As Jasper said, you can override the LinkPickerPlugin and change the configuration. I would override the constructor, call super and after that I would modify the config object: config.put("base.uuid", YOUR_UUID);
The challenge I see is that your link picker will need to be aware of the HST channels and their root folders in the content (which is HST information, ideally non accessible from wicket components). I expect you'll either need a mapping somewhere (channel <-> root folder), or read the HST configuration or mark the folders that are roots of channels with some mixin (non recommended, I would keep the content as unaware of this as possible).
hth!
Minos
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