Ligation site for DpnII and DdeI and example config file

[Ahmed Abbas]

Hi all,

How to get the Ligation site for DpnII and DdeI?

Also, where to find an example of config file with all entries filled properly?

I think I cannot run the method accurately because the results I get are much different than expected.

Thanks
Ahmed

[Tim Kloppe]

The config-hicpro.txt file can be downloaded from the main page of HiC-Pro on github:  nservant/HiC-Pro: HiC-Pro: An optimized and flexible pipeline for Hi-C data processing