Mfp-1d driver
yukken
I am a master course student in Japan.
I am very eager to try Hooke, becasue I want analyze the force
spectrum of our AFM systems(Asylum Research, MFP3D).
In theese days, I installed Hooke.
And I could try it.
But I have a problem.
I couldn't load my force spectrum, which measured by our AFM systems
（MFP3D）, to Hooke.
Please let me know, how to load my force spectrum.
I'm sorry.
I am not good at writting English.
Sincerely yours
ms
thansk for your mail.
> I am a master course student in Japan.
> I am very eager to try Hooke, becasue I want analyze the force
> spectrum of our AFM systems(Asylum Research, MFP3D).
>
> In theese days, I installed Hooke.
> And I could try it.
>
> But I have a problem.
>
> I couldn't load my force spectrum, which measured by our AFM systems
> （MFP3D）, to Hooke.
>
> Please let me know, how to load my force spectrum.
Support for MFP is still at its very first stages and it will not
probably work well. You can however try to follow the instructions
displayed here:
http://code.google.com/p/hooke/wiki/Mfp1dSupport
Please note that this holds only for the *SVN version* of Hooke. The
downloadable .zip is not up-to-date (I will upload a newer one soon).
If you want to try the SVN version, you're more than welcome!
Yours,
Massimo
m.s.
> probably work well. You can however try to follow the instructions
> displayed here:
>
> http://code.google.com/p/hooke/wiki/Mfp1dSupport
>
> Please note that this holds only for the *SVN version* of Hooke. The
> downloadable .zip is not up-to-date (I will upload a newer one soon).
m.
yukken
I'm yukken.
Thanks for your cooperation.
But I couldn't export our Force Curve data.
I could compile '' ExportMFP1DMenu.ipf" and "ExportMFP1D " .
Then, I chose a folder that contains Igor binary waves.
And the script ran.
But, command window showed
"" *ExportMFP1DFolder()
Export completed (0 files) "" .
What do you think the casues?
I uploaded our Force Curve data(http://groups.google.com/group/
hookesoftware/files)
If you can, could you try?
y.
yukken
I have a question about Hooke.
I exported a force curve data file of MFP 3D to a CSV file.
Then, I tried to load the CSV file to Hooke.
But the file could not be loaded.
Hooke showed the follow message.
↓
--
hooke: genlist 1
Exception in thread Thread-1:
Traceback (most recent call last):
File "C:\Python25\lib\threading.py", line 486, in __bootstrap_inner
self.run()
File "C:\Python25\hooke.py", line 174, in run
cli.cmdloop()
File "C:\Python25\lib\cmd.py", line 142, in cmdloop
stop = self.onecmd(line)
File "C:\Python25\lib\cmd.py", line 219, in onecmd
return func(arg)
File "C:\Python25\hooke_cli.py", line 324, in do_genlist
self.do_plot(0)
File "C:\Python25\hooke_cli.py", line 517, in do_plot
self.current.identify(self.drivers)
File "C:\Python25\libhookecurve.py", line 16, in identify
tempcurve=driver(self.path)
File "C:\Python25\mfp1dexport.py", line 26, in __init__
self.data=self._read_columns()
File "C:\Python25\mfp1dexport.py", line 52, in _read_columns
yext.append(float(spline[1]))
ValueError: invalid literal for float(): ,
--
Hooke which I installed does not work ?
Sincerely yours
yukken
ms
Thanks for your message -it definitely shows a bug in Hooke.
However it is not related to your attempt of exporting in a CSV file.
I would not advice to use a simple CSV file for Hooke. You wouldn't be
able to use most force-spectroscopy aimed plugins. There is a
CSV-reading driver but it is mostly a proof-of-concept and it is not
meant for real use. If you want to read your MFP 3D files, my advice is:
- First, try to use the instructions in
http://code.google.com/p/hooke/wiki/Mfp1dSupport
- If the export script does not work for you (after all, MFP 3D is
probably a different thing from MFP 1D), write your own export script
and, most importantly, *your own Hooke driver*. To do that, look at the
page http://code.google.com/p/hooke/wiki/DocumentationIndex , section
"Development", and read the documents linked there. I can help you
writing the driver if you have problems.
Let me know!
Cheers,
Massimo
m.s.
Have you tried latest versions to see how they work?
On 24 Lug, 01:50, ms <deviceran...@gmail.com> wrote:
> Hi,
>
> Thanks for your message -it definitely shows a bug in Hooke.
>
> However it is not related to your attempt of exporting in a CSV file.
>
> I would not advice to use a simple CSV file for Hooke. You wouldn't be
> able to use most force-spectroscopy aimed plugins. There is a
> CSV-reading driver but it is mostly a proof-of-concept and it is not
> meant for real use. If you want to read your MFP 3D files, my advice is:
>
> - If the export script does not work for you (after all, MFP 3D is
> probably a different thing from MFP 1D), write your own export script
> and, most importantly, *your own Hooke driver*. To do that, look at the
yukken
I'm sorry for reply.
I tried latest versions.
But It was hard for me to analyze my MFP3D data, becase I could not
import the file to Hooke.
And I made a analysis soft for my MFP3D data by Excel (Microsoft).
As a result, it worked.
thanks for advice.
Cheers,
yukken
ms
> Hi,
>
> I'm sorry for reply.
>
> I tried latest versions.
>
> But It was hard for me to analyze my MFP3D data, becase I could not
> import the file to Hooke.
>
> And I made a analysis soft for my MFP3D data by Excel (Microsoft).
> As a result, it worked.
May I know how does your Excel software work? I would love for Hooke to
support MFP3D, but I don't have one available for tests, and every
documentation you have would be helpful.
thanks,
Massimo
yukken
>May I know how does your Excel software work? I would love for Hooke to
>support MFP3D, but I don't have one available for tests, and every
>documentation you have would be helpful.
But analysis using Excel was easier for me. (becasue I am good at
using Excel.)
By Excel, I tryed to filer many Force curve data, witch have single
and multiple bond.
And the filtering gave me data set of only the single molecule rupture
force.
Thanks.
Yukken