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1–19 of 19
Welcome to the HLAthena discussion group.
Thank you for giving our tools a try. We will do our best to answer your questions.
Cheers,
HLAthena Team
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salim khakoo
8/20/25
HLA-C predictions
Hi I was trying to access the predict tool, and select some HLA-C alleles, but the drop down menu
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HLA-C predictions
Hi I was trying to access the predict tool, and select some HLA-C alleles, but the drop down menu
8/20/25
Bernett Lee
, …
Wenshu Tang
5
6/5/25
Issues with docker image
Dear Team, I am encountering the same problem. Is there a solution yet? Thanks! Best regards Rishad
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Issues with docker image
Dear Team, I am encountering the same problem. Is there a solution yet? Thanks! Best regards Rishad
6/5/25
Karl Clauser
,
Sisi Sarkizova
2
1/25/25
Log-transform expr? will it be log 10 or log2
Hi Karl, thanks for the question! For accurate prediction with MSiCE, I would suggest to undo the
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Log-transform expr? will it be log 10 or log2
Hi Karl, thanks for the question! For accurate prediction with MSiCE, I would suggest to undo the
1/25/25
roc...@gmail.com
2/19/24
Singularity due to Docker Issues in M2 Mac
Dear HLAthena team, Is there an available Singularity container for HLAthena? This would workaround
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Singularity due to Docker Issues in M2 Mac
Dear HLAthena team, Is there an available Singularity container for HLAthena? This would workaround
2/19/24
Sandeep Kumar Bansal
,
Sisi Sarkizova
3
7/28/23
THRESOLD FOR ASSIGNED MSi scores
Dear Sir, Thank you for your response. It means a lot to me. I appreciate it. I have one more query.
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THRESOLD FOR ASSIGNED MSi scores
Dear Sir, Thank you for your response. It means a lot to me. I appreciate it. I have one more query.
7/28/23
Karl Clauser
2/15/23
Run Docker image on Windows 10
Hi Sisi, After installing Docker Desktop I successfully ran HLAthena. However, windows semantics were
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Run Docker image on Windows 10
Hi Sisi, After installing Docker Desktop I successfully ran HLAthena. However, windows semantics were
2/15/23
Karl Clauser
2/15/23
An error has occurred. hlathena.tools low memory?
Hi Sisi, Yesterday on http://hlathena.tools/ after successfully running predictions with peptide
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An error has occurred. hlathena.tools low memory?
Hi Sisi, Yesterday on http://hlathena.tools/ after successfully running predictions with peptide
2/15/23
atsushi kawamura
1/30/23
MSiC
Greeting! MSiC means 0.95> strong binding, 0.90> normal binding, 0.80> weak binding. I
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MSiC
Greeting! MSiC means 0.95> strong binding, 0.90> normal binding, 0.80> weak binding. I
1/30/23
Gary Chan
2
8/8/22
Number of input and output rows does not match
oops, nvm, sorry! I found some of the pep or ctex sequences contained "?", so the HLAthena
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Number of input and output rows does not match
oops, nvm, sorry! I found some of the pep or ctex sequences contained "?", so the HLAthena
8/8/22
Benjamin Weeder
,
Arnau PC
2
5/18/22
Unable to change models directory location using docker implementation of HLAthena-external
Hello, I have had same issue with singularities and I have solved it by manually changing the '
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Unable to change models directory location using docker implementation of HLAthena-external
Hello, I have had same issue with singularities and I have solved it by manually changing the '
5/18/22
Laurenz De Cock
2
6/15/21
Docker Image and Apple M1 Chip
Dear HLAthena, I researched the error a little bit further and also found this with regard to the AVX
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Docker Image and Apple M1 Chip
Dear HLAthena, I researched the error a little bit further and also found this with regard to the AVX
6/15/21
Darwin Kwok
,
Sisi Sarkizova
5
10/26/20
HLAthena Predict returns Error
Hey Sisi! This is awesome, thank you! I will give it a shot over the course of this week (just need
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HLAthena Predict returns Error
Hey Sisi! This is awesome, thank you! I will give it a shot over the course of this week (just need
10/26/20
momin...@gmail.com
9/14/20
Training models
Hi , Thanks for the great tool you have made. Since the tool is now open source do you have the code
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Training models
Hi , Thanks for the great tool you have made. Since the tool is now open source do you have the code
9/14/20
Francisco Martinez
, …
zhewe...@gmail.com
14
5/13/20
Unable to run HLAthena in the Terra/FireCloud
Hi Sisi: I met some error in test-out.log " rm: cannot remove 'clevnnfeats.tmp': No such
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Unable to run HLAthena in the Terra/FireCloud
Hi Sisi: I met some error in test-out.log " rm: cannot remove 'clevnnfeats.tmp': No such
5/13/20
Roc Farriol
,
Sisi Sarkizova
2
5/6/20
hlathena.tools is down?
Dear Roc Farriol, Apologies for the disruption and thanks for the heads up. The site is back up again
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hlathena.tools is down?
Dear Roc Farriol, Apologies for the disruption and thanks for the heads up. The site is back up again
5/6/20
Stefan Barisic
,
Sisi Sarkizova
2
2/27/20
Predict peptide binders from an ORF or protein sequence
Hi Stefan, HLAthena does support this scenario - you can input sequences in a fasta format and they
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Predict peptide binders from an ORF or protein sequence
Hi Stefan, HLAthena does support this scenario - you can input sequences in a fasta format and they
2/27/20
mjsl...@gmail.com
,
Sisi Sarkizova
2
2/24/20
Question about MSi score/pranks
Hi Michael, I'm glad you were able to run HLAthena on Terra. Let me know if we can help clarify
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Question about MSi score/pranks
Hi Michael, I'm glad you were able to run HLAthena on Terra. Let me know if we can help clarify
2/24/20
Laurenz...@ugent.be
,
Sisi Sarkizova
5
2/12/20
HLAthena server returns error
Glad it worked well! Sisi On Wed, Feb 12, 2020 at 4:25 AM <Laurenz...@ugent.be> wrote: Dear
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HLAthena server returns error
Glad it worked well! Sisi On Wed, Feb 12, 2020 at 4:25 AM <Laurenz...@ugent.be> wrote: Dear
2/12/20
alon_...@alumni.brown.edu
, …
Sisi Sarkizova
13
1/9/20
Some documentation for the "Predict" feature
Hi Alon, Percentile ranks for the expression-only case should be working now. Please let me know if
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Some documentation for the "Predict" feature
Hi Alon, Percentile ranks for the expression-only case should be working now. Please let me know if
1/9/20