linux64_openblas conda-forge
libllvm13 13.0.1 hf817b99_2 conda-forge
libopenblas 0.3.21 pthreads_h78a6416_0 conda-forge
libsanitizer 12.1.0 ha89aaad_16 conda-forge
libsqlite 3.39.2 h753d276_1 conda-forge
libstdcxx-devel_linux-64 12.1.0 h1ec3361_16 conda-forge
libstdcxx-ng 12.1.0 ha89aaad_16 conda-forge
libzlib 1.2.12 h166bdaf_2 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
numpy 1.23.1 py38h3a7f9d9_0 conda-forge
openssl 1.1.1q h166bdaf_0 conda-forge
pip 22.2.2 pyhd8ed1ab_0 conda-forge
pybind11-abi 4 hd8ed1ab_3 conda-forge
python 3.8.5 h1103e12_9_cpython conda-forge
python_abi 3.8 2_cp38 conda-forge
readline 8.1.2 h0f457ee_0 conda-forge
setuptools 64.0.3 py38h578d9bd_0 conda-forge
sqlite 3.39.2 h4ff8645_1 conda-forge
sysroot_linux-64 2.12 he073ed8_15 conda-forge
tbb 2021.5.0 h924138e_1 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
zlib 1.2.12 h166bdaf_2 conda-forge

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