Run Docker image on Windows 10

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Karl Clauser

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Feb 15, 2023, 8:45:33 PM2/15/23
to HLAthena
Hi Sisi,

After installing Docker Desktop I successfully ran HLAthena.

However, windows semantics were necessary in the -v and -w options provided in the instructions at http://hlathena.tools/

After creating the directory 
D:\HLAthena
Then opening a Windows command prompt window

To get the documentation:
D:\HLAthena>docker run -w /pwd ssarkizova/hlathena-external predict --help

To run predictions:

D:\HLAthena>docker run -v D:\HLAthena\:/pwd -w /pwd ssarkizova/hlathena-external predict --runID sample_input_peptides  --rundir ./ --alleles A0101 --peptides ./sample_input_peptides.txt

--Karl

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