residual correlation matrix from spOccupancy

[Claudio Angelini]

Hi all,

after fitting JSDM model with spOccupancy (sfJSDM and lfJSDM), I got the best model. Now I would like to have the (residual) correlation matrix in order to have infomation on co-occurrence patterns, but I do not know how to do this.

Thanks in advance for your help.

[Manuel Marton Marc KERY]

Dear Claudio,

the right group for your question on the spOccupancy and spAbundance packages is this one:

https://groups.google.com/g/spocc-spabund-users/about

spOccupancy and spAbundance users - Google Groups Welcome to the spOccupancy and spAbundance users discussion group! This group is for questions and discussions related to the spOccupancy and spAbundance R packages and associated methods. groups.google.com

Best regards ---- Marc

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De: hmec...@googlegroups.com <hmec...@googlegroups.com> en nombre de Claudio Angelini <opp...@gmail.com>
Enviado: domingo, 23 de marzo de 2025 21:30
Para: hmecology: Hierarchical Modeling in Ecology <hmec...@googlegroups.com>
Asunto: residual correlation matrix from spOccupancy

 

Hi all,

after fitting JSDM model with spOccupancy (sfJSDM and lfJSDM), I got the best model. Now I would like to have the (residual) correlation matrix in order to have infomation on co-occurrence patterns, but I do not know how to do this.

Thanks in advance for your help.

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[Claudio Angelini]

Dear Marc,

thanks for your answer.  I was not aware of the spOccupancy group. I am going to post there.

all the best