Hey Azam,
Have you looked at the logging tutorial which addresses this exact question? As for visualization, this is based on what software you want to use. I personally use OVITO basic or pro typically, but there are a variety of options for rendering or viewing simulation trajectories.
Also in the future, saying something doesn't work makes helping
difficult. To get the best answers in the mailing list, please
provide minimal working examples of the failures, what you expect
to happen, what happens (with error output if appropriate), etc...
Best,
Brandon
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Hey again Azam,
Did you look at the documentation to see if hoomd.hpmc.compute.ThermodynamicQuantities exists? You would need to use something like log[("box", "volume")] = (lambda : sim.state.box.volume, "scalar") to store the volume as part 4 of the logging tutorial shows with estimated time remaining (ETR).
Best,
Brandon
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