No results or errors when running HiC-Pro

[Amina Hussein]

Hello,

I am trying to use HiC-Pro to analyze HiChIP data. When I try to run HiC-Pro, it runs for a few seconds, and an output file is generated with no results or logs. This is the command I am using:

${HIC_PATH}/bin/HiC-Pro -i ${DATA_PATH} -o ${OUTPATH} -c ${HIC_PATH}/config-hicpro.txt

Tree of my input data:

my_data/HiChIP/2022-12-19-H3K27ac-stage-10.5/rawdata/

└── sample1

    ├── hichip_R1.fastq.gz

    └── hichip_R2.fastq.gz

Thank you,

Amina